Wall clock time and date at job start Tue Mar 31 2020 22:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34713 * 116.99867 * 2 1 4 4 O 1.21473 * 119.99732 * 0.02562 * 3 2 1 5 5 C 1.47724 * 120.00092 * 180.02562 * 3 2 1 6 6 C 1.39657 * 120.14846 * 353.12093 * 5 3 2 7 7 C 1.37920 * 119.84503 * 180.27128 * 6 5 3 8 8 C 1.38394 * 120.15195 * 359.70525 * 7 6 5 9 9 C 1.38350 * 120.29954 * 359.97438 * 8 7 6 10 10 C 1.37962 * 120.15444 * 0.02562 * 9 8 7 11 11 S 1.76192 * 120.07857 * 180.02562 * 10 9 8 12 12 O 1.42094 * 106.40330 * 128.82387 * 11 10 9 13 13 O 1.42101 * 106.40380 * 355.90495 * 11 10 9 14 14 N 1.65605 * 107.21890 * 242.36644 * 11 10 9 15 15 C 1.46492 * 119.99910 * 62.26004 * 14 11 10 16 16 C 1.53001 * 109.47351 * 164.20016 * 15 14 11 17 17 C 1.50697 * 115.54881 * 58.50302 * 16 15 14 18 18 H 1.07998 * 120.00142 * 270.08315 * 17 16 15 19 19 C 1.37883 * 120.00135 * 90.08598 * 17 16 15 20 20 N 1.31514 * 119.99472 * 3.16501 * 19 17 16 21 21 Si 1.86796 * 120.00169 * 183.16175 * 19 17 16 22 22 H 1.48505 * 109.47003 * 59.99962 * 21 19 17 23 23 H 1.48493 * 109.47085 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47072 * 300.00199 * 21 19 17 25 25 C 1.53002 * 117.49842 * 272.83796 * 16 15 14 26 26 C 1.53005 * 117.50160 * 204.17585 * 16 15 14 27 27 H 1.08995 * 109.46733 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46323 * 299.99016 * 1 2 3 29 29 H 1.08991 * 109.47504 * 59.99405 * 1 2 3 30 30 H 1.07994 * 120.07437 * 359.97438 * 6 5 3 31 31 H 1.08002 * 119.92713 * 179.71886 * 7 6 5 32 32 H 1.08003 * 119.84839 * 180.02562 * 8 7 6 33 33 H 1.08004 * 119.91950 * 180.02562 * 9 8 7 34 34 H 0.96997 * 119.99633 * 242.25997 * 14 11 10 35 35 H 1.09003 * 109.47306 * 284.19543 * 15 14 11 36 36 H 1.09004 * 109.47712 * 44.19665 * 15 14 11 37 37 H 0.96999 * 119.99473 * 185.01630 * 20 19 17 38 38 H 1.08997 * 117.49760 * 359.97438 * 25 16 15 39 39 H 1.09001 * 117.50311 * 145.01827 * 25 16 15 40 40 H 1.09001 * 117.49672 * 214.97621 * 26 16 15 41 41 H 1.08998 * 117.49881 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2777 -0.0006 6 6 4.3021 0.1171 0.1435 7 6 5.6790 0.1972 0.1478 8 6 6.3044 1.4233 0.0035 9 6 5.5543 2.5762 -0.1463 10 6 4.1763 2.5105 -0.1523 11 16 3.2230 3.9798 -0.3440 12 8 2.2980 3.7242 -1.3919 13 8 4.1482 5.0579 -0.3698 14 7 2.3265 4.1660 1.0360 15 6 2.9967 4.3525 2.3252 16 6 1.9926 4.8845 3.3497 17 6 0.7851 4.0151 3.5884 18 1 -0.1047 4.1510 2.9917 19 6 0.8163 3.0459 4.5687 20 7 1.8766 2.9216 5.3368 21 14 -0.6473 1.9098 4.8058 22 1 -0.8896 1.1470 3.5548 23 1 -0.3649 0.9637 5.9150 24 1 -1.8507 2.7150 5.1355 25 6 1.7981 6.4002 3.4271 26 6 2.5471 5.6663 4.5423 27 1 -0.3632 -1.0276 -0.0005 28 1 -0.3632 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8898 30 1 3.8153 -0.8403 0.2562 31 1 6.2705 -0.6989 0.2637 32 1 7.3829 1.4804 0.0071 33 1 6.0488 3.5298 -0.2589 34 1 1.3577 4.1515 0.9905 35 1 3.3952 3.3980 2.6690 36 1 3.8121 5.0668 2.2109 37 1 1.9290 2.1948 5.9770 38 1 2.3858 7.0183 2.7484 39 1 0.7969 6.7684 3.6511 40 1 2.0383 5.5520 5.4995 41 1 3.6273 5.8012 4.5973 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404123261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:17 Heat of formation + Delta-G solvation = -108.727700 kcal Electronic energy + Delta-G solvation = -28912.816291 eV Core-core repulsion = 24885.818744 eV Total energy + Delta-G solvation = -4026.997547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.80461 -39.86437 -38.79199 -38.35333 -37.43026 -36.85960 -34.78734 -33.87906 -32.78883 -32.42553 -28.76233 -27.81355 -26.63305 -25.38166 -24.23120 -22.84213 -22.36804 -21.22528 -20.35068 -19.49143 -18.68669 -18.33397 -18.09902 -17.64355 -17.51964 -17.04055 -16.65241 -16.17833 -15.98946 -15.74250 -15.51554 -15.29915 -14.68158 -14.55156 -14.48885 -14.10588 -13.84491 -13.69052 -13.50571 -13.15195 -13.10452 -13.02206 -12.96743 -12.94418 -12.81150 -12.70391 -12.36562 -11.98812 -11.92765 -11.85638 -11.65311 -11.27066 -10.97128 -10.54614 -10.43309 -10.23368 -10.10322 -9.89786 -8.07888 -6.18582 -0.80353 -0.44503 -0.04420 1.36509 1.38103 1.40080 1.46599 1.50173 2.07518 2.42384 2.45302 2.77992 3.18409 3.30574 3.53530 3.58819 3.78555 3.94316 4.18945 4.22336 4.23865 4.26762 4.29197 4.39077 4.57249 4.60869 4.63403 4.72419 4.74002 4.81336 4.88596 5.05623 5.05772 5.16035 5.20682 5.29021 5.34663 5.66057 5.68142 5.78201 5.80288 6.26958 6.43109 6.57671 6.85579 7.48281 8.98974 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010182 B = 0.006150 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.371599 B = 4551.613262 C = 5594.242298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.346 6.346 3 C 0.480 3.520 4 O -0.496 6.496 5 C -0.055 4.055 6 C -0.082 4.082 7 C -0.068 4.068 8 C -0.096 4.096 9 C -0.045 4.045 10 C -0.642 4.642 11 S 2.709 3.291 12 O -0.983 6.983 13 O -0.992 6.992 14 N -1.082 6.082 15 C 0.172 3.828 16 C 0.007 3.993 17 C -0.497 4.497 18 H 0.048 0.952 19 C 0.032 3.968 20 N -0.900 5.900 21 Si 0.936 3.064 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.276 1.276 25 C -0.195 4.195 26 C -0.142 4.142 27 H 0.143 0.857 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.165 0.835 31 H 0.187 0.813 32 H 0.183 0.817 33 H 0.159 0.841 34 H 0.422 0.578 35 H 0.040 0.960 36 H 0.060 0.940 37 H 0.259 0.741 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.638 -9.765 -9.940 16.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.262 6.262 3 C 0.325 3.675 4 O -0.385 6.385 5 C -0.057 4.057 6 C -0.101 4.101 7 C -0.085 4.085 8 C -0.114 4.114 9 C -0.064 4.064 10 C -0.730 4.730 11 S 2.800 3.200 12 O -0.973 6.973 13 O -0.983 6.983 14 N -0.844 5.844 15 C 0.046 3.954 16 C 0.005 3.995 17 C -0.535 4.535 18 H 0.066 0.934 19 C -0.169 4.169 20 N -0.538 5.538 21 Si 0.762 3.238 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.202 1.202 25 C -0.233 4.233 26 C -0.180 4.180 27 H 0.161 0.839 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.182 0.818 31 H 0.204 0.796 32 H 0.200 0.800 33 H 0.177 0.823 34 H 0.259 0.741 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.627 -9.000 -10.453 16.269 hybrid contribution -1.546 -0.961 0.801 1.989 sum 7.082 -9.961 -9.652 15.573 Atomic orbital electron populations 1.23628 0.74208 1.06080 1.02513 1.86434 1.25189 1.30594 1.83995 1.21679 0.89876 0.82514 0.73479 1.90828 1.67242 1.35900 1.44546 1.18742 0.88599 0.94967 1.03381 1.21945 0.95397 0.97489 0.95279 1.22034 0.93488 1.00074 0.92919 1.22105 1.02785 0.91240 0.95269 1.21345 0.90170 1.02142 0.92763 1.30953 1.08966 1.17179 1.15869 1.01080 0.72513 0.73747 0.72700 1.93520 1.62465 1.86054 1.55291 1.93507 1.65418 1.52285 1.87057 1.55044 1.19383 1.88790 1.21168 1.20610 0.93768 0.98593 0.82455 1.19039 0.96121 0.89242 0.95095 1.20500 0.98252 1.17798 1.16971 0.93374 1.25524 0.98002 0.98609 0.94742 1.70088 1.29910 1.31093 1.22696 0.85971 0.80797 0.79372 0.77655 1.19706 1.20932 1.20190 1.23067 1.00583 0.96512 1.03096 1.22381 0.97387 1.04601 0.93640 0.83903 0.93207 0.91273 0.81767 0.79618 0.79956 0.82332 0.74084 0.94165 0.92171 0.93189 0.89544 0.90613 0.91589 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.56 113.37 1.20 1.94 16 2 O -0.35 -10.52 9.84 -56.23 -0.55 -11.07 16 3 C 0.48 17.46 7.71 70.33 0.54 18.00 16 4 O -0.50 -20.92 9.65 27.72 0.27 -20.65 16 5 C -0.05 -1.74 5.87 -20.10 -0.12 -1.86 16 6 C -0.08 -1.84 9.62 22.54 0.22 -1.62 16 7 C -0.07 -1.04 10.03 22.23 0.22 -0.82 16 8 C -0.10 -1.58 10.04 22.33 0.22 -1.36 16 9 C -0.04 -1.13 9.54 22.23 0.21 -0.92 16 10 C -0.64 -21.09 5.85 22.54 0.13 -20.95 16 11 S 2.71 106.88 4.89 -56.49 -0.28 106.60 16 12 O -0.98 -43.31 15.37 -118.45 -1.82 -45.13 16 13 O -0.99 -40.38 16.53 -128.00 -2.12 -42.49 16 14 N -1.08 -46.36 4.56 -187.50 -0.86 -47.22 16 15 C 0.17 7.68 6.05 86.38 0.52 8.21 16 16 C 0.01 0.34 1.70 -52.93 -0.09 0.25 16 17 C -0.50 -26.64 8.18 25.60 0.21 -26.43 16 18 H 0.05 2.62 7.82 -2.91 -0.02 2.60 16 19 C 0.03 1.70 5.41 84.66 0.46 2.16 16 20 N -0.90 -49.46 12.28 21.45 0.26 -49.19 16 21 Si 0.94 42.57 29.54 68.60 2.03 44.60 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 C -0.20 -8.58 9.94 30.62 0.30 -8.28 16 26 C -0.14 -6.61 8.97 30.62 0.27 -6.34 16 27 H 0.14 2.38 8.14 -2.39 -0.02 2.37 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.16 2.90 7.63 -2.91 -0.02 2.88 16 31 H 0.19 1.11 8.06 -2.91 -0.02 1.09 16 32 H 0.18 1.41 8.06 -2.91 -0.02 1.38 16 33 H 0.16 3.62 7.34 -2.91 -0.02 3.60 16 34 H 0.42 19.12 6.93 -96.75 -0.67 18.45 16 35 H 0.04 1.88 8.14 -2.39 -0.02 1.87 16 36 H 0.06 2.48 7.77 -2.38 -0.02 2.46 16 37 H 0.26 13.69 8.32 -92.71 -0.77 12.92 16 38 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 39 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 40 H 0.07 3.36 7.93 -2.39 -0.02 3.34 16 41 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -72.99 360.30 1.64 -71.35 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.39 Total: 31.22 kcal Atomic # 6 Polarization: -42.32 SS G_CDS: 4.31 Total: -38.01 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -0.59 Total: -96.41 kcal Atomic # 8 Polarization: -115.12 SS G_CDS: -4.22 Total: -119.35 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: 106.88 SS G_CDS: -0.28 Total: 106.60 kcal Total: -72.99 1.64 -71.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404123261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.378 kcal (2) G-P(sol) polarization free energy of solvation -72.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds