Wall clock time and date at job start Tue Mar 31 2020 22:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 115.54900 * 2 1 4 4 C 1.52994 * 117.49819 * 214.28450 * 2 1 3 5 5 C 1.52997 * 117.49345 * 145.66285 * 2 1 3 6 6 H 1.09001 * 117.49676 * 215.00078 * 5 2 1 7 7 C 1.50700 * 117.50345 * 0.02562 * 5 2 1 8 8 C 1.35156 * 125.47841 * 239.98403 * 7 5 2 9 9 C 1.40321 * 107.19989 * 179.77326 * 8 7 5 10 10 C 1.37943 * 106.52840 * 0.40974 * 9 8 7 11 11 C 1.41616 * 126.10050 * 179.85059 * 10 9 8 12 12 C 1.35621 * 119.99880 * 218.45847 * 11 10 9 13 13 C 1.41567 * 120.00039 * 10.01231 * 12 11 10 14 14 O 1.21769 * 119.99748 * 6.47726 * 13 12 11 15 15 N 1.34775 * 119.99541 * 186.47877 * 13 12 11 16 16 S 1.65611 * 119.99484 * 179.97438 * 15 13 12 17 17 O 1.42101 * 104.27438 * 181.06976 * 16 15 13 18 18 O 1.42097 * 104.27778 * 308.92995 * 16 15 13 19 19 C 1.81401 * 104.44739 * 65.00059 * 16 15 13 20 20 C 1.50697 * 109.46856 * 180.02562 * 19 16 15 21 21 H 1.08003 * 120.00247 * 359.97438 * 20 19 16 22 22 C 1.37882 * 119.99870 * 180.02562 * 20 19 16 23 23 N 1.31512 * 119.99765 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99993 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47043 * 90.00225 * 24 22 20 26 26 H 1.48499 * 109.46955 * 210.00314 * 24 22 20 27 27 H 1.48501 * 109.46928 * 330.00362 * 24 22 20 28 28 O 1.34016 * 125.48333 * 60.01868 * 7 5 2 29 29 H 1.08999 * 109.47269 * 274.33671 * 1 2 3 30 30 H 1.09002 * 109.46839 * 34.33468 * 1 2 3 31 31 H 1.08994 * 109.47289 * 154.33661 * 1 2 3 32 32 H 1.08999 * 117.50397 * 145.02170 * 4 2 1 33 33 H 1.09005 * 117.49829 * 0.02562 * 4 2 1 34 34 H 1.07995 * 126.40092 * 0.02604 * 8 7 5 35 35 H 1.08006 * 126.73179 * 180.25831 * 9 8 7 36 36 H 1.07991 * 120.00099 * 38.45595 * 11 10 9 37 37 H 1.08000 * 120.00013 * 190.01648 * 12 11 10 38 38 H 0.96991 * 120.00715 * 0.02562 * 15 13 12 39 39 H 1.09000 * 109.47151 * 299.99688 * 19 16 15 40 40 H 1.08996 * 109.47276 * 59.99768 * 19 16 15 41 41 H 0.97001 * 119.99926 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1213 -0.7645 5 6 2.2364 -1.1207 0.7655 6 1 3.1713 -0.8746 1.2690 7 6 1.3719 -2.1403 1.4613 8 6 1.3726 -2.3944 2.7888 9 6 0.4243 -3.4028 3.0187 10 6 -0.1115 -3.7254 1.7892 11 6 -1.1081 -4.7010 1.5433 12 6 -1.0370 -5.4784 0.4343 13 6 0.1319 -5.4672 -0.3642 14 8 1.1160 -4.8527 0.0056 15 7 0.1554 -6.1367 -1.5337 16 16 1.5226 -6.1231 -2.4682 17 8 1.1749 -6.8955 -3.6091 18 8 1.8514 -4.7459 -2.5882 19 6 2.7634 -6.9889 -1.4674 20 6 4.0680 -7.0413 -2.2199 21 1 4.1431 -6.5984 -3.2021 22 6 5.1655 -7.6555 -1.6549 23 7 6.3039 -7.7017 -2.3118 24 14 5.0355 -8.4221 0.0436 25 1 4.6181 -9.8414 -0.0845 26 1 6.3557 -8.3535 0.7201 27 1 4.0292 -7.6807 0.8455 28 8 0.4794 -2.9414 0.8633 29 1 -0.3634 0.0777 1.0247 30 1 -0.3633 0.8486 -0.5796 31 1 -0.3633 -0.9262 -0.4450 32 1 3.1715 -0.8758 -1.2679 33 1 1.6112 -1.8588 -1.2678 34 1 1.9852 -1.9088 3.5339 35 1 0.1665 -3.8421 3.9711 36 1 -1.9247 -4.8259 2.2388 37 1 -1.8722 -6.1060 0.1603 38 1 -0.6286 -6.6258 -1.8285 39 1 2.9078 -6.4565 -0.5273 40 1 2.4211 -8.0030 -1.2618 41 1 7.0759 -8.1341 -1.9144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493804819.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:36 Heat of formation + Delta-G solvation = -44.562437 kcal Electronic energy + Delta-G solvation = -28166.122034 eV Core-core repulsion = 24141.906902 eV Total energy + Delta-G solvation = -4024.215133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.45033 -39.95308 -37.67276 -36.32057 -35.22833 -34.25595 -34.06695 -33.23067 -32.81455 -29.78732 -29.35129 -28.19685 -25.06590 -23.06942 -22.54290 -21.78687 -20.95300 -20.14373 -19.61443 -19.10550 -17.96600 -17.58889 -16.60649 -16.17973 -15.97620 -15.78996 -15.41987 -14.87435 -14.75605 -14.56379 -14.23090 -14.05711 -13.43120 -13.21088 -13.08190 -12.74657 -12.70390 -12.54885 -12.48343 -12.25313 -11.92884 -11.69827 -11.64561 -11.38256 -11.35325 -11.24200 -10.84847 -10.67422 -10.56537 -10.30774 -10.13637 -10.04001 -9.94217 -9.84742 -9.57256 -9.36618 -8.81338 -7.78004 -6.30220 -4.38889 0.38798 0.94913 2.03960 2.64872 3.01041 3.14872 3.17407 3.25094 3.28355 3.29745 3.92644 4.24602 4.41427 4.49388 4.60691 4.71797 4.74819 4.89609 4.95393 5.04129 5.14617 5.17653 5.22803 5.25719 5.31955 5.60804 5.68569 5.72147 5.73060 5.85585 5.92652 6.02321 6.04371 6.19518 6.21854 6.26804 6.37420 6.41573 6.59468 6.97587 7.20277 7.32583 7.79063 8.01248 8.60203 9.25093 10.80732 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011275 B = 0.004433 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.744426 B = 6315.227558 C = 6520.527607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.145 4.145 3 H 0.110 0.890 4 C -0.153 4.153 5 C -0.092 4.092 6 H 0.133 0.867 7 C 0.068 3.932 8 C -0.225 4.225 9 C -0.164 4.164 10 C -0.017 4.017 11 C 0.023 3.977 12 C -0.219 4.219 13 C 0.555 3.445 14 O -0.476 6.476 15 N -1.061 6.061 16 S 2.581 3.419 17 O -0.965 6.965 18 O -0.942 6.942 19 C -0.459 4.459 20 C -0.531 4.531 21 H 0.086 0.914 22 C 0.092 3.908 23 N -0.880 5.880 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.261 1.261 28 O -0.125 6.125 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.144 0.856 38 H 0.425 0.575 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.767 9.662 11.409 22.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.163 4.163 3 H 0.128 0.872 4 C -0.190 4.190 5 C -0.110 4.110 6 H 0.151 0.849 7 C 0.015 3.985 8 C -0.244 4.244 9 C -0.183 4.183 10 C -0.066 4.066 11 C 0.004 3.996 12 C -0.242 4.242 13 C 0.345 3.655 14 O -0.349 6.349 15 N -0.821 5.821 16 S 2.681 3.319 17 O -0.955 6.955 18 O -0.932 6.932 19 C -0.595 4.595 20 C -0.570 4.570 21 H 0.104 0.896 22 C -0.115 4.115 23 N -0.515 5.515 24 Si 0.705 3.295 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.186 1.186 28 O -0.019 6.019 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.130 0.870 34 H 0.164 0.836 35 H 0.166 0.834 36 H 0.175 0.825 37 H 0.162 0.838 38 H 0.259 0.741 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.904 10.461 10.491 21.736 hybrid contribution -0.093 -1.330 1.444 1.965 sum -15.998 9.132 11.935 21.949 Atomic orbital electron populations 1.21371 0.92790 1.02279 1.01616 1.22501 0.95688 0.94136 1.03955 0.87151 1.23261 1.03255 1.00469 0.91986 1.20668 0.98609 0.96352 0.95356 0.84946 1.21523 0.91973 0.93785 0.91250 1.21272 1.04730 1.03032 0.95370 1.22114 0.99762 0.99226 0.97205 1.19493 1.00767 0.99220 0.87160 1.20688 0.94019 0.89431 0.95486 1.22275 0.98940 1.04798 0.98158 1.17045 0.89981 0.77875 0.80592 1.91080 1.35841 1.38658 1.69342 1.55403 1.34461 1.59171 1.33065 1.06163 0.74521 0.76052 0.75150 1.93537 1.82318 1.73021 1.46651 1.93539 1.82578 1.31925 1.85136 1.28101 1.12152 1.08125 1.11101 1.20026 0.91410 1.41171 1.04377 0.89567 1.24836 0.94504 0.94451 0.97732 1.69861 1.01390 1.42150 1.38133 0.86756 0.78388 0.80064 0.84249 1.19603 1.20507 1.18581 1.84213 1.42269 1.39583 1.35866 0.92492 0.92101 0.92068 0.87850 0.87003 0.83618 0.83356 0.82493 0.83842 0.74135 0.88499 0.90363 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 9.15 37.16 0.34 -1.04 16 2 C -0.14 -1.68 6.41 -90.62 -0.58 -2.26 16 3 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 4 C -0.15 -2.25 9.81 -26.73 -0.26 -2.52 16 5 C -0.09 -1.24 6.23 -91.77 -0.57 -1.82 16 6 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 7 C 0.07 1.03 5.89 -35.40 -0.21 0.82 16 8 C -0.23 -3.02 10.76 -39.90 -0.43 -3.45 16 9 C -0.16 -2.06 10.90 -38.91 -0.42 -2.48 16 10 C -0.02 -0.23 5.34 -38.40 -0.21 -0.43 16 11 C 0.02 0.24 9.95 -39.23 -0.39 -0.15 16 12 C -0.22 -2.40 9.85 -39.25 -0.39 -2.79 16 13 C 0.56 8.90 7.08 -14.99 -0.11 8.79 16 14 O -0.48 -9.53 10.54 -25.59 -0.27 -9.80 16 15 N -1.06 -16.48 5.59 29.08 0.16 -16.31 16 16 S 2.58 55.42 5.03 -107.50 -0.54 54.88 16 17 O -0.96 -22.13 18.08 -57.54 -1.04 -23.17 16 18 O -0.94 -23.02 17.04 -64.78 -1.10 -24.12 16 19 C -0.46 -10.98 4.71 36.00 0.17 -10.81 16 20 C -0.53 -15.34 9.68 -34.44 -0.33 -15.67 16 21 H 0.09 2.66 7.96 -52.48 -0.42 2.24 16 22 C 0.09 2.65 5.47 -17.82 -0.10 2.55 16 23 N -0.88 -26.62 13.96 55.43 0.77 -25.85 16 24 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 28 O -0.13 -2.06 6.73 -20.12 -0.14 -2.19 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.79 7.26 -51.93 -0.38 0.41 16 32 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.11 2.00 7.85 -51.93 -0.41 1.59 16 34 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 35 H 0.15 1.40 8.06 -52.48 -0.42 0.98 16 36 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.42 4.63 8.75 -34.47 -0.30 4.33 16 39 H 0.10 2.33 6.24 -51.92 -0.32 2.01 16 40 H 0.08 1.67 7.57 -51.93 -0.39 1.28 16 41 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 363.29 15.07 5.47 5.47 Total: -1.00 -38.29 363.29 -10.03 -48.31 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.19 Total: 7.39 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: -3.49 Total: -31.25 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.94 Total: -42.16 kcal Atomic # 8 Polarization: -56.74 SS G_CDS: -2.55 Total: -59.28 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Atomic # 16 Polarization: 55.42 SS G_CDS: -0.54 Total: 54.88 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.29 -10.03 -48.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493804819.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.752 kcal (2) G-P(sol) polarization free energy of solvation -38.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds