Wall clock time and date at job start Tue Mar 31 2020 22:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36174 * 116.99947 * 2 1 4 4 C 1.46980 * 126.93039 * 89.97726 * 3 2 1 5 5 C 1.39385 * 134.32182 * 0.04623 * 4 3 2 6 6 C 1.36729 * 119.72664 * 179.97438 * 5 4 3 7 7 C 1.38755 * 120.41041 * 359.97438 * 6 5 4 8 8 C 1.37841 * 120.68636 * 359.97438 * 7 6 5 9 9 C 1.38962 * 119.81639 * 0.02562 * 8 7 6 10 10 O 1.34806 * 133.42784 * 180.02562 * 9 8 7 11 11 C 1.34272 * 126.93031 * 269.99794 * 3 2 1 12 12 C 1.50696 * 124.97274 * 359.96042 * 11 3 2 13 13 N 1.46501 * 109.47070 * 89.99996 * 12 11 3 14 14 S 1.65596 * 120.00100 * 165.00299 * 13 12 11 15 15 O 1.42103 * 104.27798 * 181.07062 * 14 13 12 16 16 O 1.42099 * 104.27974 * 308.92456 * 14 13 12 17 17 C 1.81400 * 104.45126 * 65.00025 * 14 13 12 18 18 C 1.53008 * 109.47082 * 180.02562 * 17 14 13 19 19 C 1.50701 * 109.46974 * 179.97438 * 18 17 14 20 20 H 1.08003 * 119.99820 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00049 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00139 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 119.99838 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47271 * 90.00398 * 23 21 19 25 25 H 1.48503 * 109.47140 * 210.00455 * 23 21 19 26 26 H 1.48501 * 109.47386 * 330.00116 * 23 21 19 27 27 H 1.09008 * 109.47163 * 300.00256 * 1 2 3 28 28 H 1.09004 * 109.47412 * 59.99874 * 1 2 3 29 29 H 1.08995 * 109.47268 * 180.02562 * 1 2 3 30 30 H 1.08006 * 120.14040 * 359.94341 * 5 4 3 31 31 H 1.08004 * 119.79837 * 180.02562 * 6 5 4 32 32 H 1.08003 * 119.65644 * 179.72716 * 7 6 5 33 33 H 1.08003 * 120.08869 * 179.97438 * 8 7 6 34 34 H 1.09000 * 109.47804 * 209.99855 * 12 11 3 35 35 H 1.09000 * 109.47288 * 329.99916 * 12 11 3 36 36 H 0.97000 * 119.99801 * 345.00221 * 13 12 11 37 37 H 1.09001 * 109.47054 * 300.00166 * 17 14 13 38 38 H 1.09001 * 109.47304 * 60.00328 * 17 14 13 39 39 H 1.08999 * 109.46583 * 299.99520 * 18 17 14 40 40 H 1.09001 * 109.46893 * 59.99942 * 18 17 14 41 41 H 0.96998 * 120.00086 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0472 1.2133 0.0000 4 6 2.4477 2.0004 1.1749 5 6 2.3517 1.8114 2.5525 6 6 2.8376 2.7652 3.4032 7 6 3.4254 3.9184 2.9034 8 6 3.5302 4.1223 1.5442 9 6 3.0427 3.1653 0.6624 10 8 3.0006 3.0802 -0.6824 11 6 2.4135 1.9321 -1.0733 12 6 2.2018 1.5146 -2.5057 13 7 0.9022 2.0057 -2.9705 14 16 0.5557 2.0264 -4.5897 15 8 -0.7521 2.5776 -4.6612 16 8 1.6647 2.6931 -5.1770 17 6 0.5365 0.2775 -5.0709 18 6 0.2240 0.1629 -6.5644 19 6 0.2086 -1.2900 -6.9643 20 1 0.4028 -2.0551 -6.2271 21 6 -0.0522 -1.6425 -8.2714 22 7 -0.0651 -2.9104 -8.6205 23 14 -0.3874 -0.3193 -9.5465 24 1 0.8917 0.0975 -10.1753 25 1 -1.2996 -0.8555 -10.5884 26 1 -1.0208 0.8522 -8.8895 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8949 0.9155 2.9465 31 1 2.7642 2.6198 4.4709 32 1 3.8012 4.6659 3.5864 33 1 3.9891 5.0237 1.1656 34 1 2.9924 1.9349 -3.1274 35 1 2.2250 0.4271 -2.5745 36 1 0.2446 2.3188 -2.3298 37 1 1.5117 -0.1656 -4.8691 38 1 -0.2272 -0.2486 -4.4982 39 1 -0.7511 0.6060 -6.7665 40 1 0.9880 0.6889 -7.1368 41 1 -0.2490 -3.1584 -9.5400 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353819530.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:31 Heat of formation + Delta-G solvation = -104.219058 kcal Electronic energy + Delta-G solvation = -26750.387529 eV Core-core repulsion = 22723.585491 eV Total energy + Delta-G solvation = -4026.802038 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.63899 -39.36460 -38.96146 -38.24348 -37.11437 -36.51479 -35.87955 -33.46064 -33.12413 -31.41268 -30.81313 -28.12213 -27.88000 -26.79638 -23.99541 -23.20404 -22.91092 -22.07877 -20.49003 -19.44406 -19.06061 -18.87377 -18.27088 -17.75161 -17.33505 -17.08310 -16.66331 -16.37119 -16.31840 -16.01179 -15.84847 -15.74428 -15.25327 -14.91443 -14.82280 -14.74543 -14.68928 -13.81010 -13.75922 -13.29221 -13.27623 -13.17178 -13.10015 -13.06039 -12.95382 -12.89159 -12.74336 -12.22326 -12.09157 -11.94191 -11.70287 -11.36329 -11.02197 -10.96834 -10.82535 -10.62472 -9.70124 -9.21301 -8.34562 -6.39938 -0.84173 -0.23429 0.29606 0.88577 1.33616 1.35744 1.45196 1.48265 1.78105 2.31086 2.53189 2.70814 2.72206 2.99729 3.06810 3.24292 3.68235 3.83436 3.86676 3.97363 4.07153 4.12539 4.15809 4.32766 4.36937 4.40190 4.43232 4.54951 4.57886 4.61087 4.66896 4.80382 4.98994 5.09662 5.13526 5.17058 5.33677 5.46171 5.49320 5.62947 5.84181 6.03007 6.18809 6.30813 6.66753 7.24392 8.80836 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.023393 B = 0.002599 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.650698 B =10771.325219 C =11408.034144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.312 6.312 3 C 0.025 3.975 4 C -0.172 4.172 5 C -0.073 4.073 6 C -0.131 4.131 7 C -0.078 4.078 8 C -0.119 4.119 9 C 0.039 3.961 10 O -0.191 6.191 11 C -0.001 4.001 12 C 0.187 3.813 13 N -1.109 6.109 14 S 2.623 3.377 15 O -0.987 6.987 16 O -0.987 6.987 17 C -0.585 4.585 18 C -0.019 4.019 19 C -0.524 4.524 20 H 0.052 0.948 21 C 0.013 3.987 22 N -0.940 5.940 23 Si 0.924 3.076 24 H -0.262 1.262 25 H -0.276 1.276 26 H -0.248 1.248 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.117 0.883 30 H 0.138 0.862 31 H 0.162 0.838 32 H 0.172 0.828 33 H 0.151 0.849 34 H 0.107 0.893 35 H 0.127 0.873 36 H 0.423 0.577 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.301 12.539 27.182 30.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.228 6.228 3 C -0.022 4.022 4 C -0.173 4.173 5 C -0.092 4.092 6 C -0.149 4.149 7 C -0.096 4.096 8 C -0.137 4.137 9 C -0.008 4.008 10 O -0.094 6.094 11 C -0.051 4.051 12 C 0.062 3.938 13 N -0.870 5.870 14 S 2.720 3.280 15 O -0.978 6.978 16 O -0.977 6.977 17 C -0.717 4.717 18 C -0.058 4.058 19 C -0.563 4.563 20 H 0.070 0.930 21 C -0.186 4.186 22 N -0.580 5.580 23 Si 0.747 3.253 24 H -0.186 1.186 25 H -0.202 1.202 26 H -0.172 1.172 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.135 0.865 30 H 0.156 0.844 31 H 0.180 0.820 32 H 0.190 0.810 33 H 0.168 0.832 34 H 0.125 0.875 35 H 0.144 0.856 36 H 0.259 0.741 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.449 13.191 26.210 29.844 hybrid contribution -0.614 -0.510 -0.535 0.961 sum 4.835 12.681 25.675 29.041 Atomic orbital electron populations 1.23392 0.77200 1.05202 1.01597 1.86095 1.21510 1.21511 1.93712 1.19187 1.03425 0.89233 0.90392 1.20279 1.05798 0.95696 0.95529 1.20575 0.98531 1.00341 0.89705 1.21252 0.98648 0.93573 1.01447 1.21473 0.96568 0.98159 0.93361 1.20408 1.03044 0.98518 0.91779 1.19985 1.02149 0.97664 0.80980 1.84090 1.66883 1.36646 1.21752 1.22238 1.01056 0.85633 0.96151 1.19987 0.85697 1.01065 0.87074 1.55502 1.23719 1.81513 1.26270 1.04502 0.72866 0.77963 0.72679 1.93534 1.40991 1.77773 1.85480 1.93528 1.54731 1.72613 1.76825 1.30272 1.12854 1.22342 1.06223 1.19396 0.97732 0.98113 0.90555 1.21173 1.48448 0.91396 0.95308 0.92983 1.25864 0.94514 0.97425 1.00792 1.70005 1.50669 1.17960 1.19384 0.86042 0.79575 0.80335 0.79373 1.18629 1.20160 1.17193 0.92544 0.92773 0.86462 0.84390 0.82032 0.81043 0.83157 0.87488 0.85584 0.74092 0.83559 0.83534 0.94862 0.94888 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.14 113.37 1.26 1.58 16 2 O -0.31 -6.81 10.52 -95.53 -1.00 -7.82 16 3 C 0.02 0.58 6.51 23.66 0.15 0.73 16 4 C -0.17 -3.73 6.40 -20.16 -0.13 -3.86 16 5 C -0.07 -1.18 10.05 22.19 0.22 -0.96 16 6 C -0.13 -1.43 9.98 22.04 0.22 -1.21 16 7 C -0.08 -0.80 10.01 22.30 0.22 -0.58 16 8 C -0.12 -1.84 10.07 22.35 0.23 -1.62 16 9 C 0.04 0.87 7.41 22.99 0.17 1.04 16 10 O -0.19 -4.83 10.59 -11.78 -0.12 -4.95 16 11 C 0.00 -0.03 6.65 24.78 0.16 0.14 16 12 C 0.19 4.05 6.58 85.63 0.56 4.61 16 13 N -1.11 -25.63 5.88 -190.79 -1.12 -26.75 16 14 S 2.62 81.36 5.46 -56.49 -0.31 81.05 16 15 O -0.99 -36.13 18.08 -127.65 -2.31 -38.44 16 16 O -0.99 -36.26 17.50 -127.65 -2.23 -38.49 16 17 C -0.58 -19.35 6.01 71.98 0.43 -18.92 16 18 C -0.02 -0.85 4.05 29.85 0.12 -0.73 16 19 C -0.52 -28.84 9.66 25.60 0.25 -28.59 16 20 H 0.05 3.05 7.99 -2.91 -0.02 3.02 16 21 C 0.01 0.71 5.47 84.65 0.46 1.18 16 22 N -0.94 -57.25 13.96 21.45 0.30 -56.95 16 23 Si 0.92 43.31 27.47 68.60 1.88 45.19 16 24 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 26 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 27 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.05 0.83 8.10 -2.38 -0.02 0.81 16 29 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 32 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 33 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.11 2.29 7.69 -2.39 -0.02 2.28 16 35 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.42 8.50 8.56 -96.75 -0.83 7.67 16 37 H 0.15 4.22 8.14 -2.39 -0.02 4.20 16 38 H 0.15 4.30 8.14 -2.39 -0.02 4.28 16 39 H 0.03 1.49 7.20 -2.39 -0.02 1.47 16 40 H 0.03 1.45 7.57 -2.39 -0.02 1.44 16 41 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -78.47 368.55 -0.40 -78.86 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.18 Total: 15.50 kcal Atomic # 6 Polarization: -51.54 SS G_CDS: 4.34 Total: -47.20 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -0.82 Total: -83.70 kcal Atomic # 8 Polarization: -84.03 SS G_CDS: -5.67 Total: -89.70 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Atomic # 16 Polarization: 81.36 SS G_CDS: -0.31 Total: 81.05 kcal Total: -78.47 -0.40 -78.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353819530.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.357 kcal (2) G-P(sol) polarization free energy of solvation -78.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds