Wall clock time and date at job start Tue Mar 31 2020 22:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34226 * 117.00554 * 2 1 4 4 O 1.20836 * 119.99461 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00589 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47097 * 179.97438 * 5 3 2 7 7 C 1.36936 * 120.00032 * 277.70620 * 6 5 3 8 8 H 1.08001 * 119.99616 * 138.34008 * 7 6 5 9 9 C 1.38806 * 120.00327 * 318.33723 * 7 6 5 10 10 N 1.31622 * 120.00085 * 340.94846 * 9 7 6 11 11 Si 1.86801 * 120.00013 * 160.94373 * 9 7 6 12 12 H 1.48489 * 109.47273 * 60.00346 * 11 9 7 13 13 H 1.48506 * 109.46963 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47184 * 299.99906 * 11 9 7 15 15 S 1.65602 * 119.99966 * 97.71165 * 6 5 3 16 16 O 1.42093 * 104.27948 * 153.92351 * 15 6 5 17 17 O 1.42101 * 104.27427 * 26.06667 * 15 6 5 18 18 C 1.81403 * 104.44918 * 270.00039 * 15 6 5 19 19 H 1.08995 * 115.56105 * 39.30094 * 18 15 6 20 20 C 1.53001 * 117.49414 * 253.62388 * 18 15 6 21 21 C 1.52994 * 117.49874 * 185.00314 * 18 15 6 22 22 H 1.09001 * 117.49931 * 359.96634 * 21 18 15 23 23 C 1.50707 * 117.49346 * 214.97806 * 21 18 15 24 24 C 1.38238 * 119.99658 * 299.71767 * 23 21 18 25 25 C 1.38240 * 119.99540 * 179.79211 * 24 23 21 26 26 C 1.38239 * 119.99905 * 0.44495 * 25 24 23 27 27 C 1.38231 * 119.99942 * 359.81147 * 26 25 24 28 28 C 1.38230 * 120.00502 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47218 * 59.99516 * 1 2 3 30 30 H 1.09000 * 109.47545 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46995 * 300.00046 * 1 2 3 32 32 H 1.09008 * 109.46922 * 59.99918 * 5 3 2 33 33 H 1.08998 * 109.47185 * 300.00105 * 5 3 2 34 34 H 0.97005 * 120.00135 * 179.97438 * 10 9 7 35 35 H 1.09002 * 117.50239 * 359.97438 * 20 18 15 36 36 H 1.09003 * 117.49673 * 145.02079 * 20 18 15 37 37 H 1.07999 * 120.00084 * 0.02562 * 24 23 21 38 38 H 1.07998 * 119.99415 * 180.27789 * 25 24 23 39 39 H 1.07996 * 119.99393 * 179.83220 * 26 25 24 40 40 H 1.08006 * 119.99609 * 180.02562 * 27 26 25 41 41 H 1.08002 * 120.00595 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6796 -0.0011 7 6 4.0229 3.3810 -1.1765 8 1 3.6650 4.3994 -1.2103 9 6 4.5247 2.7832 -2.3243 10 7 5.2909 1.7171 -2.2299 11 14 4.1124 3.4915 -4.0029 12 1 4.6027 4.8908 -4.0837 13 1 4.7655 2.6760 -5.0583 14 1 2.6409 3.4703 -4.2013 15 16 4.4015 3.4194 1.4198 16 8 5.2895 4.4565 1.0259 17 8 4.8415 2.3552 2.2523 18 6 2.8471 4.1152 2.0444 19 1 1.9641 3.4908 1.9084 20 6 2.6621 5.6309 1.9471 21 6 2.9156 4.9768 3.3068 22 1 3.8946 5.1251 3.7624 23 6 1.7570 4.8969 4.2674 24 6 0.4864 5.2441 3.8480 25 6 -0.5770 5.1667 4.7279 26 6 -0.3682 4.7510 6.0296 27 6 0.9033 4.4089 6.4503 28 6 1.9660 4.4820 5.5693 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.9557 0.7808 -0.8909 33 1 3.9564 0.7805 0.8891 34 1 5.6413 1.2991 -3.0321 35 1 3.4747 6.2100 1.5083 36 1 1.6575 6.0036 1.7474 37 1 0.3239 5.5722 2.8320 38 1 -1.5705 5.4337 4.3990 39 1 -1.1986 4.6931 6.7177 40 1 1.0664 4.0836 7.4673 41 1 2.9595 4.2151 5.8981 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416403760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:28 Heat of formation + Delta-G solvation = -86.697040 kcal Electronic energy + Delta-G solvation = -28052.056622 eV Core-core repulsion = 24026.014396 eV Total energy + Delta-G solvation = -4026.042226 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -39.69989 -39.61087 -36.77925 -36.25682 -36.02604 -35.08000 -34.82163 -31.48446 -31.01673 -30.54423 -28.45845 -26.37601 -24.16870 -23.88092 -23.09534 -22.25983 -20.59834 -20.33903 -18.50360 -17.68161 -17.15560 -16.97496 -16.62459 -16.25368 -15.72984 -15.39960 -15.21549 -14.85495 -14.82787 -14.50343 -14.14288 -13.45652 -13.36019 -13.03782 -13.02403 -12.94942 -12.83569 -11.99866 -11.87755 -11.61401 -11.44334 -11.42072 -11.23598 -11.15037 -11.09785 -10.99364 -10.84103 -10.83379 -10.59822 -10.52147 -10.28229 -10.25169 -10.06387 -9.76003 -9.08270 -8.97428 -8.59778 -7.83117 -6.33534 -4.08590 1.15153 1.31558 1.35119 2.97430 3.16203 3.25981 3.26803 3.31858 3.39779 3.88725 3.98888 4.32415 4.54426 4.72284 4.77013 4.84751 4.86602 4.95118 5.05570 5.07995 5.22010 5.39774 5.41563 5.45925 5.54212 5.55759 5.58256 5.81882 5.84692 5.88642 6.00789 6.05800 6.07266 6.22033 6.41630 6.44526 6.60200 6.66318 6.92390 6.93758 7.16491 7.57259 8.28464 8.54531 8.90790 9.30765 10.71667 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012889 B = 0.004371 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.860354 B = 6404.923240 C = 7227.705319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.368 6.368 3 C 0.436 3.564 4 O -0.503 6.503 5 C 0.125 3.875 6 N -0.820 5.820 7 C -0.286 4.286 8 H 0.090 0.910 9 C 0.042 3.958 10 N -0.863 5.863 11 Si 0.917 3.083 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.274 1.274 15 S 2.600 3.400 16 O -0.949 6.949 17 O -0.987 6.987 18 C -0.655 4.655 19 H 0.159 0.841 20 C -0.111 4.111 21 C -0.084 4.084 22 H 0.119 0.881 23 C -0.045 4.045 24 C -0.114 4.114 25 C -0.119 4.119 26 C -0.127 4.127 27 C -0.119 4.119 28 C -0.113 4.113 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.147 0.853 33 H 0.108 0.892 34 H 0.270 0.730 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.368 1.915 10.200 14.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.285 6.285 3 C 0.277 3.723 4 O -0.389 6.389 5 C -0.005 4.005 6 N -0.649 5.649 7 C -0.420 4.420 8 H 0.107 0.893 9 C -0.165 4.165 10 N -0.502 5.502 11 Si 0.743 3.257 12 H -0.195 1.195 13 H -0.208 1.208 14 H -0.200 1.200 15 S 2.696 3.304 16 O -0.939 6.939 17 O -0.976 6.976 18 C -0.759 4.759 19 H 0.176 0.824 20 C -0.149 4.149 21 C -0.104 4.104 22 H 0.137 0.863 23 C -0.046 4.046 24 C -0.132 4.132 25 C -0.137 4.137 26 C -0.145 4.145 27 C -0.137 4.137 28 C -0.131 4.131 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.164 0.836 33 H 0.126 0.874 34 H 0.081 0.919 35 H 0.138 0.862 36 H 0.126 0.874 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.630 2.169 10.568 14.461 hybrid contribution -1.370 0.217 -1.026 1.725 sum -11.000 2.386 9.542 14.756 Atomic orbital electron populations 1.23090 0.78320 1.02630 1.01900 1.86583 1.22051 1.35083 1.84772 1.25803 0.93966 0.80888 0.71622 1.90546 1.67021 1.36227 1.45141 1.21036 0.83848 0.87636 1.07992 1.52253 1.76910 1.16277 1.19465 1.18924 1.39028 0.98879 0.85177 0.89263 1.25444 0.93895 0.97016 1.00167 1.69905 1.28705 1.21585 1.29998 0.86164 0.78777 0.79355 0.81416 1.19455 1.20850 1.19999 1.05885 0.75369 0.74791 0.74329 1.93492 1.59275 1.60237 1.80903 1.93454 1.79428 1.53997 1.70766 1.33140 1.27431 1.05188 1.10165 0.82357 1.22852 1.04840 0.90372 0.96802 1.20822 0.98522 1.03149 0.87886 0.86331 1.19112 0.93326 0.98539 0.93595 1.21137 0.92167 0.99848 1.00076 1.21122 0.98730 1.00048 0.93806 1.21132 0.97060 1.00188 0.96158 1.21111 0.92833 1.00229 0.99564 1.21050 0.99563 0.99498 0.92966 0.92410 0.88987 0.92672 0.83576 0.87447 0.91937 0.86214 0.87391 0.85633 0.86098 0.86249 0.85987 0.85699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.56 16 2 O -0.37 -6.67 10.56 -39.25 -0.41 -7.09 16 3 C 0.44 9.10 7.97 36.00 0.29 9.39 16 4 O -0.50 -11.06 14.50 -18.76 -0.27 -11.33 16 5 C 0.12 2.80 5.90 -5.20 -0.03 2.77 16 6 N -0.82 -19.90 2.28 -61.09 -0.14 -20.04 16 7 C -0.29 -7.39 8.47 -15.06 -0.13 -7.52 16 8 H 0.09 2.26 7.90 -52.49 -0.41 1.84 16 9 C 0.04 1.08 5.05 -17.43 -0.09 0.99 16 10 N -0.86 -22.72 11.52 55.49 0.64 -22.08 16 11 Si 0.92 20.18 29.59 -169.99 -5.03 15.15 16 12 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 15 S 2.60 58.53 5.75 -107.50 -0.62 57.91 16 16 O -0.95 -23.60 16.53 -57.54 -0.95 -24.56 16 17 O -0.99 -23.54 16.51 -57.54 -0.95 -24.49 16 18 C -0.65 -12.00 6.19 -26.73 -0.17 -12.16 16 19 H 0.16 2.99 6.64 -51.93 -0.35 2.65 16 20 C -0.11 -1.74 9.49 -26.73 -0.25 -1.99 16 21 C -0.08 -1.30 5.81 -91.77 -0.53 -1.84 16 22 H 0.12 1.69 8.14 -51.93 -0.42 1.26 16 23 C -0.05 -0.65 5.61 -104.62 -0.59 -1.23 16 24 C -0.11 -1.52 9.30 -39.58 -0.37 -1.88 16 25 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 26 C -0.13 -1.36 10.05 -39.58 -0.40 -1.75 16 27 C -0.12 -1.32 10.05 -39.59 -0.40 -1.72 16 28 C -0.11 -1.45 9.74 -39.58 -0.39 -1.83 16 29 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.15 3.47 5.69 -51.92 -0.30 3.18 16 33 H 0.11 2.26 6.78 -51.93 -0.35 1.91 16 34 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 35 H 0.12 1.86 7.68 -51.93 -0.40 1.46 16 36 H 0.11 1.47 6.17 -51.93 -0.32 1.15 16 37 H 0.13 1.58 6.02 -52.49 -0.32 1.27 16 38 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 40 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 41 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 362.78 15.07 5.47 5.47 Total: -1.00 -32.09 362.78 -9.61 -41.69 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -4.96 Total: 8.35 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -2.38 Total: -19.00 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.50 Total: -42.12 kcal Atomic # 8 Polarization: -64.87 SS G_CDS: -2.59 Total: -67.46 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.15 kcal Atomic # 16 Polarization: 58.53 SS G_CDS: -0.62 Total: 57.91 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.09 -9.61 -41.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416403760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.003 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds