Wall clock time and date at job start Tue Mar 31 2020 23:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99847 * 2 1 4 4 H 1.48497 * 109.47219 * 264.89609 * 3 2 1 5 5 H 1.48496 * 109.47347 * 24.89870 * 3 2 1 6 6 H 1.48510 * 109.47016 * 144.89743 * 3 2 1 7 7 C 1.37878 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00203 * 185.78402 * 7 2 1 9 9 C 1.50698 * 119.99642 * 5.78904 * 7 2 1 10 10 O 1.42901 * 110.90505 * 59.79375 * 9 7 2 11 11 C 1.55433 * 111.10628 * 295.82891 * 9 7 2 12 12 C 1.54323 * 103.04335 * 206.29444 * 11 9 7 13 13 N 1.47437 * 107.23507 * 22.28716 * 12 11 9 14 14 C 1.46901 * 111.00123 * 123.25040 * 13 12 11 15 15 C 1.50700 * 109.46709 * 69.15898 * 14 13 12 16 16 C 1.38263 * 119.93899 * 89.99962 * 15 14 13 17 17 C 1.38287 * 120.09678 * 180.02562 * 16 15 14 18 18 Cl 1.73605 * 119.97627 * 180.02562 * 17 16 15 19 19 C 1.38804 * 120.04914 * 359.97438 * 17 16 15 20 20 C 1.38927 * 119.80925 * 359.87328 * 19 17 16 21 21 C 1.38184 * 119.93908 * 269.72449 * 15 14 13 22 22 O 1.36112 * 120.78064 * 180.36419 * 20 19 17 23 23 C 1.43185 * 116.69470 * 342.51840 * 22 20 19 24 24 C 1.53472 * 108.23491 * 46.31037 * 23 22 20 25 25 O 1.36127 * 119.40234 * 179.64220 * 19 17 16 26 26 C 1.47854 * 108.56935 * 0.98664 * 13 12 11 27 27 H 0.97004 * 119.99867 * 0.02562 * 1 2 3 28 28 H 0.96704 * 113.99798 * 298.27322 * 10 9 7 29 29 H 1.09006 * 110.69127 * 87.90904 * 11 9 7 30 30 H 1.08989 * 110.84164 * 324.76070 * 11 9 7 31 31 H 1.09000 * 109.89299 * 262.87648 * 12 11 9 32 32 H 1.09005 * 109.88160 * 141.69239 * 12 11 9 33 33 H 1.09003 * 109.47039 * 189.15651 * 14 13 12 34 34 H 1.08994 * 109.47665 * 309.15850 * 14 13 12 35 35 H 1.07994 * 119.95161 * 0.04109 * 16 15 14 36 36 H 1.07993 * 119.95365 * 359.96709 * 21 15 14 37 37 H 1.08996 * 109.71001 * 166.00051 * 23 22 20 38 38 H 1.08997 * 109.70609 * 286.62776 * 23 22 20 39 39 H 1.08997 * 109.70807 * 60.00230 * 24 23 22 40 40 H 1.09004 * 109.70246 * 180.57956 * 24 23 22 41 41 H 1.09000 * 110.37333 * 94.73287 * 26 13 12 42 42 H 1.08994 * 110.37463 * 216.96705 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6045 1.9842 -1.3945 5 1 1.3968 2.6814 0.5894 6 1 3.4887 1.4737 0.8052 7 6 2.0046 -1.1940 0.0005 8 1 3.0804 -1.1964 0.0948 9 6 1.2568 -2.4958 -0.1305 10 8 0.5244 -2.5420 -1.3567 11 6 0.3194 -2.7279 1.0874 12 6 0.1987 -4.2653 1.1460 13 7 1.3724 -4.8225 0.4491 14 6 2.1269 -5.7257 1.3282 15 6 1.3184 -6.9721 1.5808 16 6 1.4462 -8.0603 0.7374 17 6 0.7055 -9.2055 0.9659 18 17 0.8690 -10.5702 -0.0947 19 6 -0.1678 -9.2650 2.0431 20 6 -0.2931 -8.1723 2.8918 21 6 0.4549 -7.0275 2.6582 22 8 -1.1380 -8.2119 3.9582 23 6 -2.1438 -9.2309 3.9445 24 6 -1.4791 -10.5565 3.5491 25 8 -0.8959 -10.3962 2.2514 26 6 2.2203 -3.7033 -0.0140 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1518 -1.8554 -1.4370 29 1 -0.6554 -2.2711 0.9157 30 1 0.7689 -2.3414 2.0019 31 1 -0.7157 -4.5849 0.6461 32 1 0.1917 -4.5972 2.1843 33 1 3.0692 -5.9944 0.8506 34 1 2.3293 -5.2258 2.2754 35 1 2.1257 -8.0159 -0.1008 36 1 0.3609 -6.1778 3.3181 37 1 -2.5871 -9.3232 4.9360 38 1 -2.9156 -8.9757 3.2185 39 1 -0.7035 -10.8088 4.2721 40 1 -2.2273 -11.3487 3.5212 41 1 3.0040 -3.4945 0.7142 42 1 2.6575 -3.9350 -0.9851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148124.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:18 Heat of formation + Delta-G solvation = -91.868033 kcal Electronic energy + Delta-G solvation = -27343.695677 eV Core-core repulsion = 23315.385514 eV Total energy + Delta-G solvation = -4028.310163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.45057 -38.95167 -37.74669 -37.47397 -36.36759 -34.68458 -32.12856 -31.92858 -30.82737 -29.78703 -28.43820 -28.02216 -25.84884 -24.56163 -23.88171 -22.58683 -20.91532 -19.91708 -19.54496 -18.74709 -17.63095 -17.32428 -17.01491 -15.75792 -15.51995 -15.21154 -15.00584 -14.87928 -14.70736 -14.52913 -14.41209 -14.24909 -13.93501 -13.51384 -12.96736 -12.63352 -12.47667 -12.27766 -11.96817 -11.90229 -11.50433 -11.37291 -11.25325 -11.14514 -11.04489 -10.91354 -10.77451 -10.76672 -10.64553 -10.43284 -10.23852 -9.84270 -9.17499 -8.63306 -8.55245 -8.20860 -8.04304 -7.62091 -6.20951 -4.28936 1.01220 1.13479 2.04064 2.77486 2.94802 3.22934 3.29726 3.31957 3.45865 3.95212 4.29539 4.48798 4.50592 4.57899 4.71082 4.85346 4.90076 5.06879 5.13146 5.16169 5.21534 5.31366 5.64207 5.67458 5.80953 5.83703 5.90150 5.98478 6.12144 6.16257 6.40964 6.47172 6.49152 6.63220 6.67496 6.87928 7.08411 7.14720 7.40811 7.50456 7.62080 7.72514 7.82524 8.16342 8.72902 9.39984 9.50241 10.85497 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020400 B = 0.002704 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.247276 B =10353.564212 C =11156.835168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.252 3.748 10 O -0.578 6.578 11 C -0.144 4.144 12 C 0.042 3.958 13 N -0.521 5.521 14 C 0.088 3.912 15 C -0.046 4.046 16 C -0.086 4.086 17 C -0.030 4.030 18 Cl -0.057 7.057 19 C 0.050 3.950 20 C 0.061 3.939 21 C -0.101 4.101 22 O -0.303 6.303 23 C 0.019 3.981 24 C 0.021 3.979 25 O -0.297 6.297 26 C 0.058 3.942 27 H 0.266 0.734 28 H 0.376 0.624 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.046 0.954 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.122 0.878 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.122 0.878 41 H 0.048 0.952 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.309 -19.602 8.226 21.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.079 0.921 9 C 0.212 3.788 10 O -0.385 6.385 11 C -0.183 4.183 12 C -0.085 4.085 13 N -0.245 5.245 14 C -0.040 4.040 15 C -0.047 4.047 16 C -0.106 4.106 17 C -0.058 4.058 18 Cl -0.028 7.028 19 C 0.004 3.996 20 C 0.016 3.984 21 C -0.120 4.120 22 O -0.217 6.217 23 C -0.056 4.056 24 C -0.055 4.055 25 O -0.212 6.212 26 C -0.068 4.068 27 H 0.076 0.924 28 H 0.225 0.775 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.162 0.838 36 H 0.157 0.843 37 H 0.140 0.860 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.140 0.860 41 H 0.066 0.934 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.254 -20.449 7.638 21.945 hybrid contribution 0.033 1.620 0.967 1.887 sum -2.222 -18.829 8.605 20.821 Atomic orbital electron populations 1.69775 1.05919 1.27379 1.50132 1.24997 0.94965 0.99406 0.93688 0.86511 0.79734 0.82700 0.78443 1.20339 1.21218 1.19914 1.21522 0.93946 0.90871 1.51188 0.92095 1.19560 0.87221 0.90690 0.81331 1.86153 1.54437 1.57721 1.40199 1.23317 1.02661 0.91649 1.00689 1.22908 0.93735 0.96510 0.95376 1.63669 1.07545 1.17853 1.35425 1.21171 0.95570 0.90655 0.96567 1.19540 0.96799 0.95299 0.93097 1.20761 0.99522 0.90265 1.00006 1.20055 0.99755 0.91569 0.94403 1.98357 1.96937 1.43303 1.64210 1.18404 0.96917 0.86703 0.97582 1.18617 0.95746 0.93590 0.90488 1.20500 0.97013 0.95600 0.98871 1.86349 1.42702 1.53172 1.39506 1.23655 0.89915 0.87091 1.04963 1.23642 0.98974 0.98613 0.84280 1.86379 1.64701 1.37382 1.32720 1.23017 0.95069 0.89610 0.99134 0.92399 0.77524 0.90507 0.92650 0.91816 0.94338 0.89849 0.93612 0.83820 0.84282 0.85999 0.90266 0.90470 0.86001 0.93391 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.65 10.80 55.43 0.60 -23.05 16 2 C 0.07 1.89 5.29 -17.82 -0.09 1.79 16 3 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -14.17 8.26 -34.44 -0.28 -14.45 16 8 H 0.06 1.59 7.79 -52.49 -0.41 1.18 16 9 C 0.25 6.17 0.87 -89.47 -0.08 6.09 16 10 O -0.58 -15.03 13.16 -35.23 -0.46 -15.50 16 11 C -0.14 -3.27 5.42 -24.75 -0.13 -3.41 16 12 C 0.04 0.82 6.26 -2.84 -0.02 0.80 16 13 N -0.52 -9.80 5.15 -232.68 -1.20 -11.00 16 14 C 0.09 1.33 4.75 -4.98 -0.02 1.31 16 15 C -0.05 -0.65 5.09 -104.63 -0.53 -1.18 16 16 C -0.09 -1.17 9.47 -39.55 -0.37 -1.54 16 17 C -0.03 -0.41 6.33 -39.35 -0.25 -0.66 16 18 Cl -0.06 -0.72 28.46 -51.86 -1.48 -2.19 16 19 C 0.05 0.67 6.49 -39.12 -0.25 0.42 16 20 C 0.06 0.82 6.49 -39.14 -0.25 0.56 16 21 C -0.10 -1.39 8.62 -39.42 -0.34 -1.73 16 22 O -0.30 -3.66 10.42 -32.90 -0.34 -4.00 16 23 C 0.02 0.15 7.26 37.40 0.27 0.43 16 24 C 0.02 0.16 7.26 37.40 0.27 0.43 16 25 O -0.30 -3.55 9.84 -32.95 -0.32 -3.87 16 26 C 0.06 1.23 5.85 -2.29 -0.01 1.22 16 27 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.38 9.86 7.56 45.56 0.34 10.20 16 29 H 0.08 1.87 7.56 -51.93 -0.39 1.48 16 30 H 0.05 1.28 8.04 -51.94 -0.42 0.86 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.04 0.67 5.46 -51.93 -0.28 0.38 16 33 H 0.08 1.13 8.02 -51.93 -0.42 0.71 16 34 H 0.05 0.67 7.92 -51.93 -0.41 0.26 16 35 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.14 1.85 6.92 -52.49 -0.36 1.49 16 37 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.96 7.70 -51.93 -0.40 0.56 16 42 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -29.21 354.60 -9.83 -39.05 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -4.84 Total: 9.71 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -2.11 Total: -9.93 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: -0.60 Total: -34.05 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -1.13 Total: -23.37 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.48 Total: -2.19 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.21 -9.83 -39.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148124.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.818 kcal (2) G-P(sol) polarization free energy of solvation -29.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds