Wall clock time and date at job start Tue Mar 31 2020 22:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35740 * 117.00115 * 2 1 4 4 C 1.39017 * 119.88620 * 180.02562 * 3 2 1 5 5 C 1.37659 * 120.11328 * 180.02562 * 4 3 2 6 6 C 1.39969 * 119.88708 * 359.97438 * 5 4 3 7 7 C 1.46996 * 120.11662 * 180.02562 * 6 5 4 8 8 C 1.34984 * 120.00100 * 179.97438 * 7 6 5 9 9 C 1.46256 * 120.00004 * 179.72772 * 8 7 6 10 10 O 1.21725 * 119.99883 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00125 * 179.97438 * 9 8 7 12 12 S 1.65606 * 119.99882 * 179.97438 * 11 9 8 13 13 O 1.42097 * 104.27221 * 181.07030 * 12 11 9 14 14 O 1.42099 * 104.27736 * 308.92818 * 12 11 9 15 15 C 1.81403 * 104.44801 * 65.00107 * 12 11 9 16 16 C 1.53001 * 109.47061 * 179.97438 * 15 12 11 17 17 C 1.50695 * 109.46795 * 180.02562 * 16 15 12 18 18 H 1.07994 * 120.00540 * 0.02562 * 17 16 15 19 19 C 1.37887 * 119.99863 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99926 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99649 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47144 * 90.00068 * 21 19 17 23 23 H 1.48503 * 109.47062 * 210.00106 * 21 19 17 24 24 H 1.48502 * 109.47080 * 329.99686 * 21 19 17 25 25 C 1.39977 * 119.77312 * 0.27331 * 6 5 4 26 26 C 1.37660 * 119.88154 * 359.47351 * 25 6 5 27 27 H 1.09008 * 109.46992 * 299.99944 * 1 2 3 28 28 H 1.08996 * 109.47396 * 60.00117 * 1 2 3 29 29 H 1.09011 * 109.47179 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.94231 * 359.97376 * 4 3 2 31 31 H 1.07998 * 120.05927 * 179.97438 * 5 4 3 32 32 H 1.08000 * 120.00335 * 359.97438 * 7 6 5 33 33 H 1.07991 * 119.99836 * 359.97438 * 8 7 6 34 34 H 0.96990 * 119.99832 * 359.97438 * 11 9 8 35 35 H 1.09003 * 109.46906 * 299.99777 * 15 12 11 36 36 H 1.09000 * 109.47298 * 59.99662 * 15 12 11 37 37 H 1.09004 * 109.46800 * 299.99755 * 16 15 12 38 38 H 1.09000 * 109.47101 * 59.99835 * 16 15 12 39 39 H 0.97000 * 119.99441 * 180.02562 * 20 19 17 40 40 H 1.07996 * 120.05870 * 179.70791 * 25 6 5 41 41 H 1.08000 * 119.94282 * 180.25359 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4336 1.2794 -0.0005 5 6 4.0635 2.5035 0.0000 6 6 3.3035 3.6789 0.0005 7 6 3.9708 4.9886 0.0005 8 6 3.2357 6.1207 0.0005 9 6 3.8996 7.4239 0.0065 10 8 5.1152 7.4875 0.0120 11 7 3.1656 8.5542 0.0060 12 16 3.9175 10.0297 0.0135 13 8 2.8496 10.9669 0.0366 14 8 4.8424 9.9463 1.0890 15 6 4.7920 10.1001 -1.5743 16 6 5.5345 11.4330 -1.6889 17 6 6.2604 11.4916 -3.0082 18 1 6.1981 10.6616 -3.6963 19 6 7.0042 12.6052 -3.3369 20 7 7.6373 12.6566 -4.4884 21 14 7.1125 14.0407 -2.1464 22 1 8.2693 13.8429 -1.2366 23 1 7.2918 15.3029 -2.9079 24 1 5.8625 14.1173 -1.3484 25 6 1.9058 3.6029 0.0063 26 6 1.2858 2.3739 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0278 0.0005 30 1 4.0191 0.3719 -0.0005 31 1 5.1421 2.5568 0.0000 32 1 5.0494 5.0452 0.0005 33 1 2.1572 6.0641 0.0001 34 1 2.1970 8.5034 0.0013 35 1 5.5070 9.2793 -1.6320 36 1 4.0732 10.0137 -2.3891 37 1 4.8191 12.2534 -1.6314 38 1 6.2532 11.5197 -0.8741 39 1 8.1608 13.4398 -4.7194 40 1 1.3150 4.5069 0.0115 41 1 0.2074 2.3141 0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492346553.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:03 Heat of formation + Delta-G solvation = -106.062989 kcal Electronic energy + Delta-G solvation = -25519.858084 eV Core-core repulsion = 21492.976088 eV Total energy + Delta-G solvation = -4026.881997 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.66313 -40.03751 -38.17104 -36.80250 -35.72134 -34.44654 -34.01837 -33.92080 -31.63928 -31.47660 -29.82409 -27.76752 -25.99566 -24.80587 -23.25965 -22.05119 -21.27480 -20.10693 -19.30760 -18.78597 -18.04882 -17.76762 -16.91733 -16.52139 -16.28031 -15.87051 -15.82816 -15.24758 -15.00646 -14.91595 -14.84679 -14.27692 -14.22506 -13.72630 -13.64626 -13.36997 -12.88644 -12.78364 -12.57720 -12.34484 -12.09607 -11.94569 -11.90309 -11.83704 -11.71719 -11.26066 -11.23877 -11.21322 -10.88139 -10.44207 -10.37455 -10.28443 -10.08664 -9.61962 -9.55173 -9.33045 -8.63896 -8.29800 -6.14106 -4.15265 0.11768 0.42465 0.87105 1.53407 2.63067 2.72173 2.83424 3.29106 3.35877 3.39612 3.41051 3.92038 4.10824 4.17871 4.33294 4.37999 4.50908 4.52650 4.61099 4.69553 4.76465 4.80543 4.89447 4.95004 4.95544 5.15993 5.17415 5.48890 5.49756 5.56447 5.60231 5.68743 5.79192 5.96143 6.18976 6.22802 6.29157 6.65584 6.82608 6.82953 6.95374 7.48214 7.56318 8.38926 8.87202 9.45114 10.98233 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.022726 B = 0.002002 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.787902 B =13980.856866 C =14572.158133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.141 3.859 4 C -0.156 4.156 5 C -0.049 4.049 6 C -0.119 4.119 7 C 0.002 3.998 8 C -0.227 4.227 9 C 0.568 3.432 10 O -0.496 6.496 11 N -1.054 6.054 12 S 2.567 3.433 13 O -0.955 6.955 14 O -0.938 6.938 15 C -0.569 4.569 16 C -0.006 4.006 17 C -0.518 4.518 18 H 0.079 0.921 19 C 0.072 3.928 20 N -0.895 5.895 21 Si 0.870 3.130 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.262 1.262 25 C -0.056 4.056 26 C -0.213 4.213 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.135 0.865 34 H 0.429 0.571 35 H 0.137 0.863 36 H 0.127 0.873 37 H 0.033 0.967 38 H 0.031 0.969 39 H 0.266 0.734 40 H 0.133 0.867 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.943 -25.408 9.555 31.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C 0.095 3.905 4 C -0.174 4.174 5 C -0.067 4.067 6 C -0.119 4.119 7 C -0.018 4.018 8 C -0.249 4.249 9 C 0.358 3.642 10 O -0.370 6.370 11 N -0.815 5.815 12 S 2.667 3.333 13 O -0.946 6.946 14 O -0.928 6.928 15 C -0.703 4.703 16 C -0.045 4.045 17 C -0.557 4.557 18 H 0.097 0.903 19 C -0.131 4.131 20 N -0.533 5.533 21 Si 0.696 3.304 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.186 1.186 25 C -0.074 4.074 26 C -0.231 4.231 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.153 0.847 34 H 0.264 0.736 35 H 0.155 0.845 36 H 0.146 0.854 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.076 0.924 40 H 0.151 0.849 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.947 -24.845 10.204 31.236 hybrid contribution -0.678 0.594 -0.114 0.908 sum -16.624 -24.251 10.090 31.085 Atomic orbital electron populations 1.23122 0.77973 1.04260 1.01622 1.86051 1.21763 1.26968 1.88055 1.19309 0.92461 0.84226 0.94511 1.20404 0.91280 0.98898 1.06835 1.21254 1.00267 0.90536 0.94643 1.18935 0.93163 0.92903 1.06891 1.22461 1.00736 0.90164 0.88392 1.22835 1.00751 0.91387 1.09969 1.18195 0.86855 0.85118 0.74051 1.91028 1.12752 1.87434 1.45785 1.55202 1.20584 1.24794 1.80945 1.06601 0.75182 0.72203 0.79333 1.93594 1.54366 1.58490 1.88139 1.93602 1.64099 1.84025 1.51099 1.30178 1.12764 1.10369 1.17020 1.19432 0.95917 0.88604 1.00561 1.20820 1.29821 1.04506 1.00565 0.90333 1.24980 0.94675 0.98252 0.95192 1.69880 1.31699 1.29955 1.21748 0.86918 0.79630 0.82237 0.81613 1.19621 1.20759 1.18649 1.21251 0.93684 0.97461 0.94976 1.21196 1.00318 0.92134 1.09497 0.92397 0.92349 0.88013 0.84642 0.84315 0.84045 0.84727 0.73599 0.84473 0.85445 0.94870 0.95110 0.92380 0.84917 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.09 9.81 101.05 0.99 1.08 16 2 O -0.32 -2.28 10.48 -18.93 -0.20 -2.48 16 3 C 0.14 1.07 6.70 -39.00 -0.26 0.81 16 4 C -0.16 -1.14 9.97 -39.50 -0.39 -1.53 16 5 C -0.05 -0.35 9.79 -39.14 -0.38 -0.74 16 6 C -0.12 -0.94 5.87 -105.05 -0.62 -1.56 16 7 C 0.00 0.02 9.45 -37.19 -0.35 -0.33 16 8 C -0.23 -2.09 9.41 -37.52 -0.35 -2.45 16 9 C 0.57 7.50 7.47 -13.04 -0.10 7.41 16 10 O -0.50 -8.53 14.33 -11.95 -0.17 -8.70 16 11 N -1.05 -12.95 5.60 30.16 0.17 -12.78 16 12 S 2.57 44.61 5.11 -107.50 -0.55 44.06 16 13 O -0.96 -17.89 18.08 -57.54 -1.04 -18.93 16 14 O -0.94 -19.68 17.04 -64.79 -1.10 -20.78 16 15 C -0.57 -10.96 5.82 37.16 0.22 -10.74 16 16 C -0.01 -0.14 4.05 -27.88 -0.11 -0.25 16 17 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 18 H 0.08 2.35 7.99 -52.49 -0.42 1.93 16 19 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 20 N -0.89 -27.33 13.96 55.43 0.77 -26.56 16 21 Si 0.87 21.75 27.47 -169.99 -4.67 17.08 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 25 C -0.06 -0.38 9.40 -39.14 -0.37 -0.75 16 26 C -0.21 -1.39 9.01 -39.50 -0.36 -1.75 16 27 H 0.06 0.16 7.65 -51.92 -0.40 -0.24 16 28 H 0.06 0.16 7.65 -51.93 -0.40 -0.24 16 29 H 0.10 0.19 8.14 -51.92 -0.42 -0.24 16 30 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 31 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.14 1.33 7.52 -52.49 -0.39 0.93 16 33 H 0.14 0.77 6.07 -52.49 -0.32 0.46 16 34 H 0.43 3.39 8.77 -34.47 -0.30 3.08 16 35 H 0.14 2.64 7.19 -51.92 -0.37 2.27 16 36 H 0.13 2.13 8.14 -51.92 -0.42 1.71 16 37 H 0.03 0.79 7.20 -51.93 -0.37 0.41 16 38 H 0.03 0.74 7.57 -51.93 -0.39 0.35 16 39 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.13 0.64 6.16 -52.49 -0.32 0.31 16 41 H 0.13 0.57 6.27 -52.49 -0.33 0.24 16 LS Contribution 365.43 15.07 5.51 5.51 Total: -1.00 -38.51 365.43 -8.68 -47.18 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -4.88 Total: 0.29 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -2.52 Total: -23.89 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.94 Total: -39.34 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -2.51 Total: -50.89 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Atomic # 16 Polarization: 44.61 SS G_CDS: -0.55 Total: 44.06 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -38.51 -8.68 -47.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492346553.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.878 kcal (2) G-P(sol) polarization free energy of solvation -38.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds