Wall clock time and date at job start Tue Mar 31 2020 22:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34713 * 116.99867 * 2 1 4 4 O 1.21473 * 119.99732 * 0.02562 * 3 2 1 5 5 C 1.47724 * 120.00092 * 180.02562 * 3 2 1 6 6 C 1.39657 * 120.14846 * 353.12093 * 5 3 2 7 7 C 1.37920 * 119.84503 * 180.27128 * 6 5 3 8 8 C 1.38394 * 120.15195 * 359.70525 * 7 6 5 9 9 C 1.38350 * 120.29954 * 359.97438 * 8 7 6 10 10 C 1.37962 * 120.15444 * 0.02562 * 9 8 7 11 11 S 1.76192 * 120.07857 * 180.02562 * 10 9 8 12 12 O 1.42094 * 106.40330 * 128.82387 * 11 10 9 13 13 O 1.42101 * 106.40380 * 355.90495 * 11 10 9 14 14 N 1.65605 * 107.21890 * 242.36644 * 11 10 9 15 15 C 1.46492 * 119.99910 * 62.26004 * 14 11 10 16 16 C 1.53001 * 109.47351 * 164.20016 * 15 14 11 17 17 C 1.50697 * 115.54881 * 58.50302 * 16 15 14 18 18 H 1.07998 * 120.00142 * 270.08315 * 17 16 15 19 19 C 1.37883 * 120.00135 * 90.08598 * 17 16 15 20 20 N 1.31514 * 119.99472 * 3.16501 * 19 17 16 21 21 Si 1.86796 * 120.00169 * 183.16175 * 19 17 16 22 22 H 1.48505 * 109.47003 * 59.99962 * 21 19 17 23 23 H 1.48493 * 109.47085 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47072 * 300.00199 * 21 19 17 25 25 C 1.53002 * 117.49842 * 272.83796 * 16 15 14 26 26 C 1.53005 * 117.50160 * 204.17585 * 16 15 14 27 27 H 1.08995 * 109.46733 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46323 * 299.99016 * 1 2 3 29 29 H 1.08991 * 109.47504 * 59.99405 * 1 2 3 30 30 H 1.07994 * 120.07437 * 359.97438 * 6 5 3 31 31 H 1.08002 * 119.92713 * 179.71886 * 7 6 5 32 32 H 1.08003 * 119.84839 * 180.02562 * 8 7 6 33 33 H 1.08004 * 119.91950 * 180.02562 * 9 8 7 34 34 H 0.96997 * 119.99633 * 242.25997 * 14 11 10 35 35 H 1.09003 * 109.47306 * 284.19543 * 15 14 11 36 36 H 1.09004 * 109.47712 * 44.19665 * 15 14 11 37 37 H 0.96999 * 119.99473 * 185.01630 * 20 19 17 38 38 H 1.08997 * 117.49760 * 359.97438 * 25 16 15 39 39 H 1.09001 * 117.50311 * 145.01827 * 25 16 15 40 40 H 1.09001 * 117.49672 * 214.97621 * 26 16 15 41 41 H 1.08998 * 117.49881 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2777 -0.0006 6 6 4.3021 0.1171 0.1435 7 6 5.6790 0.1972 0.1478 8 6 6.3044 1.4233 0.0035 9 6 5.5543 2.5762 -0.1463 10 6 4.1763 2.5105 -0.1523 11 16 3.2230 3.9798 -0.3440 12 8 2.2980 3.7242 -1.3919 13 8 4.1482 5.0579 -0.3698 14 7 2.3265 4.1660 1.0360 15 6 2.9967 4.3525 2.3252 16 6 1.9926 4.8845 3.3497 17 6 0.7851 4.0151 3.5884 18 1 -0.1047 4.1510 2.9917 19 6 0.8163 3.0459 4.5687 20 7 1.8766 2.9216 5.3368 21 14 -0.6473 1.9098 4.8058 22 1 -0.8896 1.1470 3.5548 23 1 -0.3649 0.9637 5.9150 24 1 -1.8507 2.7150 5.1355 25 6 1.7981 6.4002 3.4271 26 6 2.5471 5.6663 4.5423 27 1 -0.3632 -1.0276 -0.0005 28 1 -0.3632 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8898 30 1 3.8153 -0.8403 0.2562 31 1 6.2705 -0.6989 0.2637 32 1 7.3829 1.4804 0.0071 33 1 6.0488 3.5298 -0.2589 34 1 1.3577 4.1515 0.9905 35 1 3.3952 3.3980 2.6690 36 1 3.8121 5.0668 2.2109 37 1 1.9290 2.1948 5.9770 38 1 2.3858 7.0183 2.7484 39 1 0.7969 6.7684 3.6511 40 1 2.0383 5.5520 5.4995 41 1 3.6273 5.8012 4.5973 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404123261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:17 Heat of formation + Delta-G solvation = -87.905440 kcal Electronic energy + Delta-G solvation = -28911.913370 eV Core-core repulsion = 24885.818744 eV Total energy + Delta-G solvation = -4026.094626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.58632 -38.83472 -37.00418 -36.89623 -36.04261 -35.30335 -33.09834 -31.88888 -31.76366 -31.42387 -27.68686 -25.88580 -24.82553 -24.29916 -23.21513 -21.17888 -21.00698 -19.38672 -18.98028 -18.22666 -17.38926 -16.74709 -16.66426 -16.28866 -16.08159 -15.56557 -15.19140 -14.74887 -14.68037 -14.49684 -14.06678 -13.72196 -13.47386 -13.31510 -12.81299 -12.62387 -12.53749 -12.30556 -12.01004 -11.91187 -11.82204 -11.57521 -11.44110 -11.19816 -11.01462 -10.92887 -10.72794 -10.64954 -10.48448 -10.36314 -10.11997 -9.55382 -9.41483 -9.23518 -9.05042 -8.57542 -8.30896 -8.06820 -6.05890 -4.12403 0.30970 0.88768 1.02264 2.53360 2.64699 3.24189 3.30241 3.32561 3.41037 3.64022 4.19284 4.36292 4.42707 4.66120 4.68758 4.93067 5.09169 5.21380 5.24033 5.33372 5.36491 5.37431 5.44480 5.62572 5.71407 5.84626 5.91818 5.96758 6.09289 6.35140 6.38578 6.41219 6.52124 6.55739 6.62509 6.84601 7.05996 7.18738 7.46983 7.66903 7.67731 7.84159 8.13651 8.41392 8.89020 9.52972 11.01795 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010182 B = 0.006150 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.371599 B = 4551.613262 C = 5594.242298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.351 6.351 3 C 0.491 3.509 4 O -0.460 6.460 5 C -0.021 4.021 6 C -0.084 4.084 7 C -0.084 4.084 8 C -0.110 4.110 9 C -0.033 4.033 10 C -0.621 4.621 11 S 2.700 3.300 12 O -0.955 6.955 13 O -0.975 6.975 14 N -1.075 6.075 15 C 0.160 3.840 16 C 0.031 3.969 17 C -0.486 4.486 18 H 0.060 0.940 19 C 0.072 3.928 20 N -0.878 5.878 21 Si 0.886 3.114 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.276 1.276 25 C -0.211 4.211 26 C -0.142 4.142 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.145 0.855 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.152 0.848 34 H 0.428 0.572 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.259 0.741 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.568 -7.621 -9.585 13.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.268 6.268 3 C 0.333 3.667 4 O -0.346 6.346 5 C -0.023 4.023 6 C -0.103 4.103 7 C -0.102 4.102 8 C -0.128 4.128 9 C -0.052 4.052 10 C -0.704 4.704 11 S 2.785 3.215 12 O -0.946 6.946 13 O -0.965 6.965 14 N -0.840 5.840 15 C 0.033 3.967 16 C 0.029 3.971 17 C -0.524 4.524 18 H 0.078 0.922 19 C -0.131 4.131 20 N -0.515 5.515 21 Si 0.713 3.287 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.202 1.202 25 C -0.249 4.249 26 C -0.180 4.180 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.163 0.837 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.169 0.831 34 H 0.268 0.732 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.586 -6.893 -10.091 13.882 hybrid contribution -0.984 -1.535 0.724 1.962 sum 5.602 -8.428 -9.367 13.790 Atomic orbital electron populations 1.23381 0.75236 1.03661 1.03598 1.86434 1.24154 1.31694 1.84483 1.21091 0.88786 0.82414 0.74363 1.90857 1.66348 1.34825 1.42601 1.18618 0.89319 0.93695 1.00686 1.21568 0.94158 0.98046 0.96522 1.21423 0.94376 0.98372 0.96034 1.21555 1.00728 0.92464 0.98090 1.21017 0.91238 1.00177 0.92811 1.31530 1.07947 1.18738 1.12205 1.01782 0.72900 0.73264 0.73603 1.93566 1.61125 1.85366 1.54493 1.93544 1.65493 1.50480 1.86992 1.55065 1.19672 1.87993 1.21289 1.20859 0.94075 0.99297 0.82437 1.18895 0.95931 0.88291 0.93953 1.20324 0.97771 1.17141 1.17188 0.92217 1.24951 0.95876 0.97410 0.94861 1.70000 1.28574 1.30675 1.22281 0.86777 0.83466 0.80868 0.77557 1.20355 1.21397 1.20178 1.23071 1.00539 0.97479 1.03775 1.22477 0.96646 1.04204 0.94682 0.88128 0.90893 0.91362 0.83739 0.84474 0.84440 0.83077 0.73229 0.92630 0.93403 0.93075 0.91482 0.90451 0.89330 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 101.05 1.07 1.52 16 2 O -0.35 -5.39 9.84 -40.53 -0.40 -5.79 16 3 C 0.49 8.75 7.71 34.61 0.27 9.02 16 4 O -0.46 -9.25 9.65 -27.40 -0.26 -9.52 16 5 C -0.02 -0.34 5.87 -104.98 -0.62 -0.96 16 6 C -0.08 -1.06 9.62 -39.17 -0.38 -1.44 16 7 C -0.08 -0.86 10.03 -39.64 -0.40 -1.25 16 8 C -0.11 -1.16 10.04 -39.48 -0.40 -1.56 16 9 C -0.03 -0.45 9.54 -39.64 -0.38 -0.83 16 10 C -0.62 -10.29 5.85 -39.17 -0.23 -10.52 16 11 S 2.70 51.70 4.89 -107.50 -0.53 51.18 16 12 O -0.96 -20.12 15.37 -67.16 -1.03 -21.15 16 13 O -0.98 -19.54 16.53 -57.17 -0.95 -20.49 16 14 N -1.07 -22.23 4.56 -10.61 -0.05 -22.28 16 15 C 0.16 3.49 6.05 -4.05 -0.02 3.47 16 16 C 0.03 0.75 1.70 -155.66 -0.26 0.49 16 17 C -0.49 -12.72 8.18 -34.44 -0.28 -13.00 16 18 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 19 C 0.07 1.90 5.41 -17.82 -0.10 1.80 16 20 N -0.88 -23.85 12.28 55.43 0.68 -23.17 16 21 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C -0.21 -4.65 9.94 -26.69 -0.27 -4.91 16 26 C -0.14 -3.29 8.97 -26.69 -0.24 -3.53 16 27 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.14 1.51 7.63 -52.49 -0.40 1.11 16 31 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.15 1.85 7.34 -52.48 -0.39 1.46 16 34 H 0.43 9.19 6.93 -34.47 -0.24 8.95 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.05 0.98 7.77 -51.93 -0.40 0.58 16 37 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 40 H 0.09 2.21 7.93 -51.93 -0.41 1.80 16 41 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -32.43 360.30 -9.55 -41.98 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -5.19 Total: 9.99 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -2.23 Total: -21.69 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.63 Total: -45.45 kcal Atomic # 8 Polarization: -54.30 SS G_CDS: -2.64 Total: -56.94 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 51.70 SS G_CDS: -0.53 Total: 51.18 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.43 -9.55 -41.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404123261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.922 kcal (2) G-P(sol) polarization free energy of solvation -32.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds