Wall clock time and date at job start Tue Mar 31 2020 22:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 113.99790 * 2 1 4 4 C 1.53003 * 109.46832 * 184.97363 * 3 2 1 5 5 N 1.46495 * 109.47095 * 65.53720 * 4 3 2 6 6 C 1.46502 * 120.00342 * 80.62381 * 5 4 3 7 7 C 1.50704 * 109.46665 * 85.00584 * 6 5 4 8 8 H 1.08003 * 120.00005 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99905 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99824 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99984 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47059 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46646 * 120.00066 * 11 9 7 14 14 H 1.48491 * 109.47169 * 239.99966 * 11 9 7 15 15 S 1.65603 * 119.99810 * 260.63070 * 5 4 3 16 16 O 1.42103 * 106.40170 * 29.05409 * 15 5 4 17 17 O 1.42102 * 106.40430 * 161.97458 * 15 5 4 18 18 C 1.76205 * 107.21620 * 275.51486 * 15 5 4 19 19 C 1.37859 * 120.01942 * 112.18335 * 18 15 5 20 20 C 1.38724 * 120.68795 * 179.97438 * 19 18 15 21 21 C 1.37761 * 120.27716 * 0.02639 * 20 19 18 22 22 C 1.39386 * 119.59618 * 359.97438 * 21 20 19 23 23 C 1.46791 * 134.33973 * 180.02562 * 22 21 20 24 24 C 1.33991 * 106.18233 * 179.97438 * 23 22 21 25 25 O 1.34451 * 110.15999 * 359.97438 * 24 23 22 26 26 C 1.34829 * 110.89687 * 359.73684 * 25 24 23 27 27 H 1.09002 * 109.47042 * 184.98100 * 1 2 3 28 28 H 1.08999 * 109.47449 * 304.97621 * 1 2 3 29 29 H 1.08996 * 109.47327 * 64.98373 * 1 2 3 30 30 H 1.09003 * 109.46718 * 64.98096 * 3 2 1 31 31 H 1.08992 * 109.47063 * 304.97504 * 3 2 1 32 32 H 1.08997 * 109.47475 * 305.52932 * 4 3 2 33 33 H 1.08999 * 109.46587 * 185.53160 * 4 3 2 34 34 H 1.09007 * 109.46957 * 205.00084 * 6 5 4 35 35 H 1.08996 * 109.47455 * 325.00284 * 6 5 4 36 36 H 0.96991 * 119.99949 * 179.97438 * 10 9 7 37 37 H 1.08000 * 119.65579 * 359.97438 * 19 18 15 38 38 H 1.08002 * 119.85756 * 179.97438 * 20 19 18 39 39 H 1.07993 * 120.20220 * 179.97438 * 21 20 19 40 40 H 1.08002 * 126.90974 * 0.02562 * 23 22 21 41 41 H 1.07993 * 124.91918 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5304 1.1869 -0.1251 5 7 3.8702 0.6235 -1.4340 6 6 3.8895 1.4842 -2.6193 7 6 5.2305 2.1637 -2.7249 8 1 5.9920 1.9738 -1.9829 9 6 5.4849 3.0287 -3.7681 10 7 4.5574 3.2603 -4.6712 11 14 7.1468 3.8715 -3.8985 12 1 8.0083 3.4448 -2.7667 13 1 7.7932 3.4951 -5.1814 14 1 6.9601 5.3438 -3.8515 15 16 4.2324 -0.9864 -1.5737 16 8 3.5123 -1.6505 -0.5442 17 8 4.0965 -1.3103 -2.9506 18 6 5.9410 -1.1722 -1.1852 19 6 6.3193 -1.8393 -0.0396 20 6 7.6604 -1.9941 0.2795 21 6 8.6349 -1.4804 -0.5478 22 6 8.2657 -0.8037 -1.7090 23 6 9.0059 -0.1454 -2.7922 24 6 8.0834 0.3311 -3.6392 25 8 6.8495 0.0361 -3.1941 26 6 6.9076 -0.6529 -2.0366 27 1 -0.3633 -1.0238 0.0892 28 1 -0.3634 0.5891 0.8420 29 1 -0.3634 0.4346 -0.9312 30 1 1.7608 1.8142 0.9313 31 1 1.6198 1.8770 -0.8420 32 1 3.9099 0.5343 0.6611 33 1 3.9812 2.1744 -0.0265 34 1 3.7174 0.8798 -3.5100 35 1 3.1062 2.2373 -2.5344 36 1 4.7361 3.8690 -5.4049 37 1 5.5636 -2.2457 0.6163 38 1 7.9417 -2.5188 1.1806 39 1 9.6786 -1.6012 -0.2980 40 1 10.0785 -0.0624 -2.8878 41 1 8.2997 0.8727 -4.5481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590746269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:40 Heat of formation + Delta-G solvation = -71.447205 kcal Electronic energy + Delta-G solvation = -29195.666906 eV Core-core repulsion = 25170.285962 eV Total energy + Delta-G solvation = -4025.380944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.04251 -37.68751 -37.61277 -36.37233 -35.37790 -35.01937 -32.59924 -32.52092 -30.26184 -29.42788 -29.06467 -26.70781 -25.72102 -23.47545 -22.95446 -22.20194 -21.46831 -21.27830 -18.35352 -17.41576 -17.02199 -16.84186 -16.40883 -16.21372 -15.96943 -15.53717 -15.36520 -15.11003 -14.78338 -14.51639 -14.38880 -13.71552 -13.36483 -13.08787 -12.70935 -12.55336 -12.35424 -12.13162 -12.01923 -11.89652 -11.64862 -11.60425 -11.47920 -11.24576 -11.13865 -11.08493 -10.97418 -10.57481 -10.43559 -10.23907 -10.07937 -9.95066 -9.73954 -9.24011 -8.48028 -8.47013 -8.07684 -8.00346 -6.08886 -4.10896 0.76758 1.23636 1.58912 2.61392 3.14952 3.18705 3.27525 3.29625 3.60568 3.85617 4.22253 4.34752 4.49516 4.69672 4.81658 5.04771 5.15770 5.25808 5.41756 5.43968 5.49988 5.52950 5.60142 5.62034 5.69563 5.72612 5.73564 5.89741 5.92010 5.96048 6.21064 6.29928 6.34210 6.43059 6.56583 6.62826 6.81988 7.34591 7.45680 7.51078 7.57670 7.69862 7.88436 8.18192 8.90010 9.51413 10.99955 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010097 B = 0.007174 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.390422 B = 3902.007846 C = 5887.404715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.040 3.960 4 C 0.136 3.864 5 N -0.976 5.976 6 C 0.244 3.756 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.068 3.932 10 N -0.889 5.889 11 Si 0.873 3.127 12 H -0.269 1.269 13 H -0.281 1.281 14 H -0.284 1.284 15 S 2.690 3.310 16 O -0.954 6.954 17 O -0.953 6.953 18 C -0.662 4.662 19 C -0.003 4.003 20 C -0.169 4.169 21 C -0.025 4.025 22 C -0.155 4.155 23 C -0.230 4.230 24 C 0.029 3.971 25 O -0.134 6.134 26 C 0.151 3.849 27 H 0.081 0.919 28 H 0.034 0.966 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.262 0.738 37 H 0.149 0.851 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.155 0.845 41 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.378 -5.656 9.193 11.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C -0.039 4.039 4 C 0.009 3.991 5 N -0.815 5.815 6 C 0.122 3.878 7 C -0.557 4.557 8 H 0.077 0.923 9 C -0.134 4.134 10 N -0.528 5.528 11 Si 0.700 3.300 12 H -0.193 1.193 13 H -0.207 1.207 14 H -0.210 1.210 15 S 2.777 3.223 16 O -0.945 6.945 17 O -0.944 6.944 18 C -0.745 4.745 19 C -0.022 4.022 20 C -0.188 4.188 21 C -0.043 4.043 22 C -0.157 4.157 23 C -0.249 4.249 24 C -0.038 4.038 25 O -0.031 6.031 26 C 0.100 3.900 27 H 0.099 0.901 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.167 0.833 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.173 0.827 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.659 -6.295 8.641 11.016 hybrid contribution 1.823 1.320 -0.030 2.251 sum 4.482 -4.975 8.611 10.908 Atomic orbital electron populations 1.22694 0.82388 1.02154 0.99413 1.88123 1.18433 1.27059 1.95221 1.23087 0.95366 0.85366 1.00054 1.21113 0.92459 1.01037 0.84513 1.57354 1.81745 1.27535 1.14839 1.19261 0.97537 0.89859 0.81146 1.21482 0.99079 1.25404 1.09758 0.92317 1.24820 0.96385 0.96630 0.95551 1.69925 1.33051 1.36289 1.13566 0.86850 0.85065 0.79920 0.78118 1.19340 1.20688 1.20985 1.02128 0.73234 0.73256 0.73662 1.93557 1.68789 1.73035 1.59082 1.93565 1.85492 1.82607 1.32697 1.30113 1.26007 1.14843 1.03587 1.20826 0.97231 0.91719 0.92402 1.21032 0.92630 1.04133 1.01037 1.20698 0.99552 0.92741 0.91302 1.20023 0.93111 1.04519 0.98060 1.22351 0.99989 1.06690 0.95852 1.24029 0.81262 0.98799 0.99664 1.84615 1.29538 1.57188 1.31731 1.18726 0.93778 0.91428 0.86091 0.90091 0.94713 0.94427 0.93080 0.92449 0.90697 0.88705 0.92703 0.94292 0.92786 0.83309 0.84962 0.85440 0.82731 0.78240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.57 9.13 -51.74 -0.47 -7.04 16 3 C 0.04 0.64 6.24 37.16 0.23 0.87 16 4 C 0.14 2.36 5.82 -4.04 -0.02 2.34 16 5 N -0.98 -20.68 2.73 -115.66 -0.32 -20.99 16 6 C 0.24 6.02 5.39 -5.19 -0.03 5.99 16 7 C -0.52 -13.28 7.12 -34.44 -0.25 -13.52 16 8 H 0.06 1.50 7.03 -52.48 -0.37 1.13 16 9 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -24.86 13.29 55.43 0.74 -24.12 16 11 Si 0.87 19.93 28.69 -169.99 -4.88 15.05 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 S 2.69 57.75 5.58 -107.50 -0.60 57.15 16 16 O -0.95 -20.05 14.53 -64.44 -0.94 -20.98 16 17 O -0.95 -23.80 16.35 -57.17 -0.93 -24.74 16 18 C -0.66 -12.94 5.93 -39.48 -0.23 -13.17 16 19 C 0.00 -0.04 9.53 -39.54 -0.38 -0.42 16 20 C -0.17 -2.29 10.03 -39.58 -0.40 -2.69 16 21 C -0.02 -0.35 10.10 -39.33 -0.40 -0.75 16 22 C -0.16 -2.74 6.40 -105.16 -0.67 -3.41 16 23 C -0.23 -3.70 11.14 -37.62 -0.42 -4.12 16 24 C 0.03 0.52 11.20 29.24 0.33 0.85 16 25 O -0.13 -2.97 7.79 3.85 0.03 -2.94 16 26 C 0.15 3.11 6.66 -38.49 -0.26 2.86 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.95 7.69 -51.93 -0.40 0.55 16 32 H 0.07 1.18 7.62 -51.93 -0.40 0.79 16 33 H 0.09 1.56 8.13 -51.93 -0.42 1.13 16 34 H 0.06 1.52 6.88 -51.93 -0.36 1.16 16 35 H 0.04 0.98 7.66 -51.93 -0.40 0.58 16 36 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.15 2.07 7.30 -52.49 -0.38 1.69 16 38 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 40 H 0.16 1.91 8.06 -52.49 -0.42 1.48 16 41 H 0.20 3.11 7.96 -52.49 -0.42 2.69 16 LS Contribution 356.74 15.07 5.38 5.38 Total: -1.00 -33.50 356.74 -8.70 -42.20 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.24 Total: 2.97 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -1.47 Total: -21.94 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.42 Total: -45.11 kcal Atomic # 8 Polarization: -53.38 SS G_CDS: -2.31 Total: -55.69 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.88 Total: 15.05 kcal Atomic # 16 Polarization: 57.75 SS G_CDS: -0.60 Total: 57.15 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.50 -8.70 -42.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590746269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.247 kcal (2) G-P(sol) polarization free energy of solvation -33.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds