Wall clock time and date at job start Tue Mar 31 2020 22:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35895 * 117.00395 * 2 1 4 4 C 1.38758 * 120.05478 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94341 * 180.02562 * 4 3 2 6 6 C 1.38282 * 120.05728 * 0.02562 * 5 4 3 7 7 C 1.38253 * 120.11127 * 0.02562 * 6 5 4 8 8 S 1.76197 * 119.97014 * 179.97438 * 7 6 5 9 9 O 1.42100 * 102.99630 * 203.84954 * 8 7 6 10 10 C 1.81404 * 103.00031 * 90.00232 * 8 7 6 11 11 C 1.50691 * 109.47331 * 179.97438 * 10 8 7 12 12 O 1.21278 * 120.00028 * 0.02562 * 11 10 8 13 13 N 1.34781 * 120.00407 * 179.97438 * 11 10 8 14 14 C 1.47575 * 134.49576 * 180.02562 * 13 11 10 15 15 C 1.53952 * 86.11883 * 155.35932 * 14 13 11 16 16 O 1.42896 * 113.73968 * 269.15538 * 15 14 13 17 17 C 1.50696 * 113.74096 * 137.94737 * 15 14 13 18 18 H 1.07999 * 120.00319 * 0.02562 * 17 15 14 19 19 C 1.37885 * 119.99717 * 179.97438 * 17 15 14 20 20 N 1.31516 * 119.99913 * 180.02562 * 19 17 15 21 21 Si 1.86798 * 119.99766 * 0.02562 * 19 17 15 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 C 1.47581 * 134.48697 * 359.97438 * 13 11 10 26 26 C 1.38162 * 120.05189 * 0.23069 * 7 6 5 27 27 H 1.08998 * 109.47669 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46681 * 299.99821 * 1 2 3 29 29 H 1.08995 * 109.47111 * 59.99152 * 1 2 3 30 30 H 1.08003 * 120.03088 * 0.03907 * 4 3 2 31 31 H 1.07999 * 119.97059 * 180.02562 * 5 4 3 32 32 H 1.07997 * 119.94588 * 179.97438 * 6 5 4 33 33 H 1.09006 * 109.46870 * 59.99478 * 10 8 7 34 34 H 1.09001 * 109.47011 * 300.00003 * 10 8 7 35 35 H 1.08992 * 113.77450 * 41.05752 * 14 13 11 36 36 H 1.09008 * 113.87093 * 269.66964 * 14 13 11 37 37 H 0.96697 * 113.99744 * 178.07719 * 16 15 14 38 38 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 39 39 H 1.09002 * 113.76822 * 90.34347 * 25 13 11 40 40 H 1.08998 * 113.77440 * 318.94601 * 25 13 11 41 41 H 1.08000 * 120.02467 * 179.73963 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9211 3.6047 0.0000 6 6 3.3021 3.6757 -0.0016 7 6 4.0561 2.5169 -0.0032 8 16 5.8156 2.6117 -0.0059 9 8 6.2019 1.3645 -0.5669 10 6 6.2258 2.6329 1.7610 11 6 7.7213 2.7127 1.9285 12 8 8.4396 2.7519 0.9522 13 7 8.2605 2.7416 3.1634 14 6 9.6374 2.8156 3.6893 15 6 9.0090 3.4229 4.9567 16 8 8.9219 4.8490 4.9289 17 6 9.5989 2.8951 6.2391 18 1 10.3886 2.1591 6.2075 19 6 9.1310 3.3527 7.4527 20 7 9.6461 2.8925 8.5719 21 14 7.7655 4.6262 7.5072 22 1 8.3581 5.9879 7.5036 23 1 6.8898 4.4643 6.3189 24 1 6.9631 4.4389 8.7427 25 6 7.7110 2.7128 4.5328 26 6 3.4312 1.2847 -0.0080 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 0.2129 2.3204 0.0016 31 1 1.3342 4.5113 0.0008 32 1 3.7924 4.6379 -0.0024 33 1 5.8560 1.7214 2.2308 34 1 5.7604 3.4989 2.2317 35 1 10.2798 3.5063 3.1432 36 1 10.1005 1.8422 3.8517 37 1 8.5010 5.2325 5.7105 38 1 9.3172 3.2147 9.4256 39 1 7.6057 1.7084 4.9429 40 1 6.8157 3.3214 4.6599 41 1 4.0206 0.3798 -0.0135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424795050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:18 Heat of formation + Delta-G solvation = -100.723323 kcal Electronic energy + Delta-G solvation = -26493.699409 eV Core-core repulsion = 22467.048958 eV Total energy + Delta-G solvation = -4026.650451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.41231 -41.09290 -39.35469 -38.38193 -37.03827 -36.25724 -34.54620 -32.30362 -31.92416 -31.18766 -29.77995 -28.22361 -27.20234 -26.96281 -23.93003 -23.34974 -22.12331 -20.39616 -19.78150 -19.33863 -18.39949 -18.18967 -18.00685 -17.33649 -17.06033 -16.99182 -16.83673 -16.74165 -16.23560 -15.67696 -15.36795 -15.33261 -15.14082 -14.94164 -14.58608 -14.41740 -14.27804 -13.89889 -13.77739 -13.71028 -13.35662 -12.95304 -12.89506 -12.77562 -12.66375 -12.42308 -12.15998 -12.08755 -11.93837 -11.53850 -11.45658 -11.12435 -10.91938 -10.52652 -10.30689 -9.76875 -9.54917 -9.29011 -8.42118 -6.55769 -0.26266 0.37532 0.69660 1.25761 1.31089 1.43522 1.45014 1.64217 1.89225 2.19751 2.30105 2.59257 2.77082 2.85180 3.18083 3.44058 3.75170 3.82577 3.97533 4.05163 4.17290 4.30176 4.31209 4.32495 4.40059 4.40634 4.45282 4.52159 4.62030 4.64305 4.66354 4.74602 4.83696 4.91284 5.16956 5.27745 5.28035 5.34743 5.69519 6.03643 6.35152 6.52109 6.63506 6.72104 6.91525 7.12735 8.73523 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014624 B = 0.002828 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.243305 B = 9897.642504 C =10775.824040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.349 6.349 3 C 0.091 3.909 4 C -0.172 4.172 5 C -0.091 4.091 6 C -0.070 4.070 7 C -0.442 4.442 8 S 1.436 4.564 9 O -0.903 6.903 10 C -0.484 4.484 11 C 0.551 3.449 12 O -0.587 6.587 13 N -0.630 5.630 14 C 0.120 3.880 15 C 0.189 3.811 16 O -0.554 6.554 17 C -0.547 4.547 18 H 0.051 0.949 19 C 0.022 3.978 20 N -0.927 5.927 21 Si 0.922 3.078 22 H -0.253 1.253 23 H -0.222 1.222 24 H -0.285 1.285 25 C 0.073 3.927 26 C -0.124 4.124 27 H 0.113 0.887 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.158 0.842 31 H 0.174 0.826 32 H 0.187 0.813 33 H 0.113 0.887 34 H 0.185 0.815 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.357 0.643 38 H 0.273 0.727 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.648 6.660 -15.040 28.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.264 6.264 3 C 0.045 3.955 4 C -0.190 4.190 5 C -0.110 4.110 6 C -0.089 4.089 7 C -0.539 4.539 8 S 1.631 4.369 9 O -0.899 6.899 10 C -0.619 4.619 11 C 0.341 3.659 12 O -0.470 6.470 13 N -0.363 5.363 14 C -0.002 4.002 15 C 0.149 3.851 16 O -0.366 6.366 17 C -0.585 4.585 18 H 0.070 0.930 19 C -0.179 4.179 20 N -0.564 5.564 21 Si 0.746 3.254 22 H -0.178 1.178 23 H -0.145 1.145 24 H -0.211 1.211 25 C -0.049 4.049 26 C -0.144 4.144 27 H 0.132 0.868 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.176 0.824 31 H 0.191 0.809 32 H 0.204 0.796 33 H 0.131 0.869 34 H 0.202 0.798 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.210 0.790 38 H 0.083 0.917 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -22.370 6.384 -16.858 28.729 hybrid contribution -1.215 -2.147 2.273 3.355 sum -23.585 4.237 -14.584 28.052 Atomic orbital electron populations 1.23375 0.76061 1.05593 1.02618 1.86072 1.23932 1.27383 1.88991 1.19316 0.92116 0.85610 0.98507 1.21835 1.01511 0.91978 1.03714 1.21654 0.94998 0.98026 0.96307 1.21414 0.94028 0.97787 0.95691 1.27824 1.19452 0.96687 1.09941 1.69522 0.78508 1.06676 0.82148 1.92970 1.79048 1.48530 1.69320 1.28197 0.96361 1.11360 1.26023 1.19777 0.89659 0.75196 0.81224 1.90689 1.64040 1.53891 1.38359 1.50052 1.10439 1.70670 1.05135 1.23308 0.85280 1.00500 0.91115 1.20480 0.92603 0.78808 0.93258 1.86467 1.83640 1.20976 1.45539 1.21357 1.21772 1.25554 0.89834 0.93034 1.25949 0.98889 0.98195 0.94824 1.70018 1.43434 1.44318 0.98645 0.86281 0.79795 0.79682 0.79613 1.17823 1.14523 1.21123 1.24502 1.00295 1.02325 0.77810 1.20400 0.92739 0.98024 1.03268 0.86847 0.91219 0.91116 0.82430 0.80874 0.79598 0.86892 0.79775 0.90291 0.88705 0.79013 0.91721 0.88538 0.88311 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.35 -7.93 10.50 -92.37 -0.97 -8.90 16 3 C 0.09 2.05 6.69 22.51 0.15 2.20 16 4 C -0.17 -2.47 9.04 22.37 0.20 -2.27 16 5 C -0.09 -0.95 10.04 22.25 0.22 -0.72 16 6 C -0.07 -0.84 9.75 22.28 0.22 -0.62 16 7 C -0.44 -9.20 5.61 22.26 0.12 -9.08 16 8 S 1.44 34.56 12.68 -56.49 -0.72 33.84 16 9 O -0.90 -34.87 16.89 -148.98 -2.52 -37.38 16 10 C -0.48 -12.24 6.12 71.23 0.44 -11.80 16 11 C 0.55 19.76 8.08 87.65 0.71 20.46 16 12 O -0.59 -24.49 16.59 -3.02 -0.05 -24.54 16 13 N -0.63 -23.78 3.61 -840.32 -3.03 -26.81 16 14 C 0.12 4.94 8.23 86.48 0.71 5.65 16 15 C 0.19 8.16 1.06 -10.89 -0.01 8.15 16 16 O -0.55 -23.42 13.32 -148.98 -1.98 -25.40 16 17 C -0.55 -28.21 9.20 25.60 0.24 -27.98 16 18 H 0.05 2.97 8.06 -2.91 -0.02 2.95 16 19 C 0.02 1.15 5.47 84.66 0.46 1.61 16 20 N -0.93 -52.46 13.96 21.45 0.30 -52.16 16 21 Si 0.92 35.95 24.34 68.60 1.67 37.62 16 22 H -0.25 -9.35 7.06 99.48 0.70 -8.64 16 23 H -0.22 -7.30 5.28 99.48 0.53 -6.77 16 24 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 25 C 0.07 2.67 7.20 86.47 0.62 3.29 16 26 C -0.12 -3.37 9.38 22.36 0.21 -3.16 16 27 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 0.58 7.66 -2.38 -0.02 0.56 16 29 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 30 H 0.16 1.28 6.30 -2.91 -0.02 1.26 16 31 H 0.17 0.42 8.06 -2.91 -0.02 0.40 16 32 H 0.19 0.46 8.06 -2.91 -0.02 0.44 16 33 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 34 H 0.18 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 36 H 0.09 3.82 8.09 -2.38 -0.02 3.80 16 37 H 0.36 13.90 3.31 -74.06 -0.24 13.66 16 38 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 39 H 0.10 3.49 8.09 -2.39 -0.02 3.47 16 40 H 0.10 3.04 6.98 -2.39 -0.02 3.03 16 41 H 0.10 3.26 7.45 -2.91 -0.02 3.24 16 Total: -1.00 -84.38 357.60 -1.25 -85.63 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.64 Total: 31.09 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 5.41 Total: -12.97 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -2.73 Total: -78.97 kcal Atomic # 8 Polarization: -90.71 SS G_CDS: -5.52 Total: -96.23 kcal Atomic # 14 Polarization: 35.95 SS G_CDS: 1.67 Total: 37.62 kcal Atomic # 16 Polarization: 34.56 SS G_CDS: -0.72 Total: 33.84 kcal Total: -84.38 -1.25 -85.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424795050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.091 kcal (2) G-P(sol) polarization free energy of solvation -84.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds