Wall clock time and date at job start Tue Mar 31 2020 22:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34226 * 117.00554 * 2 1 4 4 O 1.20836 * 119.99461 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00589 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47097 * 179.97438 * 5 3 2 7 7 C 1.36936 * 120.00032 * 277.70620 * 6 5 3 8 8 H 1.08001 * 119.99616 * 138.34008 * 7 6 5 9 9 C 1.38806 * 120.00327 * 318.33723 * 7 6 5 10 10 N 1.31622 * 120.00085 * 340.94846 * 9 7 6 11 11 Si 1.86801 * 120.00013 * 160.94373 * 9 7 6 12 12 H 1.48489 * 109.47273 * 60.00346 * 11 9 7 13 13 H 1.48506 * 109.46963 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47184 * 299.99906 * 11 9 7 15 15 S 1.65602 * 119.99966 * 97.71165 * 6 5 3 16 16 O 1.42093 * 104.27948 * 153.92351 * 15 6 5 17 17 O 1.42101 * 104.27427 * 26.06667 * 15 6 5 18 18 C 1.81403 * 104.44918 * 270.00039 * 15 6 5 19 19 H 1.08995 * 115.56105 * 39.30094 * 18 15 6 20 20 C 1.53001 * 117.49414 * 253.62388 * 18 15 6 21 21 C 1.52994 * 117.49874 * 185.00314 * 18 15 6 22 22 H 1.09001 * 117.49931 * 359.96634 * 21 18 15 23 23 C 1.50707 * 117.49346 * 214.97806 * 21 18 15 24 24 C 1.38238 * 119.99658 * 299.71767 * 23 21 18 25 25 C 1.38240 * 119.99540 * 179.79211 * 24 23 21 26 26 C 1.38239 * 119.99905 * 0.44495 * 25 24 23 27 27 C 1.38231 * 119.99942 * 359.81147 * 26 25 24 28 28 C 1.38230 * 120.00502 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47218 * 59.99516 * 1 2 3 30 30 H 1.09000 * 109.47545 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46995 * 300.00046 * 1 2 3 32 32 H 1.09008 * 109.46922 * 59.99918 * 5 3 2 33 33 H 1.08998 * 109.47185 * 300.00105 * 5 3 2 34 34 H 0.97005 * 120.00135 * 179.97438 * 10 9 7 35 35 H 1.09002 * 117.50239 * 359.97438 * 20 18 15 36 36 H 1.09003 * 117.49673 * 145.02079 * 20 18 15 37 37 H 1.07999 * 120.00084 * 0.02562 * 24 23 21 38 38 H 1.07998 * 119.99415 * 180.27789 * 25 24 23 39 39 H 1.07996 * 119.99393 * 179.83220 * 26 25 24 40 40 H 1.08006 * 119.99609 * 180.02562 * 27 26 25 41 41 H 1.08002 * 120.00595 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6796 -0.0011 7 6 4.0229 3.3810 -1.1765 8 1 3.6650 4.3994 -1.2103 9 6 4.5247 2.7832 -2.3243 10 7 5.2909 1.7171 -2.2299 11 14 4.1124 3.4915 -4.0029 12 1 4.6027 4.8908 -4.0837 13 1 4.7655 2.6760 -5.0583 14 1 2.6409 3.4703 -4.2013 15 16 4.4015 3.4194 1.4198 16 8 5.2895 4.4565 1.0259 17 8 4.8415 2.3552 2.2523 18 6 2.8471 4.1152 2.0444 19 1 1.9641 3.4908 1.9084 20 6 2.6621 5.6309 1.9471 21 6 2.9156 4.9768 3.3068 22 1 3.8946 5.1251 3.7624 23 6 1.7570 4.8969 4.2674 24 6 0.4864 5.2441 3.8480 25 6 -0.5770 5.1667 4.7279 26 6 -0.3682 4.7510 6.0296 27 6 0.9033 4.4089 6.4503 28 6 1.9660 4.4820 5.5693 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.9557 0.7808 -0.8909 33 1 3.9564 0.7805 0.8891 34 1 5.6413 1.2991 -3.0321 35 1 3.4747 6.2100 1.5083 36 1 1.6575 6.0036 1.7474 37 1 0.3239 5.5722 2.8320 38 1 -1.5705 5.4337 4.3990 39 1 -1.1986 4.6931 6.7177 40 1 1.0664 4.0836 7.4673 41 1 2.9595 4.2151 5.8981 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416403760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:26 Heat of formation + Delta-G solvation = -105.885930 kcal Electronic energy + Delta-G solvation = -28052.888715 eV Core-core repulsion = 24026.014396 eV Total energy + Delta-G solvation = -4026.874319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -41.28365 -40.61631 -38.15684 -37.87598 -37.71943 -36.87288 -36.63746 -33.39515 -31.91064 -31.50484 -30.03380 -27.85205 -25.92860 -25.03036 -24.43225 -23.27895 -22.16417 -21.43848 -20.33506 -19.31853 -18.65810 -18.56079 -18.08399 -17.71373 -17.24754 -16.99665 -16.68789 -16.34795 -16.11769 -15.83272 -15.31926 -15.11820 -14.49989 -14.46625 -14.38066 -14.18250 -13.90151 -13.61883 -13.30409 -13.20398 -13.07790 -12.95025 -12.86491 -12.86050 -12.62516 -12.53038 -12.42891 -12.19417 -12.03740 -11.91989 -11.81250 -11.67249 -11.58963 -11.38726 -10.91449 -9.86526 -9.77607 -9.54230 -8.25162 -6.06116 -0.51058 0.29924 0.45952 1.31809 1.45174 1.47990 1.55344 1.69979 2.08331 2.31166 2.53524 2.87349 2.91891 3.15257 3.36140 3.50700 3.62024 3.78580 3.90487 4.08196 4.11389 4.14689 4.25807 4.27987 4.35331 4.37203 4.52692 4.58788 4.64776 4.69044 4.81304 4.85744 4.87487 5.05942 5.12915 5.23820 5.44949 5.53303 5.57958 5.64147 5.66503 6.06794 6.36957 6.91910 6.98692 7.37209 8.80229 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012889 B = 0.004371 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.860354 B = 6404.923240 C = 7227.705319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.370 6.370 3 C 0.443 3.557 4 O -0.516 6.516 5 C 0.120 3.880 6 N -0.836 5.836 7 C -0.306 4.306 8 H 0.086 0.914 9 C 0.000 4.000 10 N -0.893 5.893 11 Si 0.973 3.027 12 H -0.266 1.266 13 H -0.277 1.277 14 H -0.272 1.272 15 S 2.603 3.397 16 O -0.982 6.982 17 O -1.009 7.009 18 C -0.656 4.656 19 H 0.156 0.844 20 C -0.105 4.105 21 C -0.068 4.068 22 H 0.127 0.873 23 C -0.071 4.071 24 C -0.128 4.128 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.122 4.122 28 C -0.127 4.127 29 H 0.056 0.944 30 H 0.133 0.867 31 H 0.061 0.939 32 H 0.132 0.868 33 H 0.112 0.888 34 H 0.273 0.727 35 H 0.119 0.881 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.144 0.856 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.001 2.332 11.472 17.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C 0.284 3.716 4 O -0.404 6.404 5 C -0.010 4.010 6 N -0.664 5.664 7 C -0.439 4.439 8 H 0.104 0.896 9 C -0.204 4.204 10 N -0.532 5.532 11 Si 0.796 3.204 12 H -0.191 1.191 13 H -0.202 1.202 14 H -0.197 1.197 15 S 2.704 3.296 16 O -0.972 6.972 17 O -0.999 6.999 18 C -0.766 4.766 19 H 0.174 0.826 20 C -0.142 4.142 21 C -0.088 4.088 22 H 0.145 0.855 23 C -0.072 4.072 24 C -0.146 4.146 25 C -0.142 4.142 26 C -0.141 4.141 27 C -0.139 4.139 28 C -0.145 4.145 29 H 0.075 0.925 30 H 0.151 0.849 31 H 0.079 0.921 32 H 0.149 0.851 33 H 0.130 0.870 34 H 0.082 0.918 35 H 0.137 0.863 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.166 0.834 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.226 2.538 11.801 17.181 hybrid contribution -0.701 0.064 -1.230 1.417 sum -12.927 2.601 10.571 16.900 Atomic orbital electron populations 1.23501 0.75441 1.05483 1.02170 1.86533 1.24719 1.33238 1.84147 1.25223 0.93334 0.81484 0.71532 1.90526 1.67187 1.36837 1.45893 1.20922 0.85531 0.87012 1.07506 1.52298 1.77729 1.16768 1.19635 1.19083 1.39533 0.99048 0.86249 0.89609 1.26181 0.93713 0.97457 1.03078 1.69993 1.29676 1.22762 1.30786 0.85310 0.78502 0.78797 0.77744 1.19119 1.20187 1.19730 1.05262 0.76455 0.74125 0.73734 1.93446 1.61741 1.60632 1.81424 1.93414 1.80885 1.54932 1.70701 1.32564 1.23652 1.06660 1.13721 0.82625 1.23080 1.06204 0.87984 0.96945 1.21032 0.99926 1.00154 0.87679 0.85534 1.19123 0.93172 1.00909 0.93992 1.21283 0.92371 1.00300 1.00646 1.21450 0.99263 0.99504 0.93980 1.21557 0.97823 0.98384 0.96299 1.21468 0.92534 0.99427 1.00505 1.21288 1.00733 0.99628 0.92874 0.92523 0.84895 0.92064 0.85087 0.86979 0.91788 0.86311 0.85045 0.85572 0.83840 0.83215 0.83373 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.56 113.37 1.20 1.90 16 2 O -0.37 -13.11 10.56 -51.38 -0.54 -13.65 16 3 C 0.44 18.60 7.97 71.23 0.57 19.17 16 4 O -0.52 -22.71 14.50 21.93 0.32 -22.39 16 5 C 0.12 5.56 5.90 85.63 0.51 6.06 16 6 N -0.84 -41.82 2.28 -347.19 -0.79 -42.61 16 7 C -0.31 -16.24 8.47 84.03 0.71 -15.53 16 8 H 0.09 4.47 7.90 -2.91 -0.02 4.45 16 9 C 0.00 -0.01 5.05 84.86 0.43 0.42 16 10 N -0.89 -48.32 11.52 21.65 0.25 -48.07 16 11 Si 0.97 41.79 29.59 68.60 2.03 43.82 16 12 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 13 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 14 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 15 S 2.60 120.77 5.75 -56.49 -0.32 120.44 16 16 O -0.98 -50.54 16.53 -127.65 -2.11 -52.65 16 17 O -1.01 -49.70 16.51 -127.65 -2.11 -51.81 16 18 C -0.66 -24.10 6.19 30.59 0.19 -23.91 16 19 H 0.16 5.90 6.64 -2.39 -0.02 5.88 16 20 C -0.10 -3.20 9.49 30.59 0.29 -2.91 16 21 C -0.07 -2.06 5.81 -11.54 -0.07 -2.13 16 22 H 0.13 3.56 8.14 -2.39 -0.02 3.54 16 23 C -0.07 -1.94 5.61 -19.86 -0.11 -2.05 16 24 C -0.13 -3.14 9.30 22.27 0.21 -2.94 16 25 C -0.12 -2.47 10.05 22.27 0.22 -2.24 16 26 C -0.12 -2.16 10.05 22.27 0.22 -1.94 16 27 C -0.12 -2.32 10.05 22.27 0.22 -2.10 16 28 C -0.13 -3.04 9.74 22.27 0.22 -2.82 16 29 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 30 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.06 1.51 8.13 -2.38 -0.02 1.49 16 32 H 0.13 6.50 5.69 -2.38 -0.01 6.48 16 33 H 0.11 4.93 6.78 -2.39 -0.02 4.92 16 34 H 0.27 13.84 8.31 -92.70 -0.77 13.07 16 35 H 0.12 3.68 7.68 -2.39 -0.02 3.66 16 36 H 0.13 3.38 6.17 -2.39 -0.01 3.37 16 37 H 0.13 2.96 6.02 -2.91 -0.02 2.94 16 38 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 39 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 40 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 41 H 0.13 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -70.46 362.78 2.59 -67.88 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 1.06 Total: 30.08 kcal Atomic # 6 Polarization: -35.83 SS G_CDS: 4.81 Total: -31.03 kcal Atomic # 7 Polarization: -90.14 SS G_CDS: -0.54 Total: -90.68 kcal Atomic # 8 Polarization: -136.07 SS G_CDS: -4.44 Total: -140.51 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 16 Polarization: 120.77 SS G_CDS: -0.32 Total: 120.44 kcal Total: -70.46 2.59 -67.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416403760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.010 kcal (2) G-P(sol) polarization free energy of solvation -70.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds