Wall clock time and date at job start Tue Mar 31 2020 22:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 114.00027 * 2 1 4 4 C 1.52998 * 109.47075 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46966 * 185.00075 * 4 3 2 6 6 N 1.46493 * 109.47079 * 65.00158 * 4 3 2 7 7 C 1.34783 * 120.00266 * 84.99728 * 6 4 3 8 8 O 1.21554 * 119.99505 * 0.02562 * 7 6 4 9 9 C 1.47857 * 120.00551 * 180.02562 * 7 6 4 10 10 C 1.39674 * 120.09834 * 0.02598 * 9 7 6 11 11 C 1.38046 * 120.04015 * 179.97438 * 10 9 7 12 12 C 1.38176 * 120.23908 * 359.76355 * 11 10 9 13 13 C 1.39179 * 120.20513 * 0.51284 * 12 11 10 14 14 S 1.76194 * 120.02163 * 179.73865 * 13 12 11 15 15 C 1.76196 * 100.00182 * 265.25136 * 14 13 12 16 16 H 1.08000 * 120.00393 * 5.12593 * 15 14 13 17 17 C 1.38736 * 120.00006 * 185.12109 * 15 14 13 18 18 N 1.31616 * 119.99932 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99686 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47166 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46857 * 120.00071 * 19 17 15 22 22 H 1.48498 * 109.46876 * 239.99864 * 19 17 15 23 23 C 1.38875 * 119.95687 * 359.47003 * 13 12 11 24 24 C 1.50700 * 109.47118 * 305.00282 * 4 3 2 25 25 O 1.20830 * 120.00089 * 119.99952 * 24 4 3 26 26 O 1.34228 * 120.00103 * 299.99826 * 24 4 3 27 27 C 1.45195 * 117.00282 * 180.02562 * 26 24 4 28 28 H 1.08992 * 109.47127 * 300.00043 * 1 2 3 29 29 H 1.08998 * 109.46645 * 59.99678 * 1 2 3 30 30 H 1.08999 * 109.46978 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46762 * 59.99800 * 3 2 1 32 32 H 1.09000 * 109.47482 * 300.00066 * 3 2 1 33 33 H 0.97000 * 120.00523 * 265.00431 * 6 4 3 34 34 H 1.08002 * 119.98410 * 359.97438 * 10 9 7 35 35 H 1.07996 * 119.87866 * 180.02562 * 11 10 9 36 36 H 1.08006 * 119.89861 * 180.27092 * 12 11 10 37 37 H 0.97004 * 119.99833 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.12505 * 180.25503 * 23 13 12 39 39 H 1.09006 * 109.46799 * 300.00313 * 27 26 24 40 40 H 1.08996 * 109.47336 * 59.99712 * 27 26 24 41 41 H 1.08997 * 109.47684 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9785 2.1765 0.0902 6 7 3.9767 0.5640 -1.2508 7 6 4.1663 1.3222 -2.3489 8 8 3.9717 2.5211 -2.3006 9 6 4.6111 0.6958 -3.6122 10 6 4.8348 -0.6817 -3.6702 11 6 5.2496 -1.2654 -4.8505 12 6 5.4404 -0.4922 -5.9797 13 6 5.2259 0.8821 -5.9318 14 16 5.4774 1.8643 -7.3727 15 6 7.1349 2.3943 -7.0964 16 1 7.6907 2.0117 -6.2532 17 6 7.7260 3.3031 -7.9621 18 7 7.0488 3.7690 -8.9901 19 14 9.4835 3.8644 -7.6695 20 1 10.0206 3.1976 -6.4563 21 1 10.3195 3.5059 -8.8433 22 1 9.5072 5.3366 -7.4761 23 6 4.8083 1.4780 -4.7489 24 6 3.9714 0.3327 1.1648 25 8 4.5875 -0.6882 0.9691 26 8 3.6754 0.7080 2.4191 27 6 4.1273 -0.1607 3.4911 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 4.1323 -0.3927 -1.2894 34 1 4.6833 -1.2906 -2.7912 35 1 5.4214 -2.3308 -4.8925 36 1 5.7607 -0.9553 -6.9014 37 1 7.4620 4.4047 -9.5951 38 1 4.6371 2.5436 -4.7098 39 1 3.6845 -1.1492 3.3689 40 1 5.2137 -0.2428 3.4587 41 1 3.8235 0.2578 4.4506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351799489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:28 Heat of formation + Delta-G solvation = -159.005926 kcal Electronic energy + Delta-G solvation = -26356.178531 eV Core-core repulsion = 22327.000757 eV Total energy + Delta-G solvation = -4029.177775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.07904 -41.06571 -39.39660 -38.74982 -37.74593 -35.95394 -34.64873 -32.93016 -31.96454 -30.98128 -28.67841 -27.73998 -27.36887 -25.62161 -24.62896 -23.66770 -22.14418 -21.55237 -20.22597 -19.41868 -18.62789 -18.07762 -17.92783 -17.46481 -17.07664 -16.93125 -16.77986 -16.60399 -16.52934 -16.07894 -15.68122 -15.50744 -15.10708 -14.79446 -14.62073 -14.47931 -14.00866 -13.86570 -13.40220 -13.38180 -13.23778 -13.06545 -12.97903 -12.96759 -12.67144 -12.39738 -12.36397 -11.86885 -11.75123 -11.71921 -11.33867 -11.21204 -10.78800 -10.73302 -10.52215 -9.96523 -9.71560 -8.79853 -8.39012 -6.18632 -0.23479 0.23953 0.94079 1.19454 1.30173 1.36697 1.46644 1.61888 1.74857 2.03552 2.24329 2.62904 2.77500 2.94200 3.39451 3.42349 3.58788 3.72185 3.92156 3.99196 4.08496 4.23942 4.29745 4.33500 4.35444 4.40151 4.46090 4.52689 4.55884 4.64370 4.71078 4.85098 4.90592 4.99917 5.18551 5.19269 5.31118 5.39484 5.48206 5.82651 6.02465 6.16718 6.23431 6.48274 6.92438 7.01801 8.68294 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016250 B = 0.002555 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.643108 B =10958.345674 C =11471.688192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.057 3.943 4 C 0.155 3.845 5 H 0.146 0.854 6 N -0.698 5.698 7 C 0.575 3.425 8 O -0.565 6.565 9 C -0.157 4.157 10 C -0.065 4.065 11 C -0.121 4.121 12 C -0.059 4.059 13 C -0.129 4.129 14 S -0.090 6.090 15 C -0.535 4.535 16 H 0.067 0.933 17 C 0.020 3.980 18 N -0.906 5.906 19 Si 0.992 3.008 20 H -0.267 1.267 21 H -0.266 1.266 22 H -0.272 1.272 23 C -0.038 4.038 24 C 0.477 3.523 25 O -0.520 6.520 26 O -0.352 6.352 27 C 0.029 3.971 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.418 0.582 34 H 0.161 0.839 35 H 0.173 0.827 36 H 0.137 0.863 37 H 0.274 0.726 38 H 0.110 0.890 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.361 -11.220 24.951 29.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C -0.021 4.021 4 C 0.049 3.951 5 H 0.164 0.836 6 N -0.354 5.354 7 C 0.364 3.636 8 O -0.445 6.445 9 C -0.162 4.162 10 C -0.083 4.083 11 C -0.141 4.141 12 C -0.080 4.080 13 C -0.240 4.240 14 S 0.144 5.856 15 C -0.682 4.682 16 H 0.085 0.915 17 C -0.185 4.185 18 N -0.542 5.542 19 Si 0.814 3.186 20 H -0.191 1.191 21 H -0.191 1.191 22 H -0.197 1.197 23 C -0.059 4.059 24 C 0.320 3.680 25 O -0.409 6.409 26 O -0.267 6.267 27 C -0.064 4.064 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.083 0.917 33 H 0.258 0.742 34 H 0.179 0.821 35 H 0.190 0.810 36 H 0.155 0.845 37 H 0.083 0.917 38 H 0.128 0.872 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.914 -10.485 23.919 28.305 hybrid contribution 1.644 0.144 0.718 1.799 sum -9.271 -10.341 24.637 28.282 Atomic orbital electron populations 1.22927 0.78832 1.03974 1.01048 1.87841 1.22026 1.27219 1.95706 1.22906 0.89589 0.86057 1.03517 1.20611 0.95704 0.98017 0.80760 0.83647 1.45463 1.69006 1.12725 1.08170 1.18247 0.75905 0.85821 0.83579 1.90765 1.52775 1.15773 1.85150 1.19809 1.08048 0.95392 0.92917 1.21668 0.95035 0.92202 0.99416 1.21516 0.99540 1.01752 0.91259 1.22088 0.94001 0.91960 0.99915 1.22507 1.04331 0.98169 0.99010 1.83483 1.19544 1.60260 1.22283 1.23093 0.97907 1.31322 1.15891 0.91502 1.25990 1.03623 0.94789 0.94116 1.70109 1.39006 1.30415 1.14687 0.85005 0.76754 0.78194 0.78675 1.19112 1.19112 1.19680 1.21638 0.93609 0.99476 0.91227 1.23235 0.75567 0.84271 0.84950 1.90658 1.38534 1.25830 1.85877 1.86449 1.72529 1.52508 1.15218 1.23628 1.00647 0.94405 0.87671 0.92242 0.93767 0.88404 0.88320 0.91735 0.74222 0.82114 0.80953 0.84493 0.91691 0.87162 0.91656 0.91839 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -7.61 10.13 -148.98 -1.51 -9.12 16 3 C 0.06 1.01 5.67 71.98 0.41 1.41 16 4 C 0.16 3.18 2.88 44.25 0.13 3.31 16 5 H 0.15 2.88 7.58 -2.39 -0.02 2.87 16 6 N -0.70 -16.79 4.85 -448.97 -2.18 -18.97 16 7 C 0.58 18.14 7.74 86.79 0.67 18.81 16 8 O -0.57 -21.33 16.01 -3.89 -0.06 -21.39 16 9 C -0.16 -5.25 5.87 -20.11 -0.12 -5.36 16 10 C -0.06 -1.66 9.54 22.57 0.22 -1.45 16 11 C -0.12 -3.16 10.02 22.21 0.22 -2.93 16 12 C -0.06 -2.08 9.79 22.48 0.22 -1.86 16 13 C -0.13 -5.71 5.45 22.65 0.12 -5.58 16 14 S -0.09 -4.93 21.40 -56.49 -1.21 -6.14 16 15 C -0.53 -31.42 9.46 67.94 0.64 -30.78 16 16 H 0.07 3.91 7.79 -2.91 -0.02 3.88 16 17 C 0.02 1.15 5.49 84.84 0.47 1.62 16 18 N -0.91 -54.59 13.22 21.64 0.29 -54.31 16 19 Si 0.99 44.80 29.55 68.60 2.03 46.83 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 C -0.04 -1.59 9.34 22.70 0.21 -1.38 16 24 C 0.48 9.67 6.84 71.24 0.49 10.16 16 25 O -0.52 -12.77 15.59 21.95 0.34 -12.43 16 26 O -0.35 -5.65 10.49 -51.40 -0.54 -6.19 16 27 C 0.03 0.30 10.56 113.37 1.20 1.50 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.42 9.01 5.82 -92.71 -0.54 8.47 16 34 H 0.16 2.86 6.40 -2.91 -0.02 2.84 16 35 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.14 4.61 8.06 -2.91 -0.02 4.59 16 37 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 38 H 0.11 5.19 7.65 -2.91 -0.02 5.17 16 39 H 0.06 0.70 8.13 -2.38 -0.02 0.68 16 40 H 0.06 0.69 8.13 -2.39 -0.02 0.68 16 41 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -77.74 377.01 3.81 -73.93 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.53 Total: 18.71 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 6.12 Total: -10.93 kcal Atomic # 7 Polarization: -71.38 SS G_CDS: -1.89 Total: -73.28 kcal Atomic # 8 Polarization: -47.37 SS G_CDS: -1.77 Total: -49.13 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: -4.93 SS G_CDS: -1.21 Total: -6.14 kcal Total: -77.74 3.81 -73.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351799489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.076 kcal (2) G-P(sol) polarization free energy of solvation -77.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds