Wall clock time and date at job start Tue Mar 31 2020 22:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34231 * 116.99943 * 2 1 4 4 O 1.20821 * 120.00091 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99761 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47185 * 179.97438 * 5 3 2 7 7 C 1.37105 * 120.00071 * 263.99341 * 6 5 3 8 8 H 1.07998 * 120.00292 * 197.01497 * 7 6 5 9 9 C 1.38950 * 119.99881 * 17.00378 * 7 6 5 10 10 N 1.31416 * 119.99684 * 21.26460 * 9 7 6 11 11 Si 1.86797 * 120.00389 * 201.25762 * 9 7 6 12 12 H 1.48500 * 109.46997 * 90.00323 * 11 9 7 13 13 H 1.48500 * 109.47238 * 210.00536 * 11 9 7 14 14 H 1.48507 * 109.46972 * 330.00417 * 11 9 7 15 15 C 1.34776 * 120.00259 * 83.98541 * 6 5 3 16 16 O 1.21286 * 119.99957 * 0.02562 * 15 6 5 17 17 C 1.50704 * 119.99905 * 180.27615 * 15 6 5 18 18 S 1.81404 * 109.46909 * 179.72928 * 17 15 6 19 19 C 1.76204 * 102.99840 * 180.02562 * 18 17 15 20 20 C 1.39034 * 120.05303 * 359.72297 * 19 18 17 21 21 C 1.38092 * 120.02686 * 179.70041 * 20 19 18 22 22 C 1.38235 * 120.13426 * 0.59644 * 21 20 19 23 23 C 1.38781 * 120.10176 * 359.68193 * 22 21 20 24 24 O 1.35908 * 120.01209 * 179.97438 * 23 22 21 25 25 C 1.42899 * 117.00104 * 0.02562 * 24 23 22 26 26 C 1.38591 * 119.97593 * 0.02562 * 23 22 21 27 27 H 1.09006 * 109.47137 * 300.00658 * 1 2 3 28 28 H 1.08997 * 109.47177 * 59.99832 * 1 2 3 29 29 H 1.08995 * 109.47349 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47460 * 60.00233 * 5 3 2 31 31 H 1.09003 * 109.47391 * 299.99693 * 5 3 2 32 32 H 0.96999 * 119.99878 * 179.97438 * 10 9 7 33 33 H 1.09000 * 109.47258 * 299.72882 * 17 15 6 34 34 H 1.08998 * 109.46881 * 59.73150 * 17 15 6 35 35 H 1.07998 * 119.98240 * 359.97438 * 20 19 18 36 36 H 1.07996 * 119.93011 * 180.29945 * 21 20 19 37 37 H 1.08003 * 119.94413 * 179.69961 * 22 21 20 38 38 H 1.09006 * 109.46834 * 300.00436 * 25 24 23 39 39 H 1.09001 * 109.47188 * 59.99639 * 25 24 23 40 40 H 1.08993 * 109.47014 * 180.02562 * 25 24 23 41 41 H 1.08001 * 120.07249 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2948 3.3016 -1.1822 8 1 4.8541 4.2254 -1.1744 9 6 3.8928 2.7430 -2.3893 10 7 2.8930 1.8907 -2.4182 11 14 4.7732 3.2038 -3.9710 12 1 5.9033 2.2678 -4.1992 13 1 3.8231 3.1196 -5.1091 14 1 5.2934 4.5906 -3.8620 15 6 4.0560 3.3609 1.1595 16 8 3.7793 2.8108 2.2044 17 6 4.4774 4.8079 1.1582 18 16 4.4714 5.4408 2.8582 19 6 4.9805 7.1159 2.6593 20 6 5.2716 7.6094 1.3924 21 6 5.6645 8.9240 1.2364 22 6 5.7815 9.7489 2.3395 23 6 5.4980 9.2604 3.6071 24 8 5.6141 10.0729 4.6904 25 6 6.0322 11.4182 4.4506 26 6 5.0974 7.9435 3.7681 27 1 -0.3634 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.9557 0.7809 -0.8908 31 1 3.9564 0.7806 0.8892 32 1 2.6120 1.5010 -3.2609 33 1 5.4811 4.8936 0.7421 34 1 3.7819 5.3882 0.5520 35 1 5.1860 6.9655 0.5296 36 1 5.8855 9.3070 0.2512 37 1 6.0938 10.7752 2.2144 38 1 7.0156 11.4146 3.9803 39 1 5.3162 11.9092 3.7915 40 1 6.0843 11.9566 5.3968 41 1 4.8759 7.5618 4.7539 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348801077.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:06 Heat of formation + Delta-G solvation = -129.092720 kcal Electronic energy + Delta-G solvation = -26580.952287 eV Core-core repulsion = 22553.071647 eV Total energy + Delta-G solvation = -4027.880641 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.38900 -40.99054 -40.16708 -38.31013 -37.34668 -36.59261 -33.59866 -32.15989 -32.10839 -30.98894 -29.49570 -28.10410 -27.76651 -26.48444 -23.87556 -23.16582 -22.29666 -21.22743 -19.73683 -18.96709 -18.50626 -18.28560 -17.35527 -17.32322 -17.03785 -16.99897 -16.87287 -16.64374 -16.22771 -16.15560 -15.88094 -14.98415 -14.80938 -14.55323 -14.44970 -14.24909 -14.14001 -13.93537 -13.48170 -13.37705 -13.14661 -13.02811 -12.87746 -12.62358 -12.55513 -12.48346 -12.13700 -12.09606 -12.00344 -11.60286 -11.56802 -11.09324 -10.98956 -10.70343 -10.66748 -9.97297 -9.34137 -8.45608 -8.43722 -6.01121 0.17268 0.32177 0.40092 1.36698 1.42406 1.50416 1.60646 1.63967 1.74402 2.16029 2.30798 2.39758 2.67096 2.76446 3.05359 3.83080 3.96633 4.08917 4.09453 4.15492 4.23603 4.26106 4.33932 4.38662 4.39919 4.44045 4.48256 4.49754 4.55138 4.66404 4.71123 4.75511 4.87520 5.19617 5.29370 5.36760 5.41660 5.55196 5.63387 5.66272 6.23466 6.42909 6.98512 7.16008 7.33600 7.74182 8.63214 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014554 B = 0.002987 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.452320 B = 9371.536965 C =10815.847793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.486 3.514 4 O -0.537 6.537 5 C 0.154 3.846 6 N -0.429 5.429 7 C -0.362 4.362 8 H 0.120 0.880 9 C 0.002 3.998 10 N -0.891 5.891 11 Si 0.997 3.003 12 H -0.268 1.268 13 H -0.291 1.291 14 H -0.256 1.256 15 C 0.469 3.531 16 O -0.615 6.615 17 C -0.100 4.100 18 S -0.078 6.078 19 C -0.064 4.064 20 C -0.186 4.186 21 C -0.056 4.056 22 C -0.212 4.212 23 C 0.139 3.861 24 O -0.335 6.335 25 C 0.017 3.983 26 C -0.156 4.156 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.135 0.865 30 H 0.126 0.874 31 H 0.093 0.907 32 H 0.274 0.726 33 H 0.126 0.874 34 H 0.110 0.890 35 H 0.129 0.871 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.119 0.881 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.100 11.879 3.116 13.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.292 6.292 3 C 0.329 3.671 4 O -0.425 6.425 5 C 0.028 3.972 6 N -0.147 5.147 7 C -0.488 4.488 8 H 0.138 0.862 9 C -0.201 4.201 10 N -0.529 5.529 11 Si 0.820 3.180 12 H -0.193 1.193 13 H -0.217 1.217 14 H -0.180 1.180 15 C 0.258 3.742 16 O -0.503 6.503 17 C -0.250 4.250 18 S 0.167 5.833 19 C -0.178 4.178 20 C -0.210 4.210 21 C -0.076 4.076 22 C -0.233 4.233 23 C 0.091 3.909 24 O -0.249 6.249 25 C -0.077 4.077 26 C -0.181 4.181 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.153 0.847 30 H 0.144 0.856 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.144 0.856 34 H 0.128 0.872 35 H 0.146 0.854 36 H 0.176 0.824 37 H 0.179 0.821 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.137 0.863 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.263 10.993 4.636 13.040 hybrid contribution -0.058 0.716 -2.185 2.300 sum 5.205 11.709 2.451 13.046 Atomic orbital electron populations 1.23304 0.76119 1.04932 1.01196 1.86420 1.24158 1.33668 1.84996 1.24037 0.92609 0.80832 0.69621 1.90490 1.67355 1.37727 1.46950 1.20578 0.87194 0.85272 1.04174 1.43514 1.56459 1.08459 1.06239 1.20099 1.35342 1.11137 0.82262 0.86236 1.26140 0.94744 0.96646 1.02614 1.69959 1.22954 1.31083 1.28861 0.84860 0.77632 0.79571 0.75900 1.19276 1.21735 1.17983 1.19774 0.82675 0.87834 0.83881 1.90557 1.56562 1.70634 1.32547 1.23430 1.07174 0.96790 0.97613 1.86109 1.83546 1.03013 1.10642 1.21847 1.01750 0.97503 0.96683 1.21378 1.05952 0.98249 0.95416 1.21196 0.94662 0.91836 0.99886 1.21545 1.08187 1.02487 0.91059 1.18868 0.95156 0.89811 0.87031 1.86054 1.83197 1.24430 1.31205 1.23398 1.00350 0.78794 1.05164 1.19907 1.07982 0.91975 0.98255 0.93203 0.93531 0.84677 0.85626 0.88885 0.91562 0.85597 0.87192 0.85362 0.82445 0.82144 0.91294 0.91433 0.86302 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.29 10.56 113.37 1.20 2.49 16 2 O -0.38 -16.09 10.57 -51.43 -0.54 -16.64 16 3 C 0.49 24.32 6.13 71.23 0.44 24.76 16 4 O -0.54 -30.47 15.76 21.98 0.35 -30.12 16 5 C 0.15 7.34 5.14 85.63 0.44 7.78 16 6 N -0.43 -21.14 2.18 -639.61 -1.39 -22.53 16 7 C -0.36 -17.14 9.14 84.04 0.77 -16.38 16 8 H 0.12 5.12 6.56 -2.91 -0.02 5.10 16 9 C 0.00 0.08 4.88 84.93 0.41 0.49 16 10 N -0.89 -44.69 9.27 21.66 0.20 -44.49 16 11 Si 1.00 36.73 29.60 68.60 2.03 38.76 16 12 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 13 H -0.29 -11.05 7.11 99.48 0.71 -10.34 16 14 H -0.26 -8.84 7.11 99.48 0.71 -8.14 16 15 C 0.47 22.91 7.44 87.66 0.65 23.56 16 16 O -0.62 -33.12 15.55 -3.05 -0.05 -33.17 16 17 C -0.10 -3.97 3.27 71.24 0.23 -3.74 16 18 S -0.08 -2.99 21.06 -56.49 -1.19 -4.18 16 19 C -0.06 -2.07 6.11 22.61 0.14 -1.93 16 20 C -0.19 -5.23 9.36 22.43 0.21 -5.02 16 21 C -0.06 -1.23 10.03 22.23 0.22 -1.00 16 22 C -0.21 -4.31 9.04 22.40 0.20 -4.11 16 23 C 0.14 3.48 6.68 22.48 0.15 3.64 16 24 O -0.33 -7.45 10.49 -92.52 -0.97 -8.42 16 25 C 0.02 0.20 9.81 113.37 1.11 1.31 16 26 C -0.16 -4.69 9.73 22.50 0.22 -4.47 16 27 H 0.05 1.70 8.13 -2.38 -0.02 1.68 16 28 H 0.05 1.66 8.13 -2.39 -0.02 1.64 16 29 H 0.14 3.22 8.14 -2.39 -0.02 3.20 16 30 H 0.13 5.89 6.38 -2.39 -0.02 5.87 16 31 H 0.09 4.19 7.61 -2.39 -0.02 4.17 16 32 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 33 H 0.13 4.40 7.29 -2.39 -0.02 4.38 16 34 H 0.11 4.36 7.71 -2.39 -0.02 4.34 16 35 H 0.13 3.55 5.87 -2.91 -0.02 3.53 16 36 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.16 2.10 6.29 -2.91 -0.02 2.08 16 38 H 0.07 0.63 7.66 -2.38 -0.02 0.61 16 39 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 40 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -69.95 363.10 5.89 -64.06 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 1.07 Total: 29.38 kcal Atomic # 6 Polarization: 20.97 SS G_CDS: 6.40 Total: 27.36 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: -1.19 Total: -67.02 kcal Atomic # 8 Polarization: -87.14 SS G_CDS: -1.22 Total: -88.35 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.76 kcal Atomic # 16 Polarization: -2.99 SS G_CDS: -1.19 Total: -4.18 kcal Total: -69.95 5.89 -64.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348801077.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.035 kcal (2) G-P(sol) polarization free energy of solvation -69.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds