Wall clock time and date at job start Tue Mar 31 2020 22:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34752 * 116.99850 * 2 1 4 4 O 1.21498 * 120.00185 * 359.97438 * 3 2 1 5 5 C 1.47473 * 119.99783 * 180.02562 * 3 2 1 6 6 C 1.39794 * 120.08904 * 180.02562 * 5 3 2 7 7 C 1.37679 * 119.90398 * 180.29757 * 6 5 3 8 8 C 1.39021 * 120.09068 * 359.43972 * 7 6 5 9 9 O 1.35694 * 119.90499 * 180.28089 * 8 7 6 10 10 C 1.42899 * 117.00093 * 0.27444 * 9 8 7 11 11 C 1.53003 * 109.47265 * 179.97438 * 10 9 8 12 12 N 1.46503 * 109.47040 * 64.99922 * 11 10 9 13 13 C 1.34778 * 119.99938 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00004 * 0.02562 * 13 12 11 15 15 C 1.50694 * 119.99874 * 180.02562 * 13 12 11 16 16 S 1.81001 * 109.47203 * 180.02562 * 15 13 12 17 17 C 1.76197 * 100.00117 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00421 * 359.97438 * 17 16 15 19 19 C 1.38798 * 120.00237 * 180.02562 * 17 16 15 20 20 N 1.31626 * 120.00263 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99810 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47301 * 89.99811 * 21 19 17 23 23 H 1.48498 * 109.46946 * 210.00425 * 21 19 17 24 24 H 1.48503 * 109.47041 * 329.99905 * 21 19 17 25 25 C 1.39012 * 120.18607 * 0.55640 * 8 7 6 26 26 C 1.37681 * 120.09185 * 359.72844 * 25 8 7 27 27 H 1.08998 * 109.46690 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47171 * 300.00282 * 1 2 3 29 29 H 1.09001 * 109.46834 * 60.00652 * 1 2 3 30 30 H 1.08002 * 120.04587 * 0.02562 * 6 5 3 31 31 H 1.07998 * 119.95594 * 179.72119 * 7 6 5 32 32 H 1.09000 * 109.47555 * 299.99716 * 10 9 8 33 33 H 1.09000 * 109.46918 * 60.00321 * 10 9 8 34 34 H 1.09000 * 109.47167 * 185.00028 * 11 10 9 35 35 H 1.09001 * 109.46952 * 305.00510 * 11 10 9 36 36 H 0.96998 * 119.99576 * 0.02562 * 12 11 10 37 37 H 1.09001 * 109.47610 * 300.00580 * 15 13 12 38 38 H 1.09002 * 109.47638 * 60.00182 * 15 13 12 39 39 H 0.97005 * 119.99954 * 180.02562 * 20 19 17 40 40 H 1.08000 * 119.95324 * 179.69751 * 25 8 7 41 41 H 1.08005 * 120.04549 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5365 1.2778 -0.0006 6 6 4.1731 2.5224 0.0000 7 6 5.5482 2.5900 -0.0068 8 6 6.3035 1.4229 -0.0023 9 8 7.6585 1.4939 -0.0032 10 6 8.2397 2.7994 -0.0027 11 6 9.7650 2.6786 -0.0032 12 7 10.2054 2.0588 -1.2555 13 6 11.5181 1.8511 -1.4794 14 8 12.3347 2.1768 -0.6440 15 6 11.9710 1.2140 -2.7678 16 16 13.7754 1.0710 -2.7684 17 6 14.0221 0.3180 -4.3421 18 1 13.1741 0.0913 -4.9713 19 6 15.3063 0.0150 -4.7728 20 7 15.4906 -0.5480 -5.9483 21 14 16.7732 0.4063 -3.6844 22 1 17.0614 -0.7554 -2.8055 23 1 17.9578 0.6907 -4.5335 24 1 16.4664 1.5950 -2.8488 25 6 5.6744 0.1832 -0.0028 26 6 4.2997 0.1067 -0.0019 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 3.5870 3.4296 0.0012 31 1 6.0408 3.5511 -0.0109 32 1 7.9176 3.3410 -0.8921 33 1 7.9188 3.3396 0.8879 34 1 10.2080 3.6705 0.0867 35 1 10.0809 2.0618 0.8381 36 1 9.5522 1.7986 -1.9237 37 1 11.5283 0.2221 -2.8581 38 1 11.6549 1.8308 -3.6090 39 1 16.3882 -0.7600 -6.2491 40 1 6.2648 -0.7211 -0.0042 41 1 3.8117 -0.8568 -0.0027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000518699283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:33 Heat of formation + Delta-G solvation = -159.232572 kcal Electronic energy + Delta-G solvation = -24755.516724 eV Core-core repulsion = 20726.329121 eV Total energy + Delta-G solvation = -4029.187603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73543 -41.07881 -40.48743 -38.54490 -37.45758 -35.89634 -34.66446 -32.48202 -32.13657 -31.40098 -29.56654 -28.46504 -27.83913 -25.08882 -24.56465 -22.89164 -21.95833 -21.83292 -19.91204 -19.50927 -18.92877 -18.07862 -17.94973 -17.58934 -17.39644 -17.07935 -16.89412 -16.50548 -16.39781 -15.72189 -15.59106 -15.21002 -14.93195 -14.72554 -14.64446 -14.55516 -14.42989 -14.08247 -13.63939 -13.54782 -13.33413 -13.29941 -13.01924 -13.00111 -12.84433 -12.58803 -12.06726 -11.86846 -11.84079 -11.83544 -11.70070 -11.16321 -11.01477 -10.53007 -10.17156 -10.15897 -9.41267 -8.98585 -8.50711 -6.21577 -0.34043 0.27621 1.00174 1.32612 1.44136 1.47780 1.56268 1.57717 1.69740 2.00185 2.23757 2.27981 2.69686 2.72786 2.87649 3.57977 3.69113 3.75079 3.87225 3.93660 4.07781 4.09914 4.24120 4.29443 4.29571 4.32818 4.35868 4.46052 4.48897 4.66754 4.70496 4.80378 4.94551 5.02976 5.15176 5.24918 5.33147 5.36668 5.55418 5.71353 6.12210 6.26026 6.43626 6.64433 6.94469 7.18047 8.61633 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.024895 B = 0.001611 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.452634 B =17379.989199 C =18132.433228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.513 3.487 4 O -0.543 6.543 5 C -0.191 4.191 6 C -0.017 4.017 7 C -0.218 4.218 8 C 0.167 3.833 9 O -0.317 6.317 10 C 0.047 3.953 11 C 0.121 3.879 12 N -0.712 5.712 13 C 0.536 3.464 14 O -0.562 6.562 15 C -0.113 4.113 16 S -0.175 6.175 17 C -0.531 4.531 18 H 0.062 0.938 19 C 0.046 3.954 20 N -0.917 5.917 21 Si 0.915 3.085 22 H -0.263 1.263 23 H -0.259 1.259 24 H -0.236 1.236 25 C -0.173 4.173 26 C -0.015 4.015 27 H 0.133 0.867 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.142 0.858 31 H 0.164 0.836 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.416 0.584 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.277 0.723 40 H 0.150 0.850 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.063 4.738 14.752 33.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.275 6.275 3 C 0.360 3.640 4 O -0.435 6.435 5 C -0.192 4.192 6 C -0.035 4.035 7 C -0.237 4.237 8 C 0.120 3.880 9 O -0.230 6.230 10 C -0.028 4.028 11 C -0.002 4.002 12 N -0.366 5.366 13 C 0.322 3.678 14 O -0.440 6.440 15 C -0.264 4.264 16 S 0.052 5.948 17 C -0.678 4.678 18 H 0.080 0.920 19 C -0.160 4.160 20 N -0.555 5.555 21 Si 0.737 3.263 22 H -0.187 1.187 23 H -0.184 1.184 24 H -0.160 1.160 25 C -0.192 4.192 26 C -0.033 4.033 27 H 0.151 0.849 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.160 0.840 31 H 0.181 0.819 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.253 0.747 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.086 0.914 40 H 0.168 0.832 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -28.704 5.337 16.010 33.297 hybrid contribution -0.780 -0.415 -1.428 1.679 sum -29.484 4.922 14.582 33.259 Atomic orbital electron populations 1.23575 0.74357 1.05865 1.02579 1.86539 1.25190 1.31869 1.83924 1.21362 0.89551 0.81388 0.71674 1.90816 1.67584 1.36977 1.48158 1.19092 0.88642 0.95796 1.15683 1.21165 0.94264 0.96823 0.91256 1.21436 0.93845 0.98826 1.09570 1.19519 0.82480 0.94651 0.91362 1.86114 1.17218 1.32459 1.87244 1.23365 0.91228 0.82796 1.05390 1.21541 0.92295 0.99930 0.86473 1.45723 1.06185 1.63240 1.21466 1.19891 0.82989 0.77802 0.87127 1.90696 1.53943 1.52062 1.47346 1.23277 0.98474 1.05292 0.99335 1.84678 1.04532 1.80916 1.24682 1.22477 0.96800 1.45815 1.02742 0.92008 1.25570 1.01147 0.93276 0.95971 1.70018 1.24034 1.41357 1.20088 0.85858 0.79466 0.81206 0.79779 1.18733 1.18364 1.15973 1.20667 0.94284 0.96760 1.07471 1.21400 0.92527 0.98466 0.90947 0.84857 0.91870 0.91959 0.83998 0.81885 0.88535 0.87126 0.88199 0.91366 0.74696 0.87080 0.86750 0.91385 0.83242 0.82318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.57 113.37 1.20 1.47 16 2 O -0.36 -5.34 9.81 -56.62 -0.56 -5.90 16 3 C 0.51 9.46 7.89 70.26 0.55 10.01 16 4 O -0.54 -12.76 16.13 19.84 0.32 -12.44 16 5 C -0.19 -2.99 5.87 -20.09 -0.12 -3.11 16 6 C -0.02 -0.23 9.59 22.51 0.22 -0.02 16 7 C -0.22 -2.39 9.01 22.33 0.20 -2.19 16 8 C 0.17 2.21 6.70 22.64 0.15 2.36 16 9 O -0.32 -4.37 10.07 -90.13 -0.91 -5.28 16 10 C 0.05 0.42 4.87 71.98 0.35 0.77 16 11 C 0.12 1.91 6.06 86.38 0.52 2.43 16 12 N -0.71 -14.92 5.50 -463.05 -2.55 -17.47 16 13 C 0.54 17.38 7.85 87.65 0.69 18.07 16 14 O -0.56 -22.84 15.86 -3.04 -0.05 -22.89 16 15 C -0.11 -4.12 6.16 71.23 0.44 -3.68 16 16 S -0.17 -8.70 18.55 -56.49 -1.05 -9.75 16 17 C -0.53 -30.72 10.04 67.95 0.68 -30.04 16 18 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 19 C 0.05 2.67 5.50 84.86 0.47 3.14 16 20 N -0.92 -55.62 13.97 21.65 0.30 -55.32 16 21 Si 0.92 44.67 27.74 68.60 1.90 46.58 16 22 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 24 H -0.24 -11.45 6.74 99.48 0.67 -10.78 16 25 C -0.17 -2.27 9.97 22.32 0.22 -2.04 16 26 C -0.02 -0.20 9.61 22.51 0.22 0.02 16 27 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.14 1.85 7.64 -2.91 -0.02 1.82 16 31 H 0.16 0.90 6.28 -2.91 -0.02 0.88 16 32 H 0.10 0.52 7.64 -2.39 -0.02 0.50 16 33 H 0.11 0.47 7.66 -2.39 -0.02 0.46 16 34 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.42 6.61 8.47 -92.71 -0.79 5.82 16 37 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 38 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 39 H 0.28 15.51 8.31 -92.70 -0.77 14.74 16 40 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.16 1.47 7.60 -2.91 -0.02 1.45 16 Total: -1.00 -79.64 374.92 3.45 -76.18 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.25 Total: 9.11 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 5.79 Total: -2.82 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -2.25 Total: -72.79 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -1.19 Total: -46.51 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.90 Total: 46.58 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.05 Total: -9.75 kcal Total: -79.64 3.45 -76.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518699283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.049 kcal (2) G-P(sol) polarization free energy of solvation -79.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds