Wall clock time and date at job start Tue Mar 31 2020 23:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99834 * 2 1 4 4 H 1.48497 * 109.47097 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46899 * 299.99595 * 3 2 1 6 6 H 1.48495 * 109.47237 * 59.99358 * 3 2 1 7 7 C 1.37867 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00328 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00350 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47592 * 179.97438 * 9 7 2 11 11 S 1.81396 * 109.47504 * 179.97438 * 10 9 7 12 12 O 1.42108 * 110.54066 * 68.37426 * 11 10 9 13 13 O 1.42102 * 110.54207 * 291.62777 * 11 10 9 14 14 N 1.65598 * 104.45068 * 180.02562 * 11 10 9 15 15 C 1.39670 * 119.99987 * 65.00121 * 14 11 10 16 16 C 1.38978 * 119.96772 * 45.00056 * 15 14 11 17 17 C 1.38079 * 119.75464 * 180.02562 * 16 15 14 18 18 C 1.38265 * 120.24751 * 359.97438 * 17 16 15 19 19 C 1.38628 * 120.58150 * 359.97438 * 18 17 16 20 20 C 1.38503 * 119.97083 * 225.02367 * 15 14 11 21 21 N 1.39874 * 111.60943 * 179.97438 * 19 18 17 22 22 C 1.34770 * 124.97853 * 180.02562 * 21 19 18 23 23 N 1.34773 * 119.99848 * 179.97438 * 22 21 19 24 24 O 1.21587 * 120.00297 * 0.02562 * 22 21 19 25 25 C 1.46533 * 110.04204 * 0.02562 * 21 19 18 26 26 C 1.51240 * 130.88245 * 179.69176 * 18 17 16 27 27 H 0.96999 * 120.00128 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47002 * 59.99951 * 9 7 2 29 29 H 1.09003 * 109.47195 * 299.99723 * 9 7 2 30 30 H 1.09001 * 109.46923 * 59.99980 * 10 9 7 31 31 H 1.08996 * 109.46891 * 300.00434 * 10 9 7 32 32 H 0.97006 * 120.00154 * 245.00165 * 14 11 10 33 33 H 1.07998 * 120.12454 * 0.02562 * 16 15 14 34 34 H 1.08001 * 119.88307 * 180.02562 * 17 16 15 35 35 H 1.07995 * 119.88573 * 359.97438 * 20 15 14 36 36 H 0.96999 * 120.00055 * 0.02562 * 23 22 21 37 37 H 0.97003 * 119.99875 * 179.97438 * 23 22 21 38 38 H 1.08990 * 110.29389 * 118.93622 * 25 21 19 39 39 H 1.09006 * 110.29294 * 240.97182 * 25 21 19 40 40 H 1.09001 * 110.40891 * 298.82263 * 26 18 17 41 41 H 1.09003 * 110.40949 * 61.25580 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3384 -5.2331 0.0013 12 8 0.6640 -5.4201 -1.2355 13 8 0.6648 -5.4193 1.2386 14 7 2.5206 -6.3927 0.0020 15 6 3.3770 -6.5162 1.0983 16 6 2.8620 -6.4834 2.3887 17 6 3.7128 -6.6054 3.4694 18 6 5.0724 -6.7603 3.2715 19 6 5.5990 -6.7957 1.9896 20 6 4.7388 -6.6709 0.8986 21 7 6.9882 -6.9579 2.0077 22 6 7.7723 -7.0267 0.9138 23 7 9.1040 -7.1841 1.0481 24 8 7.2784 -6.9458 -0.1943 25 6 7.4660 -7.0421 3.3904 26 6 6.2064 -6.9073 4.2614 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8720 -3.6043 0.8905 31 1 2.8720 -3.6043 -0.8894 32 1 2.6183 -6.9862 -0.7591 33 1 1.8003 -6.3629 2.5457 34 1 3.3147 -6.5805 4.4731 35 1 5.1360 -6.6960 -0.1054 36 1 9.4981 -7.2482 1.9321 37 1 9.6684 -7.2339 0.2607 38 1 7.9498 -8.0030 3.5653 39 1 8.1581 -6.2269 3.6015 40 1 6.2738 -6.0238 4.8962 41 1 6.0679 -7.8025 4.8678 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487381323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:14 Heat of formation + Delta-G solvation = -69.439568 kcal Electronic energy + Delta-G solvation = -27126.895758 eV Core-core repulsion = 23133.894624 eV Total energy + Delta-G solvation = -3993.001135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -41.43578 -39.23286 -37.41036 -36.55815 -35.52533 -34.51750 -33.87888 -33.70352 -31.98075 -31.14535 -29.76747 -28.02317 -25.58389 -24.04761 -23.34336 -21.78432 -21.49072 -20.73158 -19.16411 -18.43349 -17.72820 -17.43062 -17.06319 -16.68603 -16.43701 -15.59729 -15.53971 -15.31049 -15.06611 -14.77580 -14.52863 -14.42085 -13.84580 -13.57152 -13.39962 -13.00283 -12.89626 -12.51541 -12.40475 -12.25551 -11.80698 -11.74534 -11.66334 -11.38129 -11.16380 -11.07472 -10.95645 -10.87099 -10.43882 -10.38420 -10.36675 -10.15668 -10.01952 -9.67352 -9.17078 -8.48573 -8.44914 -7.84323 -6.10496 -4.15531 0.62514 1.25199 1.35549 2.18892 2.79004 2.99781 3.27085 3.34276 3.38416 3.66004 3.67346 4.11376 4.18038 4.32195 4.39489 4.58964 4.63703 4.86515 4.94626 5.07956 5.19832 5.24916 5.40303 5.42185 5.45106 5.51331 5.68725 5.76511 5.89402 6.03116 6.31212 6.36880 6.41841 6.51021 6.58152 6.60683 6.87218 7.18165 7.31699 7.35018 7.37740 7.83380 8.12963 8.19786 8.88053 9.49112 11.00619 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010940 B = 0.003409 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.830273 B = 8211.565288 C = 9262.955192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.029 3.971 10 C -0.583 4.583 11 S 2.585 3.415 12 O -0.959 6.959 13 O -0.957 6.957 14 N -1.064 6.064 15 C 0.180 3.820 16 C -0.170 4.170 17 C -0.054 4.054 18 C -0.155 4.155 19 C 0.175 3.825 20 C -0.149 4.149 21 N -0.567 5.567 22 C 0.716 3.284 23 N -0.859 5.859 24 O -0.569 6.569 25 C 0.098 3.902 26 C -0.080 4.080 27 H 0.264 0.736 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.422 0.578 33 H 0.167 0.833 34 H 0.133 0.867 35 H 0.146 0.854 36 H 0.398 0.602 37 H 0.419 0.581 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.200 -17.650 9.733 27.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.557 4.557 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.717 4.717 11 S 2.685 3.315 12 O -0.950 6.950 13 O -0.947 6.947 14 N -0.811 5.811 15 C 0.082 3.918 16 C -0.192 4.192 17 C -0.073 4.073 18 C -0.160 4.160 19 C 0.079 3.921 20 C -0.173 4.173 21 N -0.294 5.294 22 C 0.417 3.583 23 N -0.428 5.428 24 O -0.444 6.444 25 C -0.024 4.024 26 C -0.117 4.117 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.258 0.742 33 H 0.184 0.816 34 H 0.151 0.849 35 H 0.164 0.836 36 H 0.226 0.774 37 H 0.252 0.748 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 16.711 -17.590 9.055 25.897 hybrid contribution 1.785 0.923 -0.311 2.034 sum 18.496 -16.668 8.744 26.389 Atomic orbital electron populations 1.69964 1.06080 1.27060 1.49786 1.25055 0.94968 0.99499 0.94928 0.86418 0.79973 0.83194 0.77751 1.19660 1.20784 1.20787 1.21038 0.93145 0.89676 1.51873 0.91970 1.18986 0.92625 0.90461 0.98964 1.30406 1.13647 1.17139 1.10530 1.06000 0.74583 0.76614 0.74303 1.93570 1.71109 1.85251 1.45046 1.93475 1.71352 1.84839 1.45032 1.53679 1.51013 1.50654 1.25762 1.17065 0.88632 0.99396 0.86663 1.21988 1.02930 1.03750 0.90556 1.20228 0.90346 0.97528 0.99207 1.19933 0.94539 1.08551 0.92945 1.17763 0.81557 0.98481 0.94299 1.20815 0.90810 1.06267 0.99422 1.44887 1.05389 1.72914 1.06201 1.15598 0.81657 0.77813 0.83250 1.42951 1.06055 1.80984 1.12807 1.90986 1.73340 1.56615 1.23505 1.22157 0.98131 1.02412 0.79694 1.21009 0.90193 1.03828 0.96689 0.92601 0.94781 0.94643 0.85985 0.85898 0.74220 0.81567 0.84904 0.83618 0.77372 0.74838 0.90118 0.90053 0.88900 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 9 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 10 C -0.58 -11.77 5.96 37.16 0.22 -11.55 16 11 S 2.59 47.78 5.38 -107.50 -0.58 47.20 16 12 O -0.96 -20.27 18.08 -57.54 -1.04 -21.31 16 13 O -0.96 -19.22 14.92 -57.54 -0.86 -20.08 16 14 N -1.06 -15.76 5.67 32.35 0.18 -15.58 16 15 C 0.18 2.66 6.11 -83.91 -0.51 2.14 16 16 C -0.17 -2.43 9.19 -39.37 -0.36 -2.80 16 17 C -0.05 -0.62 10.03 -39.63 -0.40 -1.02 16 18 C -0.16 -1.68 6.23 -104.20 -0.65 -2.33 16 19 C 0.18 2.25 6.62 -83.58 -0.55 1.69 16 20 C -0.15 -2.16 9.37 -39.02 -0.37 -2.53 16 21 N -0.57 -5.86 3.13 -118.27 -0.37 -6.23 16 22 C 0.72 8.08 8.70 -86.93 -0.76 7.33 16 23 N -0.86 -5.19 8.83 27.63 0.24 -4.95 16 24 O -0.57 -8.92 15.34 5.29 0.08 -8.84 16 25 C 0.10 0.56 6.32 -3.64 -0.02 0.53 16 26 C -0.08 -0.51 6.93 -27.24 -0.19 -0.70 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.12 2.29 8.14 -51.92 -0.42 1.87 16 31 H 0.12 2.29 8.14 -51.93 -0.42 1.87 16 32 H 0.42 5.27 8.92 -34.47 -0.31 4.96 16 33 H 0.17 2.57 5.49 -52.49 -0.29 2.28 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.15 2.27 6.27 -52.49 -0.33 1.94 16 36 H 0.40 1.11 7.77 -40.82 -0.32 0.79 16 37 H 0.42 2.04 8.93 -40.82 -0.36 1.67 16 38 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 357.12 15.07 5.38 5.38 Total: -1.00 -38.61 357.12 -10.33 -48.94 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -4.95 Total: 6.84 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -4.14 Total: -21.94 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.79 Total: -52.67 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -1.82 Total: -50.23 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 47.78 SS G_CDS: -0.58 Total: 47.20 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -38.61 -10.33 -48.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487381323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.498 kcal (2) G-P(sol) polarization free energy of solvation -38.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds