Wall clock time and date at job start Tue Mar 31 2020 22:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34752 * 116.99850 * 2 1 4 4 O 1.21498 * 120.00185 * 359.97438 * 3 2 1 5 5 C 1.47473 * 119.99783 * 180.02562 * 3 2 1 6 6 C 1.39794 * 120.08904 * 180.02562 * 5 3 2 7 7 C 1.37679 * 119.90398 * 180.29757 * 6 5 3 8 8 C 1.39021 * 120.09068 * 359.43972 * 7 6 5 9 9 O 1.35694 * 119.90499 * 180.28089 * 8 7 6 10 10 C 1.42899 * 117.00093 * 0.27444 * 9 8 7 11 11 C 1.53003 * 109.47265 * 179.97438 * 10 9 8 12 12 N 1.46503 * 109.47040 * 64.99922 * 11 10 9 13 13 C 1.34778 * 119.99938 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00004 * 0.02562 * 13 12 11 15 15 C 1.50694 * 119.99874 * 180.02562 * 13 12 11 16 16 S 1.81001 * 109.47203 * 180.02562 * 15 13 12 17 17 C 1.76197 * 100.00117 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00421 * 359.97438 * 17 16 15 19 19 C 1.38798 * 120.00237 * 180.02562 * 17 16 15 20 20 N 1.31626 * 120.00263 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99810 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47301 * 89.99811 * 21 19 17 23 23 H 1.48498 * 109.46946 * 210.00425 * 21 19 17 24 24 H 1.48503 * 109.47041 * 329.99905 * 21 19 17 25 25 C 1.39012 * 120.18607 * 0.55640 * 8 7 6 26 26 C 1.37681 * 120.09185 * 359.72844 * 25 8 7 27 27 H 1.08998 * 109.46690 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47171 * 300.00282 * 1 2 3 29 29 H 1.09001 * 109.46834 * 60.00652 * 1 2 3 30 30 H 1.08002 * 120.04587 * 0.02562 * 6 5 3 31 31 H 1.07998 * 119.95594 * 179.72119 * 7 6 5 32 32 H 1.09000 * 109.47555 * 299.99716 * 10 9 8 33 33 H 1.09000 * 109.46918 * 60.00321 * 10 9 8 34 34 H 1.09000 * 109.47167 * 185.00028 * 11 10 9 35 35 H 1.09001 * 109.46952 * 305.00510 * 11 10 9 36 36 H 0.96998 * 119.99576 * 0.02562 * 12 11 10 37 37 H 1.09001 * 109.47610 * 300.00580 * 15 13 12 38 38 H 1.09002 * 109.47638 * 60.00182 * 15 13 12 39 39 H 0.97005 * 119.99954 * 180.02562 * 20 19 17 40 40 H 1.08000 * 119.95324 * 179.69751 * 25 8 7 41 41 H 1.08005 * 120.04549 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5365 1.2778 -0.0006 6 6 4.1731 2.5224 0.0000 7 6 5.5482 2.5900 -0.0068 8 6 6.3035 1.4229 -0.0023 9 8 7.6585 1.4939 -0.0032 10 6 8.2397 2.7994 -0.0027 11 6 9.7650 2.6786 -0.0032 12 7 10.2054 2.0588 -1.2555 13 6 11.5181 1.8511 -1.4794 14 8 12.3347 2.1768 -0.6440 15 6 11.9710 1.2140 -2.7678 16 16 13.7754 1.0710 -2.7684 17 6 14.0221 0.3180 -4.3421 18 1 13.1741 0.0913 -4.9713 19 6 15.3063 0.0150 -4.7728 20 7 15.4906 -0.5480 -5.9483 21 14 16.7732 0.4063 -3.6844 22 1 17.0614 -0.7554 -2.8055 23 1 17.9578 0.6907 -4.5335 24 1 16.4664 1.5950 -2.8488 25 6 5.6744 0.1832 -0.0028 26 6 4.2997 0.1067 -0.0019 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 3.5870 3.4296 0.0012 31 1 6.0408 3.5511 -0.0109 32 1 7.9176 3.3410 -0.8921 33 1 7.9188 3.3396 0.8879 34 1 10.2080 3.6705 0.0867 35 1 10.0809 2.0618 0.8381 36 1 9.5522 1.7986 -1.9237 37 1 11.5283 0.2221 -2.8581 38 1 11.6549 1.8308 -3.6090 39 1 16.3882 -0.7600 -6.2491 40 1 6.2648 -0.7211 -0.0042 41 1 3.8117 -0.8568 -0.0027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000518699283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:34 Heat of formation + Delta-G solvation = -134.299390 kcal Electronic energy + Delta-G solvation = -24754.435540 eV Core-core repulsion = 20726.329121 eV Total energy + Delta-G solvation = -4028.106419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.12563 -40.41544 -39.28053 -37.93713 -36.78058 -34.84286 -32.44785 -31.79262 -31.45996 -30.46138 -28.51924 -27.98254 -25.63007 -24.43000 -23.97510 -22.25992 -21.30947 -20.63463 -18.97105 -18.33647 -17.91283 -17.42817 -16.86417 -16.75457 -16.55784 -16.10114 -15.54282 -15.32642 -15.14681 -14.94994 -14.59648 -14.07167 -13.99513 -13.88897 -13.79866 -13.48083 -13.16225 -13.05520 -12.85822 -12.80057 -12.55598 -12.22795 -11.95837 -11.53955 -11.32606 -11.27220 -11.26313 -11.01580 -10.99807 -10.62052 -9.87010 -9.64667 -9.59191 -9.09815 -9.00188 -8.84605 -8.51663 -6.93086 -6.29638 -4.01647 0.25657 0.79643 2.08639 2.24106 2.54153 2.73293 2.92703 3.25165 3.27765 3.33113 3.49630 3.62700 4.13206 4.24570 4.28582 4.32348 4.43207 4.54566 4.62058 4.65145 4.72262 4.72901 4.75990 4.85643 4.98038 5.05193 5.09441 5.22062 5.33504 5.45064 5.56513 5.58003 5.70136 5.75108 5.77596 5.93145 6.00043 6.07557 6.39907 6.79096 7.29882 7.52346 7.93323 8.40920 8.42364 9.16475 10.79548 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.024895 B = 0.001611 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.452634 B =17379.989199 C =18132.433228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.513 3.487 4 O -0.512 6.512 5 C -0.174 4.174 6 C -0.010 4.010 7 C -0.224 4.224 8 C 0.173 3.827 9 O -0.302 6.302 10 C 0.044 3.956 11 C 0.124 3.876 12 N -0.735 5.735 13 C 0.532 3.468 14 O -0.520 6.520 15 C -0.124 4.124 16 S -0.142 6.142 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.165 4.165 26 C -0.020 4.020 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.402 0.598 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.271 0.729 40 H 0.143 0.857 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.127 4.145 13.678 32.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.359 3.641 4 O -0.401 6.401 5 C -0.176 4.176 6 C -0.028 4.028 7 C -0.243 4.243 8 C 0.126 3.874 9 O -0.215 6.215 10 C -0.031 4.031 11 C 0.000 4.000 12 N -0.391 5.391 13 C 0.318 3.682 14 O -0.394 6.394 15 C -0.275 4.275 16 S 0.085 5.915 17 C -0.670 4.670 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.516 5.516 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.183 4.183 26 C -0.038 4.038 27 H 0.122 0.878 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.158 0.842 31 H 0.157 0.843 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.237 0.763 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.161 0.839 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -27.708 4.758 14.946 31.840 hybrid contribution -0.865 -0.202 -1.098 1.413 sum -28.574 4.556 13.848 32.078 Atomic orbital electron populations 1.23296 0.75793 1.03890 1.02690 1.86545 1.23707 1.32652 1.84393 1.21102 0.89061 0.81424 0.72485 1.90840 1.66869 1.36027 1.46414 1.18957 0.89051 0.94939 1.14641 1.21030 0.93703 0.96895 0.91197 1.21241 0.94336 0.98078 1.10606 1.19404 0.82599 0.94217 0.91179 1.86148 1.16945 1.31305 1.87052 1.23281 0.93687 0.83135 1.03041 1.21342 0.89995 1.00104 0.88539 1.45909 1.07933 1.64954 1.20287 1.20288 0.81556 0.77921 0.88425 1.90706 1.52455 1.49878 1.46382 1.23274 1.03376 1.03712 0.97114 1.84779 0.98332 1.81345 1.27082 1.22319 0.97384 1.45851 1.01428 0.89366 1.24711 0.98443 0.93387 0.94734 1.69938 1.22979 1.40195 1.18537 0.86732 0.82377 0.81398 0.81324 1.19198 1.19934 1.15944 1.20497 0.94113 0.96313 1.07419 1.21279 0.92623 0.98215 0.91658 0.87849 0.91793 0.91748 0.84202 0.84255 0.90588 0.89817 0.89068 0.90197 0.76327 0.88392 0.88421 0.91935 0.83897 0.83673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.57 101.05 1.07 1.25 16 2 O -0.36 -2.79 9.81 -40.63 -0.40 -3.19 16 3 C 0.51 4.82 7.89 34.49 0.27 5.09 16 4 O -0.51 -5.98 16.13 -19.26 -0.31 -6.29 16 5 C -0.17 -1.44 5.87 -104.98 -0.62 -2.06 16 6 C -0.01 -0.08 9.59 -39.20 -0.38 -0.45 16 7 C -0.22 -1.52 9.01 -39.50 -0.36 -1.87 16 8 C 0.17 1.35 6.70 -39.00 -0.26 1.09 16 9 O -0.30 -2.51 10.07 -18.79 -0.19 -2.70 16 10 C 0.04 0.27 4.87 37.16 0.18 0.45 16 11 C 0.12 1.15 6.06 -4.04 -0.02 1.13 16 12 N -0.74 -8.67 5.50 -60.29 -0.33 -9.00 16 13 C 0.53 9.07 7.85 -10.99 -0.09 8.98 16 14 O -0.52 -10.82 15.86 5.55 0.09 -10.73 16 15 C -0.12 -2.35 6.16 36.00 0.22 -2.13 16 16 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 17 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 18 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 19 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 20 N -0.88 -26.43 13.97 55.49 0.78 -25.66 16 21 Si 0.86 21.65 27.74 -169.99 -4.71 16.94 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 25 C -0.16 -1.22 9.97 -39.50 -0.39 -1.61 16 26 C -0.02 -0.14 9.61 -39.21 -0.38 -0.51 16 27 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.14 0.97 7.64 -52.49 -0.40 0.57 16 31 H 0.14 0.65 6.28 -52.49 -0.33 0.32 16 32 H 0.08 0.37 7.64 -51.93 -0.40 -0.02 16 33 H 0.08 0.36 7.66 -51.93 -0.40 -0.04 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.40 3.83 8.47 -40.82 -0.35 3.49 16 37 H 0.10 1.74 8.14 -51.91 -0.42 1.31 16 38 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 39 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.15 0.77 7.60 -52.48 -0.40 0.37 16 LS Contribution 374.92 15.07 5.65 5.65 Total: -1.00 -36.39 374.92 -7.19 -43.58 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.23 Total: -0.46 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -0.53 Total: -2.59 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.44 Total: -34.66 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.81 Total: -22.91 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.94 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.39 -7.19 -43.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518699283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.723 kcal (2) G-P(sol) polarization free energy of solvation -36.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds