Wall clock time and date at job start Tue Mar 31 2020 22:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 114.00027 * 2 1 4 4 C 1.52998 * 109.47075 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46966 * 185.00075 * 4 3 2 6 6 N 1.46493 * 109.47079 * 65.00158 * 4 3 2 7 7 C 1.34783 * 120.00266 * 84.99728 * 6 4 3 8 8 O 1.21554 * 119.99505 * 0.02562 * 7 6 4 9 9 C 1.47857 * 120.00551 * 180.02562 * 7 6 4 10 10 C 1.39674 * 120.09834 * 0.02598 * 9 7 6 11 11 C 1.38046 * 120.04015 * 179.97438 * 10 9 7 12 12 C 1.38176 * 120.23908 * 359.76355 * 11 10 9 13 13 C 1.39179 * 120.20513 * 0.51284 * 12 11 10 14 14 S 1.76194 * 120.02163 * 179.73865 * 13 12 11 15 15 C 1.76196 * 100.00182 * 265.25136 * 14 13 12 16 16 H 1.08000 * 120.00393 * 5.12593 * 15 14 13 17 17 C 1.38736 * 120.00006 * 185.12109 * 15 14 13 18 18 N 1.31616 * 119.99932 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99686 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47166 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46857 * 120.00071 * 19 17 15 22 22 H 1.48498 * 109.46876 * 239.99864 * 19 17 15 23 23 C 1.38875 * 119.95687 * 359.47003 * 13 12 11 24 24 C 1.50700 * 109.47118 * 305.00282 * 4 3 2 25 25 O 1.20830 * 120.00089 * 119.99952 * 24 4 3 26 26 O 1.34228 * 120.00103 * 299.99826 * 24 4 3 27 27 C 1.45195 * 117.00282 * 180.02562 * 26 24 4 28 28 H 1.08992 * 109.47127 * 300.00043 * 1 2 3 29 29 H 1.08998 * 109.46645 * 59.99678 * 1 2 3 30 30 H 1.08999 * 109.46978 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46762 * 59.99800 * 3 2 1 32 32 H 1.09000 * 109.47482 * 300.00066 * 3 2 1 33 33 H 0.97000 * 120.00523 * 265.00431 * 6 4 3 34 34 H 1.08002 * 119.98410 * 359.97438 * 10 9 7 35 35 H 1.07996 * 119.87866 * 180.02562 * 11 10 9 36 36 H 1.08006 * 119.89861 * 180.27092 * 12 11 10 37 37 H 0.97004 * 119.99833 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.12505 * 180.25503 * 23 13 12 39 39 H 1.09006 * 109.46799 * 300.00313 * 27 26 24 40 40 H 1.08996 * 109.47336 * 59.99712 * 27 26 24 41 41 H 1.08997 * 109.47684 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9785 2.1765 0.0902 6 7 3.9767 0.5640 -1.2508 7 6 4.1663 1.3222 -2.3489 8 8 3.9717 2.5211 -2.3006 9 6 4.6111 0.6958 -3.6122 10 6 4.8348 -0.6817 -3.6702 11 6 5.2496 -1.2654 -4.8505 12 6 5.4404 -0.4922 -5.9797 13 6 5.2259 0.8821 -5.9318 14 16 5.4774 1.8643 -7.3727 15 6 7.1349 2.3943 -7.0964 16 1 7.6907 2.0117 -6.2532 17 6 7.7260 3.3031 -7.9621 18 7 7.0488 3.7690 -8.9901 19 14 9.4835 3.8644 -7.6695 20 1 10.0206 3.1976 -6.4563 21 1 10.3195 3.5059 -8.8433 22 1 9.5072 5.3366 -7.4761 23 6 4.8083 1.4780 -4.7489 24 6 3.9714 0.3327 1.1648 25 8 4.5875 -0.6882 0.9691 26 8 3.6754 0.7080 2.4191 27 6 4.1273 -0.1607 3.4911 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 4.1323 -0.3927 -1.2894 34 1 4.6833 -1.2906 -2.7912 35 1 5.4214 -2.3308 -4.8925 36 1 5.7607 -0.9553 -6.9014 37 1 7.4620 4.4047 -9.5951 38 1 4.6371 2.5436 -4.7098 39 1 3.6845 -1.1492 3.3689 40 1 5.2137 -0.2428 3.4587 41 1 3.8235 0.2578 4.4506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351799489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:28 Heat of formation + Delta-G solvation = -136.093308 kcal Electronic energy + Delta-G solvation = -26355.184966 eV Core-core repulsion = 22327.000757 eV Total energy + Delta-G solvation = -4028.184209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.16226 -39.90259 -38.34198 -37.70851 -36.91574 -34.88705 -32.50182 -31.73381 -30.57367 -29.87706 -28.09765 -26.72183 -25.56386 -24.69963 -23.48300 -22.28513 -21.14212 -20.42949 -18.84662 -17.76820 -17.66541 -17.13938 -16.91772 -16.66163 -16.00175 -15.80765 -15.71208 -15.25407 -14.93944 -14.84404 -14.46291 -14.25338 -13.87472 -13.71374 -13.42519 -13.23034 -12.96127 -12.68203 -12.64505 -12.39425 -12.20656 -11.73278 -11.63245 -11.19207 -11.15321 -11.11916 -11.09802 -10.86965 -10.69248 -10.13344 -9.98554 -9.83791 -9.42695 -9.16386 -9.01320 -8.59901 -8.01730 -6.70745 -6.28171 -4.01912 1.13539 1.67976 1.78594 2.04594 2.93077 3.02997 3.20007 3.22738 3.29527 3.34896 3.47664 4.08287 4.21096 4.25971 4.50978 4.70155 4.73480 4.82508 4.87269 5.01469 5.04086 5.07882 5.08355 5.13025 5.15565 5.24233 5.27295 5.36198 5.48213 5.73923 5.87470 5.89916 5.98368 6.09112 6.26320 6.57897 6.65912 6.69063 6.93043 7.18904 7.27695 7.38507 7.58707 8.13128 8.33852 9.17976 10.78598 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016250 B = 0.002555 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.643108 B =10958.345674 C =11471.688192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.053 3.947 4 C 0.162 3.838 5 H 0.142 0.858 6 N -0.713 5.713 7 C 0.573 3.427 8 O -0.533 6.533 9 C -0.155 4.155 10 C -0.085 4.085 11 C -0.141 4.141 12 C -0.052 4.052 13 C -0.108 4.108 14 S -0.035 6.035 15 C -0.518 4.518 16 H 0.076 0.924 17 C 0.073 3.927 18 N -0.870 5.870 19 Si 0.921 3.079 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.279 1.279 23 C -0.016 4.016 24 C 0.471 3.529 25 O -0.496 6.496 26 O -0.354 6.354 27 C 0.037 3.963 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.413 0.587 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.132 0.868 37 H 0.269 0.731 38 H 0.140 0.860 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.599 -9.165 22.143 26.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.025 4.025 4 C 0.055 3.945 5 H 0.160 0.840 6 N -0.370 5.370 7 C 0.362 3.638 8 O -0.410 6.410 9 C -0.160 4.160 10 C -0.104 4.104 11 C -0.160 4.160 12 C -0.073 4.073 13 C -0.219 4.219 14 S 0.200 5.800 15 C -0.666 4.666 16 H 0.094 0.906 17 C -0.136 4.136 18 N -0.506 5.506 19 Si 0.747 3.253 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.204 1.204 23 C -0.038 4.038 24 C 0.312 3.688 25 O -0.382 6.382 26 O -0.269 6.269 27 C -0.057 4.057 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.251 0.749 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.150 0.850 37 H 0.079 0.921 38 H 0.158 0.842 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.125 -8.406 21.076 25.271 hybrid contribution 1.840 -0.366 1.401 2.341 sum -9.286 -8.772 22.478 25.854 Atomic orbital electron populations 1.22754 0.80287 1.02960 1.00285 1.87877 1.20405 1.27039 1.95555 1.22952 0.90764 0.85955 1.02875 1.20409 0.94543 0.97955 0.81557 0.84026 1.45643 1.70299 1.12758 1.08282 1.18429 0.75991 0.86194 0.83167 1.90778 1.51205 1.14392 1.84663 1.19705 1.08416 0.94295 0.93546 1.21203 0.97899 0.93333 0.98001 1.21070 1.02116 0.99855 0.93003 1.21980 0.93925 0.93332 0.98110 1.22837 1.00967 0.97312 1.00771 1.83605 1.19858 1.58362 1.18203 1.22884 0.96784 1.30866 1.16062 0.90552 1.25005 0.99097 0.94921 0.94580 1.69995 1.37017 1.29786 1.13774 0.86069 0.82260 0.78569 0.78426 1.19486 1.20490 1.20442 1.21936 0.91530 1.00343 0.89983 1.23354 0.76187 0.84890 0.84361 1.90672 1.37288 1.24815 1.85449 1.86457 1.72872 1.52071 1.15532 1.23313 1.00586 0.94356 0.87429 0.93883 0.93633 0.89482 0.90817 0.90543 0.74877 0.86285 0.85753 0.85016 0.92118 0.84219 0.91637 0.91700 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.04 10.13 -35.23 -0.36 -4.39 16 3 C 0.05 0.51 5.67 37.16 0.21 0.72 16 4 C 0.16 1.79 2.88 -69.09 -0.20 1.59 16 5 H 0.14 1.47 7.58 -51.93 -0.39 1.08 16 6 N -0.71 -9.18 4.85 -55.88 -0.27 -9.45 16 7 C 0.57 9.16 7.74 -12.32 -0.10 9.07 16 8 O -0.53 -9.85 16.01 5.32 0.09 -9.76 16 9 C -0.15 -2.64 5.87 -105.00 -0.62 -3.26 16 10 C -0.09 -1.24 9.54 -39.12 -0.37 -1.61 16 11 C -0.14 -2.09 10.02 -39.67 -0.40 -2.48 16 12 C -0.05 -0.95 9.79 -39.25 -0.38 -1.33 16 13 C -0.11 -2.31 5.45 -39.00 -0.21 -2.53 16 14 S -0.03 -0.90 21.40 -107.50 -2.30 -3.20 16 15 C -0.52 -14.64 9.46 30.92 0.29 -14.35 16 16 H 0.08 2.15 7.79 -52.49 -0.41 1.74 16 17 C 0.07 2.05 5.49 -17.46 -0.10 1.95 16 18 N -0.87 -25.45 13.22 55.49 0.73 -24.72 16 19 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 23 C -0.02 -0.33 9.34 -38.92 -0.36 -0.69 16 24 C 0.47 5.24 6.84 36.01 0.25 5.49 16 25 O -0.50 -6.60 15.59 -18.75 -0.29 -6.89 16 26 O -0.35 -3.26 10.49 -39.25 -0.41 -3.68 16 27 C 0.04 0.24 10.56 101.05 1.07 1.30 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.41 5.02 5.82 -40.82 -0.24 4.78 16 34 H 0.12 1.37 6.40 -52.49 -0.34 1.03 16 35 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.14 3.02 7.65 -52.49 -0.40 2.62 16 39 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 40 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 41 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 377.01 15.07 5.68 5.68 Total: -1.00 -34.04 377.01 -7.10 -41.14 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.14 Total: 3.55 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 0.19 Total: -4.78 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.46 Total: -34.16 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.98 Total: -24.73 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.04 -7.10 -41.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351799489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.949 kcal (2) G-P(sol) polarization free energy of solvation -34.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds