Wall clock time and date at job start Tue Mar 31 2020 23:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 120.00184 * 2 1 4 4 H 1.48491 * 109.47267 * 270.00014 * 3 2 1 5 5 H 1.48501 * 109.46615 * 30.00310 * 3 2 1 6 6 H 1.48498 * 109.47151 * 149.99756 * 3 2 1 7 7 C 1.38956 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99552 * 0.02562 * 7 2 1 9 9 N 1.37092 * 120.00005 * 179.97438 * 7 2 1 10 10 C 1.34775 * 119.99835 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00144 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00106 * 180.02562 * 10 9 7 13 13 N 1.46506 * 109.47291 * 180.02562 * 12 10 9 14 14 S 1.65600 * 119.99863 * 165.00104 * 13 12 10 15 15 O 1.42092 * 106.40301 * 311.46191 * 14 13 12 16 16 O 1.42099 * 106.39758 * 178.53901 * 14 13 12 17 17 N 1.65602 * 107.21948 * 65.00236 * 14 13 12 18 18 C 1.47229 * 121.33898 * 269.97802 * 17 14 13 19 19 C 1.52788 * 107.90294 * 115.75515 * 18 17 14 20 20 C 1.50600 * 110.85096 * 47.47836 * 19 18 17 21 21 C 1.38978 * 117.61661 * 160.55564 * 20 19 18 22 22 C 1.37908 * 120.58610 * 179.51531 * 21 20 19 23 23 C 1.38268 * 119.82223 * 359.59838 * 22 21 20 24 24 C 1.37952 * 119.71745 * 0.46491 * 23 22 21 25 25 C 1.37669 * 122.86219 * 339.97470 * 20 19 18 26 26 C 1.46682 * 121.34021 * 89.99617 * 17 14 13 27 27 H 0.97006 * 120.00212 * 0.02562 * 1 2 3 28 28 H 0.96994 * 120.00394 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.46913 * 60.00394 * 12 10 9 30 30 H 1.08999 * 109.47546 * 300.00500 * 12 10 9 31 31 H 0.97000 * 119.99621 * 344.99840 * 13 12 10 32 32 H 1.09000 * 109.77479 * 235.35741 * 18 17 14 33 33 H 1.09005 * 109.77577 * 356.15548 * 18 17 14 34 34 H 1.08998 * 109.20368 * 167.83192 * 19 18 17 35 35 H 1.09001 * 109.20136 * 287.17066 * 19 18 17 36 36 H 1.08002 * 119.70835 * 359.29851 * 21 20 19 37 37 H 1.08002 * 120.09155 * 179.88389 * 22 21 20 38 38 H 1.08007 * 120.13747 * 180.47859 * 23 22 21 39 39 H 1.08002 * 119.74272 * 179.81483 * 24 23 22 40 40 H 1.08998 * 109.43769 * 104.26205 * 26 17 14 41 41 H 1.09004 * 109.43902 * 344.39562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4401 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0014 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3705 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5606 -2.3706 -0.0011 13 7 6.0490 -3.7518 -0.0017 14 16 7.6311 -4.0705 -0.3730 15 8 7.9156 -3.3531 -1.5661 16 8 7.7957 -5.4769 -0.2536 17 7 8.5606 -3.3884 0.8157 18 6 9.0511 -2.0046 0.7049 19 6 8.4127 -1.1887 1.8279 20 6 8.5242 -1.9104 3.1449 21 6 8.3793 -1.1594 4.3054 22 6 8.4602 -1.7596 5.5443 23 6 8.6790 -3.1218 5.6355 24 6 8.8245 -3.8696 4.4853 25 6 8.7487 -3.2655 3.2376 26 6 8.9287 -4.1386 2.0212 27 1 -0.4851 0.8401 -0.0004 28 1 3.8648 -0.3634 -0.0007 29 1 5.9240 -1.8568 0.8890 30 1 5.9241 -1.8567 -0.8910 31 1 5.4456 -4.4796 0.2154 32 1 10.1360 -1.9885 0.8082 33 1 8.7658 -1.5885 -0.2614 34 1 8.9176 -0.2256 1.9029 35 1 7.3600 -1.0244 1.5978 36 1 8.2054 -0.0957 4.2363 37 1 8.3483 -1.1681 6.4410 38 1 8.7355 -3.5984 6.6031 39 1 8.9985 -4.9331 4.5561 40 1 9.9705 -4.4510 1.9500 41 1 8.2920 -5.0189 2.1092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352512580.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:01 Heat of formation + Delta-G solvation = -106.830676 kcal Electronic energy + Delta-G solvation = -27704.881130 eV Core-core repulsion = 23710.258595 eV Total energy + Delta-G solvation = -3994.622535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.83652 -40.42991 -38.50291 -37.54985 -37.06030 -36.37962 -35.43684 -33.80881 -33.74359 -32.09399 -30.19791 -28.95953 -26.14733 -25.98844 -24.62682 -23.09145 -21.64568 -21.44127 -20.55344 -20.04783 -19.12932 -18.59613 -17.79112 -17.34031 -17.25164 -16.74614 -16.58267 -16.27149 -16.10929 -15.72048 -15.49293 -15.19731 -14.98818 -14.65312 -14.34149 -14.25452 -14.08463 -14.01860 -13.73523 -13.54985 -13.44914 -13.29230 -13.20011 -12.96459 -12.95974 -12.70072 -12.42484 -12.39425 -11.97295 -11.86709 -11.58142 -11.55165 -10.80107 -10.52124 -10.29876 -10.24578 -9.59320 -9.43361 -8.43178 -6.05869 -0.57790 0.47271 0.51794 1.31298 1.37073 1.46502 1.72574 1.83003 2.23474 2.42211 2.78472 2.86868 3.12461 3.22065 3.60778 3.78864 3.84659 3.98625 4.04388 4.14684 4.18880 4.31789 4.34402 4.42364 4.52050 4.60769 4.64005 4.67372 4.77853 4.85071 4.99708 5.14196 5.17087 5.28753 5.41297 5.51068 5.62202 5.68220 5.77210 5.84238 5.96090 6.16497 6.52531 6.81471 7.31302 7.83704 8.73728 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010649 B = 0.004065 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.717287 B = 6886.148577 C = 8329.617839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.960 3.040 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.222 1.222 7 C -0.333 4.333 8 H 0.057 0.943 9 N -0.578 5.578 10 C 0.444 3.556 11 O -0.617 6.617 12 C 0.114 3.886 13 N -1.116 6.116 14 S 2.814 3.186 15 O -0.993 6.993 16 O -1.000 7.000 17 N -1.001 6.001 18 C 0.111 3.889 19 C -0.106 4.106 20 C -0.078 4.078 21 C -0.130 4.130 22 C -0.129 4.129 23 C -0.131 4.131 24 C -0.126 4.126 25 C -0.107 4.107 26 C 0.164 3.836 27 H 0.281 0.719 28 H 0.394 0.606 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.421 0.579 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.102 0.898 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.775 2.129 9.456 27.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.210 4.210 3 Si 0.780 3.220 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.145 1.145 7 C -0.462 4.462 8 H 0.075 0.925 9 N -0.219 5.219 10 C 0.231 3.769 11 O -0.502 6.502 12 C -0.016 4.016 13 N -0.878 5.878 14 S 2.821 3.179 15 O -0.977 6.977 16 O -0.984 6.984 17 N -0.842 5.842 18 C -0.013 4.013 19 C -0.144 4.144 20 C -0.078 4.078 21 C -0.148 4.148 22 C -0.147 4.147 23 C -0.149 4.149 24 C -0.144 4.144 25 C -0.109 4.109 26 C 0.039 3.961 27 H 0.090 0.910 28 H 0.230 0.770 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.257 0.743 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.101 0.899 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.120 0.880 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 25.602 1.194 8.604 27.036 hybrid contribution -0.985 0.495 0.512 1.216 sum 24.617 1.689 9.116 26.305 Atomic orbital electron populations 1.69798 1.08278 1.29465 1.49426 1.26146 0.96447 1.02838 0.95617 0.85436 0.79917 0.76530 0.80165 1.18091 1.20037 1.14500 1.19009 0.81229 0.95111 1.50894 0.92496 1.41912 1.05983 1.07427 1.66593 1.20641 0.90432 0.83737 0.82108 1.90540 1.70792 1.32766 1.56095 1.21074 0.91025 0.83908 1.05610 1.55646 1.29656 1.14189 1.88348 1.00939 0.71722 0.72087 0.73114 1.93573 1.84425 1.74910 1.44770 1.93579 1.85775 1.31794 1.87286 1.58014 1.66217 1.24618 1.35335 1.21762 1.01042 0.78564 0.99973 1.21047 1.02779 0.99621 0.90993 1.19664 0.99402 0.92925 0.95855 1.21463 1.00438 1.00830 0.92070 1.21393 0.99597 0.95431 0.98268 1.21346 1.00110 0.94482 0.99001 1.21298 1.00458 1.00916 0.91743 1.19912 1.01966 0.94152 0.94869 1.20303 1.02739 0.92610 0.80450 0.90994 0.77024 0.86497 0.86164 0.74301 0.88197 0.87560 0.86759 0.89918 0.84531 0.84576 0.84418 0.84557 0.88006 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.56 13.96 21.66 0.30 -54.26 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 3 Si 0.96 36.43 27.74 68.60 1.90 38.34 16 4 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 5 H -0.28 -10.46 7.11 99.48 0.71 -9.75 16 6 H -0.22 -6.73 6.52 99.48 0.65 -6.08 16 7 C -0.33 -18.84 10.16 84.04 0.85 -17.99 16 8 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 9 N -0.58 -25.78 5.09 -306.98 -1.56 -27.35 16 10 C 0.44 19.09 7.85 87.66 0.69 19.77 16 11 O -0.62 -32.73 15.30 -3.06 -0.05 -32.77 16 12 C 0.11 3.27 6.73 85.63 0.58 3.85 16 13 N -1.12 -32.61 5.99 -190.78 -1.14 -33.76 16 14 S 2.81 73.36 6.18 -56.49 -0.35 73.01 16 15 O -0.99 -29.57 16.29 -128.00 -2.09 -31.66 16 16 O -1.00 -31.37 17.06 -128.00 -2.18 -33.56 16 17 N -1.00 -18.68 3.32 -517.86 -1.72 -20.39 16 18 C 0.11 1.51 6.46 86.17 0.56 2.07 16 19 C -0.11 -1.36 5.86 29.75 0.17 -1.19 16 20 C -0.08 -1.31 5.76 -19.85 -0.11 -1.42 16 21 C -0.13 -2.06 9.59 22.37 0.21 -1.84 16 22 C -0.13 -2.00 10.04 22.20 0.22 -1.77 16 23 C -0.13 -2.04 10.05 22.21 0.22 -1.82 16 24 C -0.13 -2.06 9.62 22.35 0.22 -1.84 16 25 C -0.11 -1.89 5.82 -19.82 -0.12 -2.01 16 26 C 0.16 2.80 6.09 85.63 0.52 3.33 16 27 H 0.28 15.02 8.31 -92.70 -0.77 14.25 16 28 H 0.39 14.03 5.76 -92.71 -0.53 13.49 16 29 H 0.12 2.51 5.90 -2.39 -0.01 2.50 16 30 H 0.12 2.89 7.75 -2.39 -0.02 2.87 16 31 H 0.42 13.77 7.70 -96.74 -0.75 13.02 16 32 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.11 1.37 7.04 -2.38 -0.02 1.35 16 34 H 0.11 0.90 8.11 -2.39 -0.02 0.88 16 35 H 0.08 1.09 5.90 -2.39 -0.01 1.08 16 36 H 0.14 1.65 8.05 -2.91 -0.02 1.62 16 37 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.14 1.74 8.05 -2.91 -0.02 1.71 16 40 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.09 1.67 7.42 -2.39 -0.02 1.66 16 Total: -1.00 -81.45 350.98 -2.64 -84.09 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: -0.24 Total: 39.30 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 4.48 Total: -0.98 kcal Atomic # 7 Polarization: -131.64 SS G_CDS: -4.12 Total: -135.76 kcal Atomic # 8 Polarization: -93.67 SS G_CDS: -4.32 Total: -97.99 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 1.90 Total: 38.34 kcal Atomic # 16 Polarization: 73.36 SS G_CDS: -0.35 Total: 73.01 kcal Total: -81.45 -2.64 -84.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352512580.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.745 kcal (2) G-P(sol) polarization free energy of solvation -81.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds