Wall clock time and date at job start Tue Mar 31 2020 23:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39717 * 120.08982 * 59.70721 * 3 2 1 5 5 C 1.38008 * 120.08192 * 180.02562 * 4 3 2 6 6 C 1.38159 * 120.28054 * 0.02562 * 5 4 3 7 7 C 1.39402 * 120.18780 * 359.97438 * 6 5 4 8 8 C 1.48465 * 120.04973 * 179.97438 * 7 6 5 9 9 C 1.42192 * 126.84217 * 5.27261 * 8 7 6 10 10 C 1.36611 * 103.79582 * 180.10679 * 9 8 7 11 11 C 1.47528 * 126.83609 * 179.90940 * 10 9 8 12 12 O 1.21586 * 119.99307 * 359.71443 * 11 10 9 13 13 N 1.34775 * 120.00449 * 179.71037 * 11 10 9 14 14 C 1.47066 * 136.05557 * 180.02562 * 13 11 10 15 15 C 1.53504 * 88.04678 * 152.88612 * 14 13 11 16 16 O 1.42897 * 114.20384 * 272.50597 * 15 14 13 17 17 C 1.50697 * 114.20578 * 139.68331 * 15 14 13 18 18 H 1.08005 * 119.99898 * 359.97438 * 17 15 14 19 19 C 1.37876 * 120.00143 * 180.02562 * 17 15 14 20 20 N 1.31512 * 119.99546 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 120.00178 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47007 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47307 * 120.00143 * 21 19 17 24 24 H 1.48500 * 109.46938 * 240.00170 * 21 19 17 25 25 C 1.47063 * 136.05633 * 0.05318 * 13 11 10 26 26 O 1.34652 * 106.33949 * 359.65138 * 10 9 8 27 27 N 1.20871 * 111.74098 * 0.23970 * 26 10 9 28 28 C 1.39073 * 119.90780 * 0.22900 * 7 6 5 29 29 H 1.07996 * 119.95671 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.85995 * 179.97438 * 5 4 3 31 31 H 1.08002 * 119.90851 * 179.97438 * 6 5 4 32 32 H 1.08007 * 128.10020 * 0.03072 * 9 8 7 33 33 H 1.09002 * 113.46793 * 267.69584 * 14 13 11 34 34 H 1.08999 * 113.46805 * 38.07951 * 14 13 11 35 35 H 0.96703 * 113.99737 * 179.97438 * 16 15 14 36 36 H 0.97005 * 119.99959 * 180.02562 * 20 19 17 37 37 H 1.08994 * 113.46736 * 321.86643 * 25 13 11 38 38 H 1.09003 * 113.46602 * 92.24602 * 25 13 11 39 39 H 1.08003 * 120.13767 * 179.72648 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2688 -0.6088 -1.0438 5 6 4.6489 -0.6086 -1.0434 6 6 5.3451 -0.0073 -0.0126 7 6 4.6575 0.6041 1.0346 8 6 5.4088 1.2488 2.1411 9 6 6.8176 1.4198 2.2289 10 6 6.9945 2.0572 3.4242 11 6 8.2763 2.4791 4.0204 12 8 9.3198 2.2601 3.4360 13 7 8.2907 3.1073 5.2127 14 6 9.3196 3.6637 6.1041 15 6 8.2602 4.6423 6.6299 16 8 8.1520 5.8501 5.8740 17 6 8.3142 4.8702 8.1185 18 1 9.0561 4.3613 8.7161 19 6 7.4159 5.7274 8.7178 20 7 6.5115 6.3458 7.9902 21 14 7.4833 6.0105 10.5630 22 1 8.5833 5.2023 11.1478 23 1 7.7275 7.4499 10.8344 24 1 6.1922 5.6037 11.1736 25 6 7.2844 3.5377 6.1950 26 8 5.7658 2.2288 3.9475 27 7 4.9057 1.7779 3.2278 28 6 3.2668 0.6048 1.0443 29 1 2.7298 -1.0807 -1.8520 30 1 5.1869 -1.0811 -1.8519 31 1 6.4251 -0.0110 -0.0181 32 1 7.5715 1.1158 1.5177 33 1 9.6698 2.9574 6.8569 34 1 10.1362 4.1524 5.5727 35 1 7.4835 6.4642 6.2076 36 1 5.8797 6.9492 8.4117 37 1 6.3703 3.9202 5.7409 38 1 7.0913 2.7974 6.9714 39 1 2.7304 1.0736 1.8560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356581860.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:19 Heat of formation + Delta-G solvation = 62.224342 kcal Electronic energy + Delta-G solvation = -27235.692099 eV Core-core repulsion = 23112.956389 eV Total energy + Delta-G solvation = -4122.735711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.105 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.09613 -41.33284 -40.50794 -39.26022 -37.69407 -36.00053 -35.58686 -34.11542 -33.38561 -32.41605 -31.65227 -30.51313 -27.50217 -26.89218 -25.47869 -25.35396 -24.05181 -23.43985 -21.70431 -20.88075 -19.67601 -19.14599 -18.88794 -18.47328 -17.57421 -17.33745 -17.21236 -16.92930 -16.38937 -16.22901 -15.96145 -15.60951 -15.22507 -15.07180 -14.83050 -14.60129 -14.48619 -14.26309 -14.17796 -13.97409 -13.78047 -13.72736 -13.40861 -12.97217 -12.80563 -12.76474 -12.52151 -12.29637 -12.21545 -12.14667 -11.96838 -11.69543 -11.14083 -10.97736 -10.68034 -10.28847 -10.05984 -9.74786 -9.71442 -8.26926 -6.43500 -0.49759 -0.29815 -0.06706 1.16333 1.38829 1.47646 1.49716 1.53033 1.62734 1.82235 1.93315 1.94781 2.41730 2.65960 2.76415 2.83677 2.94480 3.13022 3.56315 3.74190 3.80478 3.84288 3.98548 4.09380 4.11002 4.23073 4.40011 4.42675 4.59470 4.63089 4.74011 4.76329 4.84501 4.85643 4.93518 5.17233 5.22511 5.27698 5.35960 5.72578 5.74447 5.89889 6.33359 6.54082 6.63655 6.68914 6.95493 7.30296 7.47742 8.79623 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017221 B = 0.002358 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.575748 B =11872.162416 C =13170.781997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.277 3.723 3 C -0.040 4.040 4 C -0.043 4.043 5 C -0.103 4.103 6 C -0.052 4.052 7 C -0.040 4.040 8 C 0.058 3.942 9 C -0.129 4.129 10 C -0.079 4.079 11 C 0.618 3.382 12 O -0.555 6.555 13 N -0.623 5.623 14 C 0.115 3.885 15 C 0.218 3.782 16 O -0.585 6.585 17 C -0.547 4.547 18 H 0.081 0.919 19 C 0.030 3.970 20 N -0.918 5.918 21 Si 0.971 3.029 22 H -0.262 1.262 23 H -0.283 1.283 24 H -0.281 1.281 25 C 0.082 3.918 26 O 0.107 5.893 27 N -0.361 5.361 28 C -0.053 4.053 29 H 0.165 0.835 30 H 0.183 0.817 31 H 0.163 0.837 32 H 0.218 0.782 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.390 0.610 36 H 0.276 0.724 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.580 -14.271 -15.881 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.037 4.037 3 C -0.043 4.043 4 C -0.063 4.063 5 C -0.120 4.120 6 C -0.071 4.071 7 C -0.041 4.041 8 C -0.098 4.098 9 C -0.150 4.150 10 C -0.144 4.144 11 C 0.406 3.594 12 O -0.436 6.436 13 N -0.355 5.355 14 C -0.006 4.006 15 C 0.177 3.823 16 O -0.398 6.398 17 C -0.585 4.585 18 H 0.099 0.901 19 C -0.171 4.171 20 N -0.559 5.559 21 Si 0.796 3.204 22 H -0.186 1.186 23 H -0.209 1.209 24 H -0.207 1.207 25 C -0.040 4.040 26 O 0.035 5.965 27 N -0.063 5.063 28 C -0.075 4.075 29 H 0.183 0.817 30 H 0.200 0.800 31 H 0.181 0.819 32 H 0.235 0.765 33 H 0.134 0.866 34 H 0.086 0.914 35 H 0.246 0.754 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.117 0.883 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.717 -14.466 -16.204 22.037 hybrid contribution 0.119 0.801 1.266 1.503 sum -3.598 -13.665 -14.937 20.562 Atomic orbital electron populations 1.81295 1.13419 1.10078 1.09053 1.25911 0.92830 0.92454 0.92542 1.15867 0.83309 1.06224 0.98922 1.21713 0.95134 0.93858 0.95634 1.21485 0.92971 0.98550 0.99000 1.21796 1.02302 0.92247 0.90800 1.17537 0.91513 1.01670 0.93389 1.22266 0.91682 1.01128 0.94715 1.23192 0.95944 0.99497 0.96411 1.24059 0.86751 1.06230 0.97371 1.16194 0.85478 0.77514 0.80208 1.90790 1.31568 1.58629 1.62570 1.49668 1.14935 1.54001 1.16847 1.23460 0.92922 0.94115 0.90135 1.19855 0.90770 0.81977 0.89715 1.86021 1.64194 1.31558 1.58040 1.21679 1.17383 1.27765 0.91635 0.90084 1.25796 0.93709 0.94259 1.03291 1.69341 1.19143 1.29641 1.37813 0.85303 0.78196 0.77840 0.79073 1.18638 1.20915 1.20658 1.24244 0.93973 0.97703 0.88120 1.85053 1.11916 1.59099 1.40438 1.74022 1.14407 1.12965 1.04934 1.21135 0.93294 0.96079 0.96983 0.81723 0.79977 0.81937 0.76479 0.86591 0.91389 0.75430 0.91450 0.92205 0.88294 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.50 18.54 19.00 0.35 -11.15 16 2 C 0.28 5.35 15.32 88.33 1.35 6.70 16 3 C -0.04 -0.56 5.73 -21.39 -0.12 -0.68 16 4 C -0.04 -0.29 9.75 22.57 0.22 -0.07 16 5 C -0.10 -0.43 10.02 22.20 0.22 -0.21 16 6 C -0.05 -0.46 9.59 22.53 0.22 -0.24 16 7 C -0.04 -0.69 5.87 -20.07 -0.12 -0.80 16 8 C 0.06 1.41 7.04 42.99 0.30 1.71 16 9 C -0.13 -3.09 10.30 22.87 0.24 -2.85 16 10 C -0.08 -2.55 7.23 24.34 0.18 -2.38 16 11 C 0.62 23.48 8.07 86.69 0.70 24.17 16 12 O -0.55 -22.54 17.68 -3.99 -0.07 -22.61 16 13 N -0.62 -24.94 3.69 -861.73 -3.18 -28.12 16 14 C 0.12 4.61 8.02 83.18 0.67 5.28 16 15 C 0.22 10.04 1.59 -11.15 -0.02 10.03 16 16 O -0.59 -29.75 13.54 -148.98 -2.02 -31.77 16 17 C -0.55 -25.99 8.70 25.60 0.22 -25.77 16 18 H 0.08 3.66 7.81 -2.91 -0.02 3.64 16 19 C 0.03 1.43 5.40 84.65 0.46 1.89 16 20 N -0.92 -45.92 11.02 21.45 0.24 -45.68 16 21 Si 0.97 38.44 29.54 68.60 2.03 40.47 16 22 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 23 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 25 C 0.08 3.44 7.29 83.24 0.61 4.05 16 26 O 0.11 3.63 9.95 65.74 0.65 4.29 16 27 N -0.36 -11.17 11.78 -48.91 -0.58 -11.75 16 28 C -0.05 -0.95 9.40 22.75 0.21 -0.74 16 29 H 0.17 0.27 8.06 -2.91 -0.02 0.24 16 30 H 0.18 -0.57 8.06 -2.91 -0.02 -0.59 16 31 H 0.16 0.69 7.23 -2.91 -0.02 0.67 16 32 H 0.22 3.55 7.59 -2.91 -0.02 3.53 16 33 H 0.12 4.05 8.10 -2.39 -0.02 4.03 16 34 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.39 20.36 6.33 -74.05 -0.47 19.89 16 36 H 0.28 13.10 8.31 -92.70 -0.77 12.32 16 37 H 0.06 2.63 7.57 -2.39 -0.02 2.61 16 38 H 0.10 3.86 8.10 -2.39 -0.02 3.84 16 39 H 0.12 2.57 7.89 -2.91 -0.02 2.55 16 Total: -1.00 -64.42 359.56 3.43 -60.99 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.67 Total: 25.25 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: 5.34 Total: 20.08 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -3.17 Total: -96.70 kcal Atomic # 8 Polarization: -48.66 SS G_CDS: -1.43 Total: -50.09 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Total: -64.42 3.43 -60.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356581860.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.212 kcal (2) G-P(sol) polarization free energy of solvation -64.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds