Wall clock time and date at job start Tue Mar 31 2020 22:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47256 * 2 1 4 4 C 1.35729 * 117.00223 * 179.97438 * 3 2 1 5 5 C 1.39016 * 119.88855 * 179.97438 * 4 3 2 6 6 C 1.37667 * 120.11497 * 180.02562 * 5 4 3 7 7 C 1.39968 * 119.88512 * 0.02562 * 6 5 4 8 8 C 1.47000 * 120.11364 * 179.97438 * 7 6 5 9 9 C 1.34973 * 120.00224 * 136.34668 * 8 7 6 10 10 C 1.46258 * 119.99768 * 349.04097 * 9 8 7 11 11 O 1.21726 * 120.00292 * 353.21898 * 10 9 8 12 12 N 1.34782 * 120.00227 * 172.94333 * 10 9 8 13 13 S 1.65599 * 119.99982 * 180.27796 * 12 10 9 14 14 O 1.42103 * 104.27357 * 181.07213 * 13 12 10 15 15 O 1.42098 * 104.27873 * 308.92831 * 13 12 10 16 16 C 1.81399 * 104.45309 * 64.99841 * 13 12 10 17 17 C 1.50702 * 109.47228 * 179.97438 * 16 13 12 18 18 H 1.07993 * 119.99952 * 359.97438 * 17 16 13 19 19 C 1.37873 * 119.99671 * 180.02562 * 17 16 13 20 20 N 1.31515 * 120.00161 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99772 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46959 * 59.99806 * 21 19 17 23 23 H 1.48502 * 109.47370 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47304 * 299.99996 * 21 19 17 25 25 C 1.39970 * 119.77637 * 0.25723 * 7 6 5 26 26 C 1.37664 * 119.87987 * 359.46786 * 25 7 6 27 27 H 1.09005 * 109.47083 * 59.99866 * 1 2 3 28 28 H 1.09002 * 109.47318 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47552 * 300.00320 * 1 2 3 30 30 H 1.08999 * 109.47552 * 239.99680 * 2 1 3 31 31 H 1.08998 * 109.47162 * 119.99781 * 2 1 3 32 32 H 1.07996 * 119.94453 * 359.97438 * 5 4 3 33 33 H 1.08003 * 120.05479 * 180.02562 * 6 5 4 34 34 H 1.08000 * 120.00519 * 316.35319 * 8 7 6 35 35 H 1.07994 * 120.00650 * 169.04254 * 9 8 7 36 36 H 0.96993 * 119.99480 * 0.27708 * 12 10 9 37 37 H 1.09001 * 109.46891 * 300.00092 * 16 13 12 38 38 H 1.09001 * 109.46464 * 59.99630 * 16 13 12 39 39 H 0.97004 * 119.99620 * 180.02562 * 20 19 17 40 40 H 1.07995 * 120.06095 * 179.74261 * 25 7 6 41 41 H 1.08004 * 119.94429 * 180.28193 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3519 1.5252 0.0005 5 6 3.8808 2.8108 0.0000 6 6 5.2448 2.9966 0.0000 7 6 6.0996 1.8883 0.0000 8 6 7.5570 2.0808 -0.0005 9 6 8.3371 1.3310 0.8063 10 6 7.7295 0.5026 1.8473 11 8 6.5352 0.5819 2.0684 12 7 8.4911 -0.3526 2.5581 13 16 7.8018 -1.2955 3.7321 14 8 8.8897 -2.0328 4.2728 15 8 7.0685 -0.3785 4.5324 16 6 6.6757 -2.3932 2.8279 17 6 5.9810 -3.3114 3.8002 18 1 6.1957 -3.2419 4.8562 19 6 5.0720 -4.2409 3.3412 20 7 4.8108 -4.3259 2.0550 21 14 4.2113 -5.3796 4.5462 22 1 3.4370 -4.5726 5.5232 23 1 3.2893 -6.2782 3.8061 24 1 5.2229 -6.1930 5.2676 25 6 5.5622 0.5959 -0.0055 26 6 4.1967 0.4210 0.0003 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.2204 3.6653 -0.0012 33 1 5.6546 3.9959 0.0001 34 1 8.0035 2.8224 -0.6464 35 1 9.4100 1.3427 0.6832 36 1 9.4428 -0.4157 2.3819 37 1 5.9337 -1.7959 2.2980 38 1 7.2440 -2.9861 2.1112 39 1 4.1710 -4.9796 1.7322 40 1 6.2174 -0.2625 -0.0097 41 1 3.7808 -0.5758 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493496605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:52 Heat of formation + Delta-G solvation = -100.994176 kcal Electronic energy + Delta-G solvation = -27588.764457 eV Core-core repulsion = 23562.102260 eV Total energy + Delta-G solvation = -4026.662196 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.30129 -39.53555 -37.40204 -36.22148 -35.14886 -34.02778 -33.58443 -33.37176 -31.62193 -30.76907 -29.08085 -28.60805 -24.45311 -23.88749 -23.53610 -22.17988 -21.33679 -19.79983 -19.03385 -18.18933 -17.50049 -17.25686 -16.45089 -15.98975 -15.89984 -15.58500 -15.20930 -14.77365 -14.63301 -14.39415 -14.12645 -14.04036 -13.46450 -13.39342 -13.24171 -12.97325 -12.55084 -12.51280 -12.19344 -12.05241 -11.75433 -11.63246 -11.49676 -11.46781 -11.28111 -11.16993 -10.91655 -10.77732 -10.67461 -10.60163 -10.40211 -9.95998 -9.77366 -9.61271 -9.17273 -8.73129 -8.64644 -7.61732 -6.36503 -4.46682 0.72878 1.07113 1.64413 1.96512 3.13800 3.21673 3.23267 3.27882 3.31499 3.32468 4.01598 4.20291 4.50154 4.68506 4.76018 4.94177 4.97156 4.99000 5.05919 5.14525 5.20254 5.28116 5.32996 5.35406 5.44821 5.53240 5.69053 5.81946 5.89256 5.96040 6.00947 6.07157 6.24774 6.47934 6.58090 6.61314 6.72706 6.77451 6.93286 7.10351 7.39470 7.57507 7.70630 7.90151 8.53672 9.20245 10.75091 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.008233 B = 0.005353 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3400.069964 B = 5229.860767 C = 8064.600496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 O -0.319 6.319 4 C 0.146 3.854 5 C -0.170 4.170 6 C -0.058 4.058 7 C -0.127 4.127 8 C 0.001 3.999 9 C -0.227 4.227 10 C 0.556 3.444 11 O -0.478 6.478 12 N -1.058 6.058 13 S 2.554 3.446 14 O -0.972 6.972 15 O -0.952 6.952 16 C -0.404 4.404 17 C -0.533 4.533 18 H 0.069 0.931 19 C 0.079 3.921 20 N -0.878 5.878 21 Si 0.904 3.096 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.269 1.269 25 C 0.002 3.998 26 C -0.208 4.208 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.423 0.577 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.268 0.732 40 H 0.120 0.880 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.267 11.527 -10.437 15.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.233 6.233 4 C 0.100 3.900 5 C -0.189 4.189 6 C -0.076 4.076 7 C -0.127 4.127 8 C -0.018 4.018 9 C -0.250 4.250 10 C 0.345 3.655 11 O -0.351 6.351 12 N -0.817 5.817 13 S 2.656 3.344 14 O -0.963 6.963 15 O -0.943 6.943 16 C -0.540 4.540 17 C -0.572 4.572 18 H 0.087 0.913 19 C -0.127 4.127 20 N -0.513 5.513 21 Si 0.730 3.270 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.194 1.194 25 C -0.017 4.017 26 C -0.227 4.227 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.257 0.743 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.138 0.862 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.345 11.753 -9.473 15.099 hybrid contribution 0.127 -1.155 0.019 1.162 sum 0.472 10.598 -9.454 14.210 Atomic orbital electron populations 1.21758 0.92926 1.02863 1.03093 1.22842 0.95634 0.81715 1.02264 1.85965 1.19334 1.29707 1.88264 1.19162 0.82109 0.94138 0.94592 1.20145 0.95015 0.94461 1.09248 1.20868 0.92038 0.97699 0.96990 1.18756 0.92424 0.93581 1.07942 1.22401 0.92256 0.93592 0.93560 1.22971 1.00666 1.02522 0.98813 1.18362 0.86404 0.78875 0.81847 1.91101 1.13558 1.64591 1.65879 1.55429 1.21363 1.51516 1.53441 1.07063 0.76149 0.75666 0.75520 1.93517 1.53769 1.72641 1.76332 1.93534 1.73199 1.61907 1.65622 1.27596 1.09329 1.08472 1.08628 1.20241 1.26095 1.18645 0.92234 0.91281 1.24881 0.95570 0.96617 0.95669 1.69943 1.33433 1.34906 1.13067 0.86439 0.79574 0.80212 0.80804 1.19397 1.20669 1.19385 1.20928 0.94366 0.95732 0.90637 1.21189 0.94257 0.98358 1.08917 0.91866 0.90330 0.91596 0.91909 0.91160 0.85577 0.85588 0.84523 0.84415 0.74277 0.88425 0.89798 0.92213 0.86249 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 37.16 0.38 -1.18 16 2 C 0.05 0.67 5.45 37.16 0.20 0.87 16 3 O -0.32 -4.87 10.12 -18.89 -0.19 -5.06 16 4 C 0.15 2.32 6.70 -39.00 -0.26 2.06 16 5 C -0.17 -2.40 9.97 -39.50 -0.39 -2.79 16 6 C -0.06 -0.75 9.79 -39.14 -0.38 -1.13 16 7 C -0.13 -1.78 4.53 -105.05 -0.48 -2.25 16 8 C 0.00 0.01 9.80 -37.19 -0.36 -0.35 16 9 C -0.23 -2.60 9.91 -37.52 -0.37 -2.97 16 10 C 0.56 9.13 6.52 -13.04 -0.09 9.04 16 11 O -0.48 -9.71 10.25 -11.96 -0.12 -9.84 16 12 N -1.06 -17.01 5.60 30.17 0.17 -16.84 16 13 S 2.55 55.78 5.03 -107.50 -0.54 55.24 16 14 O -0.97 -22.49 18.08 -57.54 -1.04 -23.53 16 15 O -0.95 -24.10 17.04 -64.79 -1.10 -25.20 16 16 C -0.40 -9.88 5.64 36.01 0.20 -9.68 16 17 C -0.53 -14.76 9.13 -34.44 -0.31 -15.07 16 18 H 0.07 1.88 7.71 -52.49 -0.40 1.48 16 19 C 0.08 2.16 5.46 -17.82 -0.10 2.06 16 20 N -0.88 -24.22 13.29 55.43 0.74 -23.49 16 21 Si 0.90 20.88 29.54 -169.99 -5.02 15.85 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 25 C 0.00 0.03 6.59 -39.14 -0.26 -0.23 16 26 C -0.21 -3.50 9.01 -39.50 -0.36 -3.86 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.77 7.65 -51.93 -0.40 0.37 16 31 H 0.07 1.03 7.65 -51.93 -0.40 0.64 16 32 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 34 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.42 4.91 8.77 -34.47 -0.30 4.61 16 37 H 0.10 2.47 7.19 -51.92 -0.37 2.10 16 38 H 0.08 1.98 8.14 -51.92 -0.42 1.55 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.12 1.96 7.03 -52.49 -0.37 1.59 16 41 H 0.13 2.22 6.27 -52.48 -0.33 1.89 16 LS Contribution 364.43 15.07 5.49 5.49 Total: -1.00 -36.32 364.43 -9.29 -45.60 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.09 Total: 7.24 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: -2.57 Total: -25.48 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.91 Total: -40.33 kcal Atomic # 8 Polarization: -61.17 SS G_CDS: -2.46 Total: -63.63 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 55.78 SS G_CDS: -0.54 Total: 55.24 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.32 -9.29 -45.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493496605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.390 kcal (2) G-P(sol) polarization free energy of solvation -36.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds