Wall clock time and date at job start Tue Mar 31 2020 22:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35740 * 117.00115 * 2 1 4 4 C 1.39017 * 119.88620 * 180.02562 * 3 2 1 5 5 C 1.37659 * 120.11328 * 180.02562 * 4 3 2 6 6 C 1.39969 * 119.88708 * 359.97438 * 5 4 3 7 7 C 1.46996 * 120.11662 * 180.02562 * 6 5 4 8 8 C 1.34984 * 120.00100 * 179.97438 * 7 6 5 9 9 C 1.46256 * 120.00004 * 179.72772 * 8 7 6 10 10 O 1.21725 * 119.99883 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00125 * 179.97438 * 9 8 7 12 12 S 1.65606 * 119.99882 * 179.97438 * 11 9 8 13 13 O 1.42097 * 104.27221 * 181.07030 * 12 11 9 14 14 O 1.42099 * 104.27736 * 308.92818 * 12 11 9 15 15 C 1.81403 * 104.44801 * 65.00107 * 12 11 9 16 16 C 1.53001 * 109.47061 * 179.97438 * 15 12 11 17 17 C 1.50695 * 109.46795 * 180.02562 * 16 15 12 18 18 H 1.07994 * 120.00540 * 0.02562 * 17 16 15 19 19 C 1.37887 * 119.99863 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99926 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99649 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47144 * 90.00068 * 21 19 17 23 23 H 1.48503 * 109.47062 * 210.00106 * 21 19 17 24 24 H 1.48502 * 109.47080 * 329.99686 * 21 19 17 25 25 C 1.39977 * 119.77312 * 0.27331 * 6 5 4 26 26 C 1.37660 * 119.88154 * 359.47351 * 25 6 5 27 27 H 1.09008 * 109.46992 * 299.99944 * 1 2 3 28 28 H 1.08996 * 109.47396 * 60.00117 * 1 2 3 29 29 H 1.09011 * 109.47179 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.94231 * 359.97376 * 4 3 2 31 31 H 1.07998 * 120.05927 * 179.97438 * 5 4 3 32 32 H 1.08000 * 120.00335 * 359.97438 * 7 6 5 33 33 H 1.07991 * 119.99836 * 359.97438 * 8 7 6 34 34 H 0.96990 * 119.99832 * 359.97438 * 11 9 8 35 35 H 1.09003 * 109.46906 * 299.99777 * 15 12 11 36 36 H 1.09000 * 109.47298 * 59.99662 * 15 12 11 37 37 H 1.09004 * 109.46800 * 299.99755 * 16 15 12 38 38 H 1.09000 * 109.47101 * 59.99835 * 16 15 12 39 39 H 0.97000 * 119.99441 * 180.02562 * 20 19 17 40 40 H 1.07996 * 120.05870 * 179.70791 * 25 6 5 41 41 H 1.08000 * 119.94282 * 180.25359 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4336 1.2794 -0.0005 5 6 4.0635 2.5035 0.0000 6 6 3.3035 3.6789 0.0005 7 6 3.9708 4.9886 0.0005 8 6 3.2357 6.1207 0.0005 9 6 3.8996 7.4239 0.0065 10 8 5.1152 7.4875 0.0120 11 7 3.1656 8.5542 0.0060 12 16 3.9175 10.0297 0.0135 13 8 2.8496 10.9669 0.0366 14 8 4.8424 9.9463 1.0890 15 6 4.7920 10.1001 -1.5743 16 6 5.5345 11.4330 -1.6889 17 6 6.2604 11.4916 -3.0082 18 1 6.1981 10.6616 -3.6963 19 6 7.0042 12.6052 -3.3369 20 7 7.6373 12.6566 -4.4884 21 14 7.1125 14.0407 -2.1464 22 1 8.2693 13.8429 -1.2366 23 1 7.2918 15.3029 -2.9079 24 1 5.8625 14.1173 -1.3484 25 6 1.9058 3.6029 0.0063 26 6 1.2858 2.3739 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0278 0.0005 30 1 4.0191 0.3719 -0.0005 31 1 5.1421 2.5568 0.0000 32 1 5.0494 5.0452 0.0005 33 1 2.1572 6.0641 0.0001 34 1 2.1970 8.5034 0.0013 35 1 5.5070 9.2793 -1.6320 36 1 4.0732 10.0137 -2.3891 37 1 4.8191 12.2534 -1.6314 38 1 6.2532 11.5197 -0.8741 39 1 8.1608 13.4398 -4.7194 40 1 1.3150 4.5069 0.0115 41 1 0.2074 2.3141 0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492346553.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:02 Heat of formation + Delta-G solvation = -134.834663 kcal Electronic energy + Delta-G solvation = -25521.105718 eV Core-core repulsion = 21492.976088 eV Total energy + Delta-G solvation = -4028.129630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.28822 -40.96737 -38.69597 -38.28579 -37.23939 -35.95676 -35.55963 -34.67552 -33.51268 -32.12664 -30.39089 -28.16497 -27.93440 -25.57014 -23.86096 -23.22313 -22.68258 -21.01277 -20.53916 -19.49133 -19.28341 -18.87830 -18.56739 -17.32776 -17.15905 -16.74941 -16.67249 -16.42992 -16.31925 -16.07087 -15.82769 -15.53276 -15.30547 -14.84116 -14.69785 -14.24579 -13.89360 -13.84493 -13.80057 -13.38618 -13.31147 -13.25166 -13.11609 -13.02766 -12.94535 -12.64441 -12.35567 -12.30741 -12.10159 -11.94095 -11.71765 -11.69609 -11.45396 -11.17988 -10.90446 -10.85224 -10.05055 -8.86671 -8.37147 -6.43463 -1.00882 -0.55131 0.37944 0.80891 1.32866 1.33563 1.39579 1.44149 1.94060 2.29387 2.33726 2.54887 2.85882 2.96427 3.04957 3.31064 3.70329 3.77936 3.89561 3.95916 4.00817 4.13888 4.15934 4.27909 4.34730 4.41157 4.45649 4.52157 4.65541 4.76375 4.95825 5.01946 5.04339 5.06885 5.09645 5.28775 5.36158 5.45116 5.62147 5.70980 5.80542 6.15409 6.38679 6.49539 6.61911 7.20445 8.78498 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.022726 B = 0.002002 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.787902 B =13980.856866 C =14572.158133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.334 6.334 3 C 0.132 3.868 4 C -0.171 4.171 5 C -0.053 4.053 6 C -0.136 4.136 7 C 0.013 3.987 8 C -0.232 4.232 9 C 0.564 3.436 10 O -0.543 6.543 11 N -1.033 6.033 12 S 2.607 3.393 13 O -0.965 6.965 14 O -0.973 6.973 15 C -0.580 4.580 16 C -0.015 4.015 17 C -0.529 4.529 18 H 0.046 0.954 19 C 0.012 3.988 20 N -0.939 5.939 21 Si 0.928 3.072 22 H -0.264 1.264 23 H -0.271 1.271 24 H -0.245 1.245 25 C -0.054 4.054 26 C -0.216 4.216 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.117 0.883 30 H 0.142 0.858 31 H 0.149 0.851 32 H 0.130 0.870 33 H 0.176 0.824 34 H 0.452 0.548 35 H 0.131 0.869 36 H 0.149 0.851 37 H 0.042 0.958 38 H 0.029 0.971 39 H 0.270 0.730 40 H 0.158 0.842 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.602 -26.075 10.918 34.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.247 6.247 3 C 0.086 3.914 4 C -0.190 4.190 5 C -0.071 4.071 6 C -0.136 4.136 7 C -0.007 4.007 8 C -0.254 4.254 9 C 0.357 3.643 10 O -0.420 6.420 11 N -0.800 5.800 12 S 2.705 3.295 13 O -0.955 6.955 14 O -0.963 6.963 15 C -0.713 4.713 16 C -0.054 4.054 17 C -0.568 4.568 18 H 0.065 0.935 19 C -0.186 4.186 20 N -0.579 5.579 21 Si 0.750 3.250 22 H -0.189 1.189 23 H -0.196 1.196 24 H -0.168 1.168 25 C -0.072 4.072 26 C -0.234 4.234 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.135 0.865 30 H 0.160 0.840 31 H 0.166 0.834 32 H 0.148 0.852 33 H 0.193 0.807 34 H 0.292 0.708 35 H 0.149 0.851 36 H 0.167 0.833 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.079 0.921 40 H 0.175 0.825 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -18.649 -25.510 11.552 33.645 hybrid contribution 0.079 0.541 -0.580 0.797 sum -18.570 -24.968 10.972 32.995 Atomic orbital electron populations 1.23397 0.76168 1.05714 1.02562 1.86032 1.23736 1.27030 1.87902 1.19558 0.92762 0.84889 0.94141 1.20587 0.91776 0.99229 1.07371 1.21445 1.00991 0.90531 0.94162 1.18954 0.93951 0.92243 1.08477 1.22522 1.00430 0.90897 0.86870 1.22853 1.02462 0.88786 1.11285 1.18886 0.86393 0.86294 0.72752 1.91018 1.14968 1.87859 1.48162 1.54654 1.21908 1.22931 1.80482 1.05156 0.74268 0.72723 0.77374 1.93577 1.54186 1.59921 1.87802 1.93560 1.65699 1.85108 1.51967 1.30185 1.13334 1.07477 1.20266 1.19383 0.96262 0.91738 0.98051 1.21133 1.30211 1.03538 1.01962 0.93525 1.25907 0.94371 1.01369 0.96965 1.70011 1.32909 1.31167 1.23779 0.85983 0.80518 0.78852 0.79626 1.18865 1.19609 1.16831 1.21556 0.93278 0.98590 0.93733 1.21468 1.01520 0.91583 1.08875 0.91350 0.91413 0.86492 0.84028 0.83353 0.85245 0.80697 0.70791 0.85053 0.83300 0.93964 0.95261 0.92057 0.82488 0.82719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 113.37 1.11 1.19 16 2 O -0.33 -4.33 10.48 -90.64 -0.95 -5.28 16 3 C 0.13 1.81 6.70 22.64 0.15 1.96 16 4 C -0.17 -2.37 9.97 22.32 0.22 -2.15 16 5 C -0.05 -0.73 9.79 22.55 0.22 -0.51 16 6 C -0.14 -1.92 5.87 -20.14 -0.12 -2.04 16 7 C 0.01 0.21 9.45 23.82 0.23 0.43 16 8 C -0.23 -3.70 9.41 23.61 0.22 -3.48 16 9 C 0.56 14.09 7.47 86.33 0.65 14.73 16 10 O -0.54 -18.71 14.33 11.94 0.17 -18.54 16 11 N -1.03 -23.10 5.60 -176.69 -0.99 -24.09 16 12 S 2.61 86.99 5.11 -56.49 -0.29 86.70 16 13 O -0.96 -33.94 18.08 -127.65 -2.31 -36.25 16 14 O -0.97 -40.16 17.04 -120.72 -2.06 -42.22 16 15 C -0.58 -22.20 5.82 71.98 0.42 -21.79 16 16 C -0.02 -0.74 4.05 29.85 0.12 -0.61 16 17 C -0.53 -30.83 9.66 25.60 0.25 -30.58 16 18 H 0.05 2.91 7.99 -2.91 -0.02 2.89 16 19 C 0.01 0.74 5.47 84.66 0.46 1.20 16 20 N -0.94 -58.70 13.96 21.45 0.30 -58.40 16 21 Si 0.93 44.50 27.47 68.60 1.88 46.39 16 22 H -0.26 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 24 H -0.24 -10.98 6.54 99.48 0.65 -10.32 16 25 C -0.05 -0.58 9.40 22.55 0.21 -0.37 16 26 C -0.22 -2.25 9.01 22.32 0.20 -2.05 16 27 H 0.07 0.19 7.65 -2.38 -0.02 0.17 16 28 H 0.07 0.21 7.65 -2.39 -0.02 0.19 16 29 H 0.12 0.18 8.14 -2.38 -0.02 0.16 16 30 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 32 H 0.13 2.44 7.52 -2.91 -0.02 2.41 16 33 H 0.18 1.24 6.07 -2.92 -0.02 1.22 16 34 H 0.45 5.59 8.77 -96.75 -0.85 4.74 16 35 H 0.13 5.17 7.19 -2.39 -0.02 5.16 16 36 H 0.15 4.89 8.14 -2.39 -0.02 4.87 16 37 H 0.04 1.95 7.20 -2.38 -0.02 1.94 16 38 H 0.03 1.41 7.57 -2.39 -0.02 1.39 16 39 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 40 H 0.16 0.81 6.16 -2.91 -0.02 0.79 16 41 H 0.16 0.81 6.27 -2.91 -0.02 0.79 16 Total: -1.00 -84.86 365.43 0.28 -84.59 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.17 Total: 11.17 kcal Atomic # 6 Polarization: -48.40 SS G_CDS: 4.34 Total: -44.06 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -0.69 Total: -82.49 kcal Atomic # 8 Polarization: -97.14 SS G_CDS: -5.14 Total: -102.29 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.39 kcal Atomic # 16 Polarization: 86.99 SS G_CDS: -0.29 Total: 86.70 kcal Total: -84.86 0.28 -84.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492346553.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.249 kcal (2) G-P(sol) polarization free energy of solvation -84.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds