Wall clock time and date at job start Tue Mar 31 2020 22:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35895 * 117.00395 * 2 1 4 4 C 1.38758 * 120.05478 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94341 * 180.02562 * 4 3 2 6 6 C 1.38282 * 120.05728 * 0.02562 * 5 4 3 7 7 C 1.38253 * 120.11127 * 0.02562 * 6 5 4 8 8 S 1.76197 * 119.97014 * 179.97438 * 7 6 5 9 9 O 1.42100 * 102.99630 * 203.84954 * 8 7 6 10 10 C 1.81404 * 103.00031 * 90.00232 * 8 7 6 11 11 C 1.50691 * 109.47331 * 179.97438 * 10 8 7 12 12 O 1.21278 * 120.00028 * 0.02562 * 11 10 8 13 13 N 1.34781 * 120.00407 * 179.97438 * 11 10 8 14 14 C 1.47575 * 134.49576 * 180.02562 * 13 11 10 15 15 C 1.53952 * 86.11883 * 155.35932 * 14 13 11 16 16 O 1.42896 * 113.73968 * 269.15538 * 15 14 13 17 17 C 1.50696 * 113.74096 * 137.94737 * 15 14 13 18 18 H 1.07999 * 120.00319 * 0.02562 * 17 15 14 19 19 C 1.37885 * 119.99717 * 179.97438 * 17 15 14 20 20 N 1.31516 * 119.99913 * 180.02562 * 19 17 15 21 21 Si 1.86798 * 119.99766 * 0.02562 * 19 17 15 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 C 1.47581 * 134.48697 * 359.97438 * 13 11 10 26 26 C 1.38162 * 120.05189 * 0.23069 * 7 6 5 27 27 H 1.08998 * 109.47669 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46681 * 299.99821 * 1 2 3 29 29 H 1.08995 * 109.47111 * 59.99152 * 1 2 3 30 30 H 1.08003 * 120.03088 * 0.03907 * 4 3 2 31 31 H 1.07999 * 119.97059 * 180.02562 * 5 4 3 32 32 H 1.07997 * 119.94588 * 179.97438 * 6 5 4 33 33 H 1.09006 * 109.46870 * 59.99478 * 10 8 7 34 34 H 1.09001 * 109.47011 * 300.00003 * 10 8 7 35 35 H 1.08992 * 113.77450 * 41.05752 * 14 13 11 36 36 H 1.09008 * 113.87093 * 269.66964 * 14 13 11 37 37 H 0.96697 * 113.99744 * 178.07719 * 16 15 14 38 38 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 39 39 H 1.09002 * 113.76822 * 90.34347 * 25 13 11 40 40 H 1.08998 * 113.77440 * 318.94601 * 25 13 11 41 41 H 1.08000 * 120.02467 * 179.73963 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9211 3.6047 0.0000 6 6 3.3021 3.6757 -0.0016 7 6 4.0561 2.5169 -0.0032 8 16 5.8156 2.6117 -0.0059 9 8 6.2019 1.3645 -0.5669 10 6 6.2258 2.6329 1.7610 11 6 7.7213 2.7127 1.9285 12 8 8.4396 2.7519 0.9522 13 7 8.2605 2.7416 3.1634 14 6 9.6374 2.8156 3.6893 15 6 9.0090 3.4229 4.9567 16 8 8.9219 4.8490 4.9289 17 6 9.5989 2.8951 6.2391 18 1 10.3886 2.1591 6.2075 19 6 9.1310 3.3527 7.4527 20 7 9.6461 2.8925 8.5719 21 14 7.7655 4.6262 7.5072 22 1 8.3581 5.9879 7.5036 23 1 6.8898 4.4643 6.3189 24 1 6.9631 4.4389 8.7427 25 6 7.7110 2.7128 4.5328 26 6 3.4312 1.2847 -0.0080 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 0.2129 2.3204 0.0016 31 1 1.3342 4.5113 0.0008 32 1 3.7924 4.6379 -0.0024 33 1 5.8560 1.7214 2.2308 34 1 5.7604 3.4989 2.2317 35 1 10.2798 3.5063 3.1432 36 1 10.1005 1.8422 3.8517 37 1 8.5010 5.2325 5.7105 38 1 9.3172 3.2147 9.4256 39 1 7.6057 1.7084 4.9429 40 1 6.8157 3.3214 4.6599 41 1 4.0206 0.3798 -0.0135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424795050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:20 Heat of formation + Delta-G solvation = -70.671528 kcal Electronic energy + Delta-G solvation = -26492.396266 eV Core-core repulsion = 22467.048958 eV Total energy + Delta-G solvation = -4025.347308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.38350 -39.82143 -37.77700 -37.65682 -35.80070 -34.55784 -32.59757 -31.53516 -30.66813 -30.39931 -28.19782 -27.67714 -25.61845 -25.18323 -23.17242 -22.63634 -20.45213 -19.18568 -18.62520 -17.51954 -17.28400 -16.72740 -16.61682 -16.44605 -16.29633 -16.12229 -15.59810 -15.48892 -15.17000 -14.39514 -14.24363 -13.93093 -13.82878 -13.66945 -13.42901 -13.05182 -12.87986 -12.71615 -12.57951 -12.29877 -12.24488 -12.17495 -11.78339 -11.54757 -11.33517 -11.30335 -11.02367 -10.66374 -10.40117 -10.19319 -9.94148 -9.55308 -9.40104 -9.08486 -8.77212 -8.60742 -8.48217 -8.13155 -6.46849 -4.53243 0.55061 1.09507 1.64539 2.56148 2.89007 2.94341 2.94482 2.95528 3.09693 3.33864 3.37568 3.84829 3.97575 4.40017 4.54310 4.57896 4.68974 4.72656 4.72976 4.86462 5.03451 5.05103 5.07219 5.13461 5.21637 5.49084 5.53059 5.58887 5.87658 5.94512 5.97703 5.99854 6.01116 6.17376 6.28987 6.29252 6.33002 6.54699 7.02842 7.14242 7.97014 8.16169 8.39120 8.45490 8.57530 9.10139 10.65399 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014624 B = 0.002828 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.243305 B = 9897.642504 C =10775.824040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.110 3.890 4 C -0.177 4.177 5 C -0.098 4.098 6 C -0.079 4.079 7 C -0.436 4.436 8 S 1.390 4.610 9 O -0.832 6.832 10 C -0.487 4.487 11 C 0.558 3.442 12 O -0.559 6.559 13 N -0.627 5.627 14 C 0.127 3.873 15 C 0.196 3.804 16 O -0.552 6.552 17 C -0.537 4.537 18 H 0.092 0.908 19 C 0.079 3.921 20 N -0.875 5.875 21 Si 0.860 3.140 22 H -0.265 1.265 23 H -0.257 1.257 24 H -0.284 1.284 25 C 0.062 3.938 26 C -0.084 4.084 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.141 0.859 33 H 0.114 0.886 34 H 0.141 0.859 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.351 0.649 38 H 0.271 0.729 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.495 3.376 -14.350 24.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.063 3.937 4 C -0.196 4.196 5 C -0.117 4.117 6 C -0.099 4.099 7 C -0.531 4.531 8 S 1.583 4.417 9 O -0.827 6.827 10 C -0.624 4.624 11 C 0.346 3.654 12 O -0.440 6.440 13 N -0.360 5.360 14 C 0.005 3.995 15 C 0.155 3.845 16 O -0.363 6.363 17 C -0.575 4.575 18 H 0.110 0.890 19 C -0.126 4.126 20 N -0.511 5.511 21 Si 0.689 3.311 22 H -0.192 1.192 23 H -0.183 1.183 24 H -0.210 1.210 25 C -0.061 4.061 26 C -0.104 4.104 27 H 0.119 0.881 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.159 0.841 33 H 0.132 0.868 34 H 0.159 0.841 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.204 0.796 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.233 3.111 -16.141 24.550 hybrid contribution -2.484 -1.093 2.081 3.420 sum -20.718 2.018 -14.060 25.120 Atomic orbital electron populations 1.23077 0.78348 1.04142 1.01274 1.86115 1.21417 1.26796 1.88779 1.19158 0.92447 0.84410 0.97638 1.21421 1.00103 0.92591 1.05478 1.21092 0.94920 0.97061 0.98642 1.20817 0.93530 0.97296 0.98246 1.28184 1.20851 0.96082 1.07936 1.70410 0.78270 1.09174 0.83890 1.93077 1.76496 1.45952 1.67204 1.28158 0.99927 1.09509 1.24758 1.19022 0.87770 0.76367 0.82212 1.90699 1.62717 1.52927 1.37620 1.50051 1.11153 1.70221 1.04560 1.23350 0.84258 1.00526 0.91353 1.20531 0.90643 0.78746 0.94584 1.86473 1.83290 1.21174 1.45341 1.21229 1.22393 1.26132 0.87715 0.89011 1.25027 0.96060 0.95883 0.95658 1.69857 1.41218 1.42185 0.97791 0.87318 0.82846 0.82593 0.78381 1.19161 1.18282 1.21020 1.24672 1.00932 1.02181 0.78353 1.20482 0.91631 0.98384 0.99873 0.88098 0.92597 0.92634 0.85244 0.85059 0.84142 0.86781 0.84088 0.90203 0.88639 0.79625 0.91843 0.88703 0.91150 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.62 10.50 -19.41 -0.20 -3.83 16 3 C 0.11 1.29 6.69 -39.22 -0.26 1.03 16 4 C -0.18 -1.60 9.04 -39.43 -0.36 -1.96 16 5 C -0.10 -0.78 10.04 -39.61 -0.40 -1.18 16 6 C -0.08 -0.67 9.75 -39.56 -0.39 -1.05 16 7 C -0.44 -4.93 5.61 -39.60 -0.22 -5.15 16 8 S 1.39 17.37 12.68 -107.50 -1.36 16.01 16 9 O -0.83 -15.40 16.89 -35.23 -0.60 -15.99 16 10 C -0.49 -6.74 6.12 36.00 0.22 -6.51 16 11 C 0.56 10.38 8.08 -10.99 -0.09 10.29 16 12 O -0.56 -11.72 16.59 5.56 0.09 -11.63 16 13 N -0.63 -12.28 3.61 -178.33 -0.64 -12.93 16 14 C 0.13 2.59 8.23 -2.97 -0.02 2.57 16 15 C 0.20 4.32 1.06 -90.86 -0.10 4.23 16 16 O -0.55 -12.36 13.32 -35.23 -0.47 -12.83 16 17 C -0.54 -13.57 9.20 -34.44 -0.32 -13.89 16 18 H 0.09 2.50 8.06 -52.49 -0.42 2.07 16 19 C 0.08 2.03 5.47 -17.82 -0.10 1.94 16 20 N -0.88 -24.13 13.96 55.43 0.77 -23.36 16 21 Si 0.86 18.23 24.34 -169.99 -4.14 14.09 16 22 H -0.27 -5.47 7.06 56.52 0.40 -5.07 16 23 H -0.26 -5.00 5.28 56.52 0.30 -4.70 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 C 0.06 1.20 7.20 -2.99 -0.02 1.18 16 26 C -0.08 -1.12 9.38 -39.44 -0.37 -1.49 16 27 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.30 7.66 -51.92 -0.40 -0.09 16 29 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.13 0.83 6.30 -52.48 -0.33 0.50 16 31 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 33 H 0.11 1.59 8.14 -51.92 -0.42 1.17 16 34 H 0.14 1.50 8.14 -51.92 -0.42 1.07 16 35 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 36 H 0.10 1.85 8.09 -51.92 -0.42 1.43 16 37 H 0.35 7.48 3.31 45.56 0.15 7.63 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.09 1.79 8.09 -51.93 -0.42 1.37 16 40 H 0.07 1.26 6.98 -51.93 -0.36 0.90 16 41 H 0.14 2.04 7.45 -52.49 -0.39 1.65 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -36.06 357.60 -7.35 -43.41 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -4.77 Total: 10.48 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -1.43 Total: -8.83 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.13 Total: -36.28 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -1.18 Total: -44.27 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -4.14 Total: 14.09 kcal Atomic # 16 Polarization: 17.37 SS G_CDS: -1.36 Total: 16.01 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.06 -7.35 -43.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424795050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.257 kcal (2) G-P(sol) polarization free energy of solvation -36.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds