Wall clock time and date at job start Tue Mar 31 2020 22:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36174 * 116.99947 * 2 1 4 4 C 1.46980 * 126.93039 * 89.97726 * 3 2 1 5 5 C 1.39385 * 134.32182 * 0.04623 * 4 3 2 6 6 C 1.36729 * 119.72664 * 179.97438 * 5 4 3 7 7 C 1.38755 * 120.41041 * 359.97438 * 6 5 4 8 8 C 1.37841 * 120.68636 * 359.97438 * 7 6 5 9 9 C 1.38962 * 119.81639 * 0.02562 * 8 7 6 10 10 O 1.34806 * 133.42784 * 180.02562 * 9 8 7 11 11 C 1.34272 * 126.93031 * 269.99794 * 3 2 1 12 12 C 1.50696 * 124.97274 * 359.96042 * 11 3 2 13 13 N 1.46501 * 109.47070 * 89.99996 * 12 11 3 14 14 S 1.65596 * 120.00100 * 165.00299 * 13 12 11 15 15 O 1.42103 * 104.27798 * 181.07062 * 14 13 12 16 16 O 1.42099 * 104.27974 * 308.92456 * 14 13 12 17 17 C 1.81400 * 104.45126 * 65.00025 * 14 13 12 18 18 C 1.53008 * 109.47082 * 180.02562 * 17 14 13 19 19 C 1.50701 * 109.46974 * 179.97438 * 18 17 14 20 20 H 1.08003 * 119.99820 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00049 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00139 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 119.99838 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47271 * 90.00398 * 23 21 19 25 25 H 1.48503 * 109.47140 * 210.00455 * 23 21 19 26 26 H 1.48501 * 109.47386 * 330.00116 * 23 21 19 27 27 H 1.09008 * 109.47163 * 300.00256 * 1 2 3 28 28 H 1.09004 * 109.47412 * 59.99874 * 1 2 3 29 29 H 1.08995 * 109.47268 * 180.02562 * 1 2 3 30 30 H 1.08006 * 120.14040 * 359.94341 * 5 4 3 31 31 H 1.08004 * 119.79837 * 180.02562 * 6 5 4 32 32 H 1.08003 * 119.65644 * 179.72716 * 7 6 5 33 33 H 1.08003 * 120.08869 * 179.97438 * 8 7 6 34 34 H 1.09000 * 109.47804 * 209.99855 * 12 11 3 35 35 H 1.09000 * 109.47288 * 329.99916 * 12 11 3 36 36 H 0.97000 * 119.99801 * 345.00221 * 13 12 11 37 37 H 1.09001 * 109.47054 * 300.00166 * 17 14 13 38 38 H 1.09001 * 109.47304 * 60.00328 * 17 14 13 39 39 H 1.08999 * 109.46583 * 299.99520 * 18 17 14 40 40 H 1.09001 * 109.46893 * 59.99942 * 18 17 14 41 41 H 0.96998 * 120.00086 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0472 1.2133 0.0000 4 6 2.4477 2.0004 1.1749 5 6 2.3517 1.8114 2.5525 6 6 2.8376 2.7652 3.4032 7 6 3.4254 3.9184 2.9034 8 6 3.5302 4.1223 1.5442 9 6 3.0427 3.1653 0.6624 10 8 3.0006 3.0802 -0.6824 11 6 2.4135 1.9321 -1.0733 12 6 2.2018 1.5146 -2.5057 13 7 0.9022 2.0057 -2.9705 14 16 0.5557 2.0264 -4.5897 15 8 -0.7521 2.5776 -4.6612 16 8 1.6647 2.6931 -5.1770 17 6 0.5365 0.2775 -5.0709 18 6 0.2240 0.1629 -6.5644 19 6 0.2086 -1.2900 -6.9643 20 1 0.4028 -2.0551 -6.2271 21 6 -0.0522 -1.6425 -8.2714 22 7 -0.0651 -2.9104 -8.6205 23 14 -0.3874 -0.3193 -9.5465 24 1 0.8917 0.0975 -10.1753 25 1 -1.2996 -0.8555 -10.5884 26 1 -1.0208 0.8522 -8.8895 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8949 0.9155 2.9465 31 1 2.7642 2.6198 4.4709 32 1 3.8012 4.6659 3.5864 33 1 3.9891 5.0237 1.1656 34 1 2.9924 1.9349 -3.1274 35 1 2.2250 0.4271 -2.5745 36 1 0.2446 2.3188 -2.3298 37 1 1.5117 -0.1656 -4.8691 38 1 -0.2272 -0.2486 -4.4982 39 1 -0.7511 0.6060 -6.7665 40 1 0.9880 0.6889 -7.1368 41 1 -0.2490 -3.1584 -9.5400 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353819530.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:32 Heat of formation + Delta-G solvation = -77.473389 kcal Electronic energy + Delta-G solvation = -26749.227750 eV Core-core repulsion = 22723.585491 eV Total energy + Delta-G solvation = -4025.642259 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.87455 -38.58128 -38.31303 -36.83553 -35.74670 -35.47797 -33.99282 -32.40238 -31.52226 -30.76370 -30.02473 -27.40140 -26.03051 -25.99248 -23.30507 -22.22982 -21.39692 -21.27053 -19.23821 -18.33371 -18.05801 -17.58395 -17.00865 -16.87867 -16.29936 -15.83175 -15.67185 -15.45569 -15.22188 -15.06898 -14.79782 -14.36124 -14.24854 -14.02212 -13.93740 -13.61178 -12.95801 -12.81091 -12.64430 -12.39372 -12.08900 -11.94112 -11.85166 -11.81472 -11.72653 -11.49126 -11.29054 -11.24888 -10.48900 -10.27909 -10.25175 -10.20156 -9.95581 -9.57329 -9.29273 -9.02739 -8.68463 -8.48412 -6.18641 -4.20270 0.33460 0.61687 0.95158 1.65689 2.23955 2.93776 3.22853 3.25205 3.32732 3.36446 3.41111 3.85841 4.03992 4.33888 4.36632 4.47977 4.55158 4.65178 4.76941 4.85295 4.90158 5.02364 5.04452 5.09214 5.13056 5.22916 5.32604 5.35165 5.45019 5.46140 5.59551 5.66093 5.81091 5.90976 6.04859 6.22319 6.24463 6.73690 6.76811 6.78037 6.90569 7.07798 7.51800 8.33832 8.82374 9.40799 10.93630 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.023393 B = 0.002599 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.650698 B =10771.325219 C =11408.034144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.298 6.298 3 C 0.026 3.974 4 C -0.147 4.147 5 C -0.061 4.061 6 C -0.138 4.138 7 C -0.089 4.089 8 C -0.107 4.107 9 C 0.065 3.935 10 O -0.174 6.174 11 C 0.016 3.984 12 C 0.192 3.808 13 N -1.125 6.125 14 S 2.588 3.412 15 O -0.961 6.961 16 O -0.961 6.961 17 C -0.581 4.581 18 C -0.007 4.007 19 C -0.520 4.520 20 H 0.079 0.921 21 C 0.072 3.928 22 N -0.895 5.895 23 Si 0.869 3.131 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.262 1.262 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.102 0.898 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.414 0.586 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.033 0.967 40 H 0.029 0.971 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.072 10.890 25.010 27.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.214 6.214 3 C -0.021 4.021 4 C -0.148 4.148 5 C -0.079 4.079 6 C -0.156 4.156 7 C -0.107 4.107 8 C -0.125 4.125 9 C 0.017 3.983 10 O -0.075 6.075 11 C -0.034 4.034 12 C 0.067 3.933 13 N -0.882 5.882 14 S 2.686 3.314 15 O -0.952 6.952 16 O -0.951 6.951 17 C -0.714 4.714 18 C -0.047 4.047 19 C -0.559 4.559 20 H 0.097 0.903 21 C -0.131 4.131 22 N -0.533 5.533 23 Si 0.695 3.305 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.186 1.186 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.120 0.880 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.248 0.752 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.229 11.540 24.029 27.164 hybrid contribution -0.590 0.028 -0.105 0.599 sum 4.639 11.568 23.924 26.975 Atomic orbital electron populations 1.23197 0.78530 1.03981 1.01055 1.86136 1.20166 1.21513 1.93581 1.19001 1.03856 0.89348 0.89929 1.20040 1.04695 0.95492 0.94623 1.20298 0.98004 0.99219 0.90347 1.20819 1.00338 0.94361 1.00073 1.20987 0.98258 0.97738 0.93699 1.20005 1.02968 0.98366 0.91202 1.19490 1.01006 0.96545 0.81265 1.84141 1.66305 1.36268 1.20781 1.22272 0.99804 0.85216 0.96075 1.19789 0.86538 0.99973 0.87048 1.55954 1.22924 1.81683 1.27674 1.05756 0.74133 0.79237 0.72281 1.93574 1.39568 1.77459 1.84572 1.93561 1.53852 1.72254 1.75454 1.30298 1.11065 1.20400 1.09659 1.19424 0.97515 1.01092 0.86631 1.20833 1.49764 0.89471 0.95823 0.90337 1.24984 0.94346 0.95400 0.98376 1.69876 1.48786 1.15883 1.18707 0.86928 0.79141 0.82622 0.81768 1.19648 1.20765 1.18630 0.93420 0.92931 0.87989 0.85366 0.85153 0.84569 0.84642 0.87577 0.87423 0.75243 0.85478 0.85268 0.94879 0.95265 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.14 101.05 1.13 1.35 16 2 O -0.30 -3.35 10.52 -20.29 -0.21 -3.57 16 3 C 0.03 0.30 6.51 -37.44 -0.24 0.06 16 4 C -0.15 -1.64 6.40 -105.08 -0.67 -2.31 16 5 C -0.06 -0.54 10.05 -39.70 -0.40 -0.94 16 6 C -0.14 -0.96 9.98 -39.94 -0.40 -1.36 16 7 C -0.09 -0.60 10.01 -39.54 -0.40 -0.99 16 8 C -0.11 -0.91 10.07 -39.46 -0.40 -1.31 16 9 C 0.06 0.73 7.41 -38.47 -0.29 0.44 16 10 O -0.17 -2.17 10.59 3.11 0.03 -2.14 16 11 C 0.02 0.19 6.65 -35.71 -0.24 -0.05 16 12 C 0.19 2.15 6.58 -5.20 -0.03 2.12 16 13 N -1.12 -13.59 5.88 -11.66 -0.07 -13.66 16 14 S 2.59 41.63 5.46 -107.50 -0.59 41.04 16 15 O -0.96 -18.13 18.08 -57.54 -1.04 -19.17 16 16 O -0.96 -18.13 17.50 -57.54 -1.01 -19.13 16 17 C -0.58 -9.94 6.01 37.16 0.22 -9.72 16 18 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 19 C -0.52 -14.18 9.66 -34.44 -0.33 -14.51 16 20 H 0.08 2.24 7.99 -52.48 -0.42 1.83 16 21 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 22 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 23 Si 0.87 21.20 27.47 -169.99 -4.67 16.53 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 26 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 27 H 0.05 0.36 8.14 -51.92 -0.42 -0.07 16 28 H 0.05 0.43 8.10 -51.93 -0.42 0.01 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 31 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 32 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 33 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.11 1.16 7.69 -51.93 -0.40 0.76 16 35 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.41 4.37 8.56 -34.47 -0.30 4.08 16 37 H 0.13 1.92 8.14 -51.92 -0.42 1.49 16 38 H 0.13 1.98 8.14 -51.92 -0.42 1.56 16 39 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 40 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -36.00 368.55 -8.76 -44.75 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.27 Total: 1.30 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -2.26 Total: -25.56 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.71 Total: -39.60 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -2.23 Total: -44.01 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Atomic # 16 Polarization: 41.63 SS G_CDS: -0.59 Total: 41.04 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.00 -8.76 -44.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353819530.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.723 kcal (2) G-P(sol) polarization free energy of solvation -35.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds