Wall clock time and date at job start Tue Mar 31 2020 22:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 116.99552 * 2 1 4 4 O 1.20823 * 120.00230 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99746 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.47009 * 179.97438 * 5 3 2 7 7 C 1.36942 * 120.00249 * 274.99714 * 6 5 3 8 8 H 1.07996 * 119.99530 * 146.61264 * 7 6 5 9 9 C 1.38810 * 119.99950 * 326.61588 * 7 6 5 10 10 N 1.31624 * 119.99985 * 335.88748 * 9 7 6 11 11 Si 1.86798 * 119.99967 * 155.89105 * 9 7 6 12 12 H 1.48499 * 109.47083 * 89.99943 * 11 9 7 13 13 H 1.48504 * 109.47082 * 209.99970 * 11 9 7 14 14 H 1.48498 * 109.47289 * 329.99499 * 11 9 7 15 15 S 1.65604 * 120.00078 * 95.00050 * 6 5 3 16 16 O 1.42098 * 106.40222 * 208.78513 * 15 6 5 17 17 O 1.42105 * 106.39708 * 341.70771 * 15 6 5 18 18 C 1.76206 * 107.21713 * 95.24238 * 15 6 5 19 19 C 1.38229 * 120.00245 * 269.72847 * 18 15 6 20 20 C 1.38233 * 120.00190 * 179.78843 * 19 18 15 21 21 C 1.38238 * 119.99569 * 0.44624 * 20 19 18 22 22 C 1.50700 * 119.99690 * 179.83253 * 21 20 19 23 23 C 1.52996 * 117.50137 * 8.72092 * 22 21 20 24 24 C 1.52998 * 117.50015 * 300.06226 * 22 21 20 25 25 C 1.38228 * 120.00138 * 359.80766 * 21 20 19 26 26 C 1.38234 * 119.99334 * 90.00710 * 18 15 6 27 27 H 1.09003 * 109.47793 * 300.00313 * 1 2 3 28 28 H 1.08999 * 109.47419 * 60.00483 * 1 2 3 29 29 H 1.09005 * 109.46937 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47051 * 59.99834 * 5 3 2 31 31 H 1.08998 * 109.47319 * 299.99973 * 5 3 2 32 32 H 0.96997 * 120.00197 * 179.97438 * 10 9 7 33 33 H 1.08003 * 119.99747 * 359.97438 * 19 18 15 34 34 H 1.08001 * 120.00405 * 180.27423 * 20 19 18 35 35 H 1.09007 * 115.54844 * 154.39454 * 22 21 20 36 36 H 1.08995 * 117.49985 * 0.02562 * 23 22 21 37 37 H 1.09004 * 117.50175 * 145.01899 * 23 22 21 38 38 H 1.09007 * 117.49736 * 214.98052 * 24 22 21 39 39 H 1.08995 * 117.49883 * 359.97348 * 24 22 21 40 40 H 1.07996 * 120.00233 * 180.02562 * 25 21 20 41 41 H 1.08000 * 120.00649 * 359.96997 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 7 3.9815 2.6799 -0.0011 7 6 4.0761 3.3656 -1.1827 8 1 3.8462 4.4203 -1.2148 9 6 4.4674 2.7049 -2.3391 10 7 5.1844 1.6041 -2.2575 11 14 3.9766 3.3781 -4.0110 12 1 5.0206 4.3183 -4.4919 13 1 3.8381 2.2569 -4.9749 14 1 2.6808 4.0942 -3.8953 15 16 4.3366 3.4389 1.4273 16 8 4.0388 4.8150 1.2354 17 8 3.7505 2.6528 2.4558 18 6 6.0809 3.3341 1.6539 19 6 6.6266 2.2604 2.3323 20 6 7.9953 2.1761 2.5063 21 6 8.8176 3.1702 2.0099 22 6 10.3095 3.0802 2.2028 23 6 10.8709 1.7752 2.7710 24 6 10.8347 3.0354 3.6392 25 6 8.2716 4.2466 1.3361 26 6 6.9031 4.3287 1.1583 27 1 -0.3635 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.9556 0.7810 -0.8908 31 1 3.9563 0.7807 0.8891 32 1 5.4576 1.1422 -3.0656 33 1 5.9837 1.4859 2.7237 34 1 8.4220 1.3349 3.0324 35 1 10.9119 3.6073 1.4629 36 1 10.1613 0.9817 3.0049 37 1 11.8428 1.4439 2.4052 38 1 11.7828 3.5327 3.8441 39 1 10.1012 3.0715 4.4445 40 1 8.9140 5.0230 0.9479 41 1 6.4765 5.1697 0.6318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450992351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:21 Heat of formation + Delta-G solvation = -113.119961 kcal Electronic energy + Delta-G solvation = -27877.891721 eV Core-core repulsion = 23850.703712 eV Total energy + Delta-G solvation = -4027.188010 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -41.32953 -40.55443 -38.01105 -37.92613 -37.61209 -36.88971 -36.53412 -33.57742 -32.04265 -31.61998 -30.13457 -27.93210 -25.94890 -25.17107 -23.88710 -23.05507 -22.22854 -21.44398 -20.44513 -19.41693 -18.94583 -18.61802 -18.20788 -17.30506 -17.21845 -17.08169 -16.62722 -16.47269 -15.97358 -15.72764 -15.30871 -15.07241 -14.57326 -14.48348 -14.40767 -14.08833 -14.00097 -13.69996 -13.42873 -13.10191 -12.91152 -12.90778 -12.86206 -12.62791 -12.62545 -12.41994 -12.39364 -12.11450 -12.07842 -11.73251 -11.71905 -11.59853 -11.49277 -11.24048 -11.12381 -9.94029 -9.90299 -9.72735 -8.48185 -6.11208 -0.30917 0.01089 0.40464 1.31408 1.42163 1.48706 1.61800 1.83818 2.23412 2.40580 2.64752 2.84341 3.09574 3.19326 3.55532 3.61304 3.84758 3.96376 4.03306 4.06780 4.14357 4.18390 4.28680 4.35653 4.37192 4.42976 4.58263 4.68662 4.77215 4.79331 4.86396 4.91593 5.07086 5.10741 5.14502 5.26084 5.30523 5.32422 5.39395 5.52126 5.53833 5.98189 6.29200 6.71706 6.88802 7.19025 8.51870 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012523 B = 0.004290 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.400568 B = 6525.168954 C = 7413.304440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.364 6.364 3 C 0.446 3.554 4 O -0.533 6.533 5 C 0.128 3.872 6 N -0.807 5.807 7 C -0.278 4.278 8 H 0.092 0.908 9 C 0.013 3.987 10 N -0.844 5.844 11 Si 0.973 3.027 12 H -0.262 1.262 13 H -0.263 1.263 14 H -0.276 1.276 15 S 2.573 3.427 16 O -1.009 7.009 17 O -1.020 7.020 18 C -0.677 4.677 19 C -0.040 4.040 20 C -0.146 4.146 21 C -0.012 4.012 22 C -0.140 4.140 23 C -0.167 4.167 24 C -0.158 4.158 25 C -0.143 4.143 26 C -0.035 4.035 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.140 0.860 30 H 0.150 0.850 31 H 0.116 0.884 32 H 0.286 0.714 33 H 0.135 0.865 34 H 0.154 0.846 35 H 0.127 0.873 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.090 0.910 40 H 0.150 0.850 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.830 -5.422 3.493 10.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.288 3.712 4 O -0.421 6.421 5 C -0.001 4.001 6 N -0.630 5.630 7 C -0.422 4.422 8 H 0.110 0.890 9 C -0.197 4.197 10 N -0.482 5.482 11 Si 0.796 3.204 12 H -0.187 1.187 13 H -0.188 1.188 14 H -0.201 1.201 15 S 2.678 3.322 16 O -0.999 6.999 17 O -1.010 7.010 18 C -0.762 4.762 19 C -0.059 4.059 20 C -0.165 4.165 21 C -0.012 4.012 22 C -0.158 4.158 23 C -0.204 4.204 24 C -0.195 4.195 25 C -0.161 4.161 26 C -0.055 4.055 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.158 0.842 30 H 0.167 0.833 31 H 0.134 0.866 32 H 0.096 0.904 33 H 0.153 0.847 34 H 0.172 0.828 35 H 0.145 0.855 36 H 0.118 0.882 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.109 0.891 40 H 0.168 0.832 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.131 -4.855 4.226 10.370 hybrid contribution -0.182 0.482 -0.848 0.992 sum 7.948 -4.373 3.377 9.680 Atomic orbital electron populations 1.23541 0.75368 1.05728 1.02111 1.86492 1.24746 1.32581 1.84194 1.25109 0.93579 0.81390 0.71134 1.90579 1.67573 1.37633 1.46352 1.20971 0.85584 0.85168 1.08365 1.52911 1.70229 1.19286 1.20567 1.19642 1.41665 0.96602 0.84293 0.89038 1.26256 0.93448 0.97042 1.02977 1.69902 1.28447 1.17905 1.31907 0.85233 0.79186 0.78874 0.77154 1.18684 1.18766 1.20071 1.08398 0.75618 0.73832 0.74310 1.93328 1.84844 1.35400 1.86335 1.93314 1.77953 1.70664 1.59031 1.31440 1.28786 1.04130 1.11825 1.20996 0.96560 0.94991 0.93362 1.21382 0.92518 1.00251 1.02306 1.19676 0.95025 0.92910 0.93600 1.21168 0.90165 1.04870 0.99592 1.23209 1.03343 0.90928 1.02914 1.23122 1.03199 1.01469 0.91717 1.21307 0.94211 0.99569 1.01029 1.20951 0.94499 0.96061 0.93952 0.92601 0.92383 0.84216 0.83303 0.86580 0.90355 0.84696 0.82840 0.85492 0.88246 0.86440 0.86330 0.89129 0.83217 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.55 113.37 1.20 1.92 16 2 O -0.36 -13.44 10.57 -51.43 -0.54 -13.99 16 3 C 0.45 20.18 8.00 71.24 0.57 20.75 16 4 O -0.53 -27.41 16.09 21.97 0.35 -27.06 16 5 C 0.13 5.78 5.57 85.63 0.48 6.26 16 6 N -0.81 -40.51 2.37 -347.18 -0.82 -41.33 16 7 C -0.28 -14.38 9.05 84.03 0.76 -13.62 16 8 H 0.09 4.97 7.45 -2.91 -0.02 4.95 16 9 C 0.01 0.63 4.97 84.86 0.42 1.06 16 10 N -0.84 -39.20 11.29 21.65 0.24 -38.96 16 11 Si 0.97 38.34 29.62 68.60 2.03 40.38 16 12 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 13 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 14 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 15 S 2.57 129.61 5.61 -56.49 -0.32 129.29 16 16 O -1.01 -56.40 16.28 -128.00 -2.08 -58.49 16 17 O -1.02 -52.73 16.07 -128.00 -2.06 -54.79 16 18 C -0.68 -29.49 5.97 22.27 0.13 -29.36 16 19 C -0.04 -1.50 9.52 22.27 0.21 -1.29 16 20 C -0.15 -4.49 9.30 22.27 0.21 -4.28 16 21 C -0.01 -0.34 5.61 -19.87 -0.11 -0.46 16 22 C -0.14 -2.89 6.04 -11.54 -0.07 -2.96 16 23 C -0.17 -2.73 9.86 30.62 0.30 -2.43 16 24 C -0.16 -2.59 10.17 30.62 0.31 -2.28 16 25 C -0.14 -4.66 9.74 22.27 0.22 -4.45 16 26 C -0.04 -1.43 9.52 22.27 0.21 -1.22 16 27 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 28 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16 29 H 0.14 2.57 8.14 -2.38 -0.02 2.55 16 30 H 0.15 6.69 5.31 -2.39 -0.01 6.67 16 31 H 0.12 4.70 7.46 -2.39 -0.02 4.68 16 32 H 0.29 12.18 8.31 -92.71 -0.77 11.41 16 33 H 0.14 4.79 7.61 -2.91 -0.02 4.77 16 34 H 0.15 3.63 6.03 -2.91 -0.02 3.61 16 35 H 0.13 2.29 8.14 -2.38 -0.02 2.27 16 36 H 0.10 1.64 6.18 -2.39 -0.01 1.63 16 37 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 41 H 0.12 5.13 7.62 -2.91 -0.02 5.11 16 Total: -1.00 -69.71 364.10 2.71 -67.00 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 1.06 Total: 30.30 kcal Atomic # 6 Polarization: -37.20 SS G_CDS: 4.84 Total: -32.36 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -0.58 Total: -80.29 kcal Atomic # 8 Polarization: -149.99 SS G_CDS: -4.33 Total: -154.32 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.38 kcal Atomic # 16 Polarization: 129.61 SS G_CDS: -0.32 Total: 129.29 kcal Total: -69.71 2.71 -67.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450992351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.116 kcal (2) G-P(sol) polarization free energy of solvation -69.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds