Wall clock time and date at job start Tue Mar 31 2020 22:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35907 * 117.00236 * 2 1 4 4 C 1.38898 * 119.97190 * 0.25690 * 3 2 1 5 5 C 1.38290 * 120.28940 * 180.30075 * 4 3 2 6 6 C 1.37940 * 120.23101 * 359.71840 * 5 4 3 7 7 C 1.39832 * 119.93938 * 0.02562 * 6 5 4 8 8 C 1.47209 * 120.14444 * 179.97438 * 7 6 5 9 9 C 1.34814 * 120.00061 * 0.02562 * 8 7 6 10 10 C 1.46435 * 119.99844 * 179.97438 * 9 8 7 11 11 O 1.21692 * 119.99783 * 359.97438 * 10 9 8 12 12 N 1.34769 * 119.99696 * 179.97438 * 10 9 8 13 13 S 1.65597 * 120.00069 * 179.97438 * 12 10 9 14 14 O 1.42099 * 104.28031 * 181.07329 * 13 12 10 15 15 O 1.42098 * 104.27617 * 308.93081 * 13 12 10 16 16 C 1.81403 * 104.44841 * 65.00137 * 13 12 10 17 17 C 1.52996 * 109.47097 * 180.02562 * 16 13 12 18 18 C 1.50704 * 109.46887 * 180.02562 * 17 16 13 19 19 H 1.07990 * 120.00065 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99711 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00115 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99781 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47309 * 59.99618 * 22 20 18 24 24 H 1.48505 * 109.47189 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47223 * 299.99683 * 22 20 18 26 26 C 1.38381 * 119.96963 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.46858 * 299.99820 * 1 2 3 28 28 H 1.09007 * 109.46737 * 59.99381 * 1 2 3 29 29 H 1.08992 * 109.47514 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.85674 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.88519 * 179.70089 * 5 4 3 32 32 H 1.08006 * 120.03093 * 179.97438 * 6 5 4 33 33 H 1.08000 * 120.00436 * 180.02562 * 8 7 6 34 34 H 1.08000 * 119.99502 * 359.97438 * 9 8 7 35 35 H 0.97008 * 120.00268 * 0.02562 * 12 10 9 36 36 H 1.08996 * 109.46816 * 300.00204 * 16 13 12 37 37 H 1.08995 * 109.46833 * 59.99903 * 16 13 12 38 38 H 1.08996 * 109.47345 * 299.99746 * 17 16 13 39 39 H 1.09003 * 109.47280 * 59.99840 * 17 16 13 40 40 H 0.97005 * 119.99938 * 180.02562 * 21 20 18 41 41 H 1.08002 * 120.11922 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2891 2.3755 0.0054 5 6 1.9101 3.6111 -0.0008 6 6 3.2868 3.6964 -0.0066 7 6 4.0583 2.5302 -0.0067 8 6 5.5279 2.6160 -0.0134 9 6 6.1328 3.8208 -0.0190 10 6 7.5946 3.9061 -0.0251 11 8 8.2634 2.8895 -0.0247 12 7 8.1992 5.1106 -0.0312 13 16 9.8524 5.2072 -0.0374 14 8 10.1221 6.6022 -0.0171 15 8 10.2565 4.3672 1.0351 16 6 10.3418 4.4873 -1.6290 17 6 11.8662 4.5187 -1.7557 18 6 12.2727 3.9213 -3.0782 19 1 11.5192 3.5554 -3.7598 20 6 13.6067 3.8408 -3.4174 21 7 14.5243 4.2860 -2.5870 22 14 14.1105 3.1010 -5.0569 23 1 13.5062 3.8879 -6.1618 24 1 15.5901 3.1313 -5.1799 25 1 13.6358 1.6959 -5.1327 26 6 3.4280 1.2826 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.2107 2.3158 0.0092 31 1 1.3151 4.5124 -0.0015 32 1 3.7685 4.6631 -0.0119 33 1 6.1216 1.7138 -0.0139 34 1 5.5391 4.7230 -0.0189 35 1 7.6661 5.9210 -0.0311 36 1 9.9942 3.4557 -1.6833 37 1 9.8974 5.0637 -2.4404 38 1 12.2141 5.5502 -1.7012 39 1 12.3102 3.9421 -0.9442 40 1 15.4628 4.2297 -2.8258 41 1 4.0176 0.3777 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492388801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:09 Heat of formation + Delta-G solvation = -109.433598 kcal Electronic energy + Delta-G solvation = -25493.283264 eV Core-core repulsion = 21466.255107 eV Total energy + Delta-G solvation = -4027.028157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.61024 -40.01396 -38.10352 -36.67185 -35.58657 -34.40213 -34.17720 -33.86408 -31.38642 -31.15458 -29.71489 -27.83850 -25.62345 -24.95077 -23.08716 -22.14303 -21.59979 -20.15610 -19.29875 -18.23153 -18.00975 -17.45849 -16.76318 -16.49109 -16.21342 -16.17306 -15.75023 -15.33365 -14.92562 -14.79514 -14.62778 -14.49861 -14.13092 -13.75964 -13.41642 -13.34174 -12.93285 -12.52329 -12.38227 -12.29818 -11.93223 -11.81721 -11.77144 -11.69340 -11.58374 -11.31567 -11.04666 -10.97630 -10.85416 -10.61798 -10.42983 -10.36870 -10.26862 -9.68624 -9.16468 -8.95635 -8.58839 -8.47085 -6.09578 -4.14919 0.05055 0.54280 0.97994 1.52659 2.68581 2.78336 2.87954 3.30325 3.34665 3.36948 3.42451 3.98527 4.14783 4.27414 4.39762 4.45865 4.49170 4.60934 4.65020 4.68206 4.72826 4.82943 4.96583 4.98800 5.01739 5.11396 5.25581 5.42534 5.60212 5.66083 5.75703 5.77262 5.84582 5.94015 6.20130 6.23532 6.49510 6.70623 6.89546 7.31263 7.38119 7.49779 7.83325 8.19534 8.87746 9.49332 11.01435 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015748 B = 0.002100 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.520735 B =13332.830812 C =14547.185575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.124 3.876 4 C -0.198 4.198 5 C -0.082 4.082 6 C -0.137 4.137 7 C -0.036 4.036 8 C -0.013 4.013 9 C -0.208 4.208 10 C 0.566 3.434 11 O -0.493 6.493 12 N -1.055 6.055 13 S 2.568 3.432 14 O -0.955 6.955 15 O -0.938 6.938 16 C -0.575 4.575 17 C 0.029 3.971 18 C -0.519 4.519 19 H 0.062 0.938 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.902 3.098 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.126 4.126 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.429 0.571 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.034 0.966 39 H 0.036 0.964 40 H 0.266 0.734 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.618 -2.020 5.134 32.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.079 3.921 4 C -0.217 4.217 5 C -0.100 4.100 6 C -0.155 4.155 7 C -0.037 4.037 8 C -0.032 4.032 9 C -0.230 4.230 10 C 0.356 3.644 11 O -0.367 6.367 12 N -0.815 5.815 13 S 2.668 3.332 14 O -0.946 6.946 15 O -0.928 6.928 16 C -0.710 4.710 17 C -0.010 4.010 18 C -0.559 4.559 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.729 3.271 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.144 4.144 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.162 0.838 34 H 0.156 0.844 35 H 0.263 0.737 36 H 0.150 0.850 37 H 0.139 0.861 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -30.371 -2.562 5.922 31.049 hybrid contribution -0.518 0.052 -1.426 1.518 sum -30.889 -2.510 4.496 31.315 Atomic orbital electron populations 1.23085 0.78166 1.04183 1.01377 1.86101 1.21546 1.26672 1.88684 1.18893 0.92164 0.84375 0.96695 1.21403 1.00236 0.92402 1.07648 1.20889 0.94472 0.97123 0.97531 1.21376 0.93785 0.98082 1.02243 1.18757 0.92426 0.92656 0.99838 1.22481 0.92087 0.98873 0.89790 1.22975 0.92898 0.99532 1.07581 1.18210 0.89652 0.82351 0.74232 1.91026 1.66392 1.33789 1.45461 1.55294 1.30940 1.14572 1.80731 1.06640 0.72060 0.75058 0.79445 1.93588 1.81631 1.31134 1.88203 1.93597 1.78759 1.69007 1.51440 1.30334 1.11388 1.12665 1.16609 1.18988 0.82805 0.99158 1.00026 1.20942 0.92145 1.41073 1.01712 0.92021 1.25066 0.96540 0.95356 0.97541 1.69946 1.00994 1.45860 1.36032 0.86502 0.77430 0.79740 0.83427 1.20102 1.21088 1.20038 1.20648 0.91573 0.98050 1.04141 0.92568 0.92543 0.88056 0.85282 0.85267 0.85015 0.83836 0.84394 0.73650 0.85044 0.86054 0.94756 0.94555 0.92478 0.84323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.32 -2.56 10.49 -19.45 -0.20 -2.77 16 3 C 0.12 1.03 6.68 -39.28 -0.26 0.77 16 4 C -0.20 -1.32 9.04 -39.32 -0.36 -1.67 16 5 C -0.08 -0.51 10.02 -39.67 -0.40 -0.91 16 6 C -0.14 -0.96 9.41 -39.09 -0.37 -1.33 16 7 C -0.04 -0.31 5.87 -105.08 -0.62 -0.93 16 8 C -0.01 -0.12 9.46 -37.15 -0.35 -0.47 16 9 C -0.21 -1.95 9.41 -37.50 -0.35 -2.30 16 10 C 0.57 7.66 7.48 -12.96 -0.10 7.57 16 11 O -0.49 -8.67 14.33 -11.92 -0.17 -8.85 16 12 N -1.06 -13.46 5.60 30.20 0.17 -13.29 16 13 S 2.57 46.96 5.11 -107.50 -0.55 46.41 16 14 O -0.95 -18.93 18.08 -57.54 -1.04 -19.97 16 15 O -0.94 -20.77 17.04 -64.79 -1.10 -21.87 16 16 C -0.58 -11.54 5.82 37.16 0.22 -11.32 16 17 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 18 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 19 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 22 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 C -0.13 -1.10 9.73 -38.95 -0.38 -1.48 16 27 H 0.06 0.17 7.65 -51.93 -0.40 -0.22 16 28 H 0.06 0.18 7.67 -51.93 -0.40 -0.22 16 29 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.13 0.57 6.28 -52.49 -0.33 0.24 16 31 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 32 H 0.13 0.66 6.16 -52.48 -0.32 0.33 16 33 H 0.14 1.42 7.52 -52.49 -0.39 1.02 16 34 H 0.14 0.80 6.07 -52.49 -0.32 0.48 16 35 H 0.43 3.55 8.77 -34.47 -0.30 3.25 16 36 H 0.13 2.60 7.19 -51.93 -0.37 2.22 16 37 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 38 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -38.50 369.09 -9.06 -47.56 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -4.91 Total: 0.43 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -2.52 Total: -23.73 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.91 Total: -39.31 kcal Atomic # 8 Polarization: -50.93 SS G_CDS: -2.52 Total: -53.45 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 46.96 SS G_CDS: -0.55 Total: 46.41 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -38.50 -9.06 -47.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492388801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.872 kcal (2) G-P(sol) polarization free energy of solvation -38.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds