Wall clock time and date at job start Tue Mar 31 2020 22:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47130 * 2 1 4 4 C 1.50706 * 109.46971 * 119.99777 * 2 1 3 5 5 O 1.20823 * 120.00101 * 120.00217 * 4 2 1 6 6 O 1.34235 * 119.99652 * 299.99603 * 4 2 1 7 7 C 1.52996 * 109.47041 * 239.99200 * 2 1 3 8 8 N 1.46499 * 115.55274 * 305.52468 * 7 2 1 9 9 S 1.65599 * 120.00004 * 176.12276 * 8 7 2 10 10 O 1.42096 * 106.40198 * 180.75611 * 9 8 7 11 11 O 1.42098 * 106.40200 * 313.67289 * 9 8 7 12 12 C 1.76199 * 107.22086 * 67.21184 * 9 8 7 13 13 C 1.38661 * 119.87255 * 71.23633 * 12 9 8 14 14 C 1.38612 * 120.50189 * 179.97438 * 13 12 9 15 15 C 1.37645 * 120.24695 * 359.97438 * 14 13 12 16 16 C 1.40696 * 119.74601 * 359.97438 * 15 14 13 17 17 C 1.41392 * 120.24563 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99924 * 140.68135 * 17 16 15 19 19 C 1.39943 * 120.00015 * 320.68833 * 17 16 15 20 20 N 1.30819 * 120.00180 * 352.86698 * 19 17 16 21 21 Si 1.86800 * 119.99946 * 172.87586 * 19 17 16 22 22 H 1.48502 * 109.47189 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47092 * 119.99291 * 21 19 17 24 24 H 1.48496 * 109.47208 * 239.99342 * 21 19 17 25 25 C 1.37596 * 119.88105 * 250.96669 * 12 9 8 26 26 C 1.52998 * 117.51487 * 91.22585 * 7 2 1 27 27 C 1.52995 * 60.00289 * 107.48151 * 26 7 2 28 28 H 1.08993 * 109.46976 * 176.52671 * 1 2 3 29 29 H 1.09007 * 109.46757 * 296.52586 * 1 2 3 30 30 H 1.08994 * 109.46830 * 56.51800 * 1 2 3 31 31 H 0.96702 * 116.99316 * 180.02562 * 6 4 2 32 32 H 0.96996 * 119.99632 * 356.39332 * 8 7 2 33 33 H 1.08002 * 119.75305 * 359.97438 * 13 12 9 34 34 H 1.08005 * 119.87764 * 180.02562 * 14 13 12 35 35 H 1.08001 * 120.12571 * 179.97438 * 15 14 13 36 36 H 0.97000 * 120.00166 * 180.02562 * 20 19 17 37 37 H 1.07999 * 120.12182 * 0.02562 * 25 12 9 38 38 H 1.09008 * 117.49746 * 214.96899 * 26 7 2 39 39 H 1.09003 * 117.50184 * 359.97438 * 26 7 2 40 40 H 1.08999 * 117.49662 * 252.51338 * 27 26 7 41 41 H 1.08997 * 117.52326 * 107.47939 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7270 -1.6927 1.1198 6 8 1.7081 -0.2516 2.4497 7 6 2.0400 -0.7214 -1.2491 8 7 1.5266 -2.0789 -1.4487 9 16 1.9304 -2.9244 -2.8141 10 8 1.2703 -4.1791 -2.7190 11 8 1.7510 -2.0328 -3.9059 12 6 3.6573 -3.2627 -2.7266 13 6 4.1341 -4.1893 -1.8118 14 6 5.4900 -4.4658 -1.7321 15 6 6.3789 -3.8221 -2.5629 16 6 5.9064 -2.8808 -3.4957 17 6 6.8102 -2.2130 -4.3538 18 1 6.5406 -2.0275 -5.3830 19 6 8.0540 -1.7927 -3.8696 20 7 8.3264 -1.8908 -2.5938 21 14 9.3254 -1.0913 -5.0448 22 1 8.7757 -1.0881 -6.4243 23 1 9.6590 0.2983 -4.6413 24 1 10.5522 -1.9269 -5.0032 25 6 4.5272 -2.6106 -3.5700 26 6 2.3030 0.1249 -2.4963 27 6 3.4767 -0.4373 -1.6919 28 1 -0.3633 -1.0257 -0.0623 29 1 -0.3633 0.4590 0.9196 30 1 -0.3633 0.5669 -0.8571 31 1 2.0541 -0.7404 3.2089 32 1 0.9469 -2.4809 -0.7830 33 1 3.4437 -4.6994 -1.1563 34 1 5.8503 -5.1897 -1.0161 35 1 7.4350 -4.0388 -2.4988 36 1 9.1885 -1.5990 -2.2581 37 1 4.1533 -1.8922 -4.2845 38 1 2.0939 -0.3283 -3.4654 39 1 2.1123 1.1959 -2.4272 40 1 4.0584 0.2638 -1.0935 41 1 4.0400 -1.2605 -2.1313 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593273884.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:26 Heat of formation + Delta-G solvation = -110.622727 kcal Electronic energy + Delta-G solvation = -28557.568053 eV Core-core repulsion = 24530.488331 eV Total energy + Delta-G solvation = -4027.079722 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.56302 -38.49044 -37.65420 -36.63751 -35.98397 -35.38979 -33.70472 -32.61679 -31.83318 -30.04423 -29.90600 -25.43169 -25.37383 -22.66509 -22.08456 -21.77917 -21.02377 -20.06212 -18.93196 -18.04020 -17.81457 -17.55395 -16.72665 -15.91055 -15.65286 -15.50866 -15.12263 -14.76843 -14.55648 -14.34975 -13.81114 -13.55028 -13.40485 -13.36092 -12.78777 -12.57372 -12.34008 -12.28621 -11.93764 -11.76172 -11.63905 -11.57333 -11.43634 -11.43404 -11.31566 -11.07895 -11.04568 -10.79621 -10.58152 -10.46419 -10.28521 -10.11799 -9.70650 -9.59559 -9.30155 -8.71922 -7.95534 -7.53110 -6.78357 -4.52067 0.96534 2.14723 2.21395 2.63520 2.86655 3.05827 3.06416 3.11824 3.40045 3.91834 4.01178 4.26991 4.38395 4.50142 4.63850 4.84697 4.94861 5.02158 5.25124 5.31952 5.34476 5.48908 5.56587 5.77927 5.92424 6.00315 6.10124 6.14247 6.20319 6.45130 6.58328 6.64971 6.68908 6.75785 6.83264 7.10951 7.19163 7.22208 7.34025 7.65470 7.86906 7.87738 7.92438 8.42443 8.70402 8.79178 10.21178 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012985 B = 0.004398 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.795923 B = 6365.480162 C = 6943.454909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.040 4.040 3 H 0.122 0.878 4 C 0.470 3.530 5 O -0.484 6.484 6 O -0.522 6.522 7 C 0.123 3.877 8 N -1.077 6.077 9 S 2.692 3.308 10 O -0.974 6.974 11 O -0.965 6.965 12 C -0.640 4.640 13 C -0.116 4.116 14 C -0.127 4.127 15 C -0.094 4.094 16 C 0.098 3.902 17 C -0.475 4.475 18 H 0.082 0.918 19 C 0.075 3.925 20 N -0.814 5.814 21 Si 0.911 3.089 22 H -0.261 1.261 23 H -0.275 1.275 24 H -0.274 1.274 25 C -0.116 4.116 26 C -0.208 4.208 27 C -0.207 4.207 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.408 0.592 32 H 0.413 0.587 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.280 0.720 37 H 0.120 0.880 38 H 0.154 0.846 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.656 5.676 7.550 14.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.060 4.060 3 H 0.140 0.860 4 C 0.311 3.689 5 O -0.369 6.369 6 O -0.334 6.334 7 C 0.032 3.968 8 N -0.831 5.831 9 S 2.788 3.212 10 O -0.964 6.964 11 O -0.955 6.955 12 C -0.732 4.732 13 C -0.136 4.136 14 C -0.146 4.146 15 C -0.113 4.113 16 C 0.095 3.905 17 C -0.506 4.506 18 H 0.100 0.900 19 C -0.140 4.140 20 N -0.441 5.441 21 Si 0.736 3.264 22 H -0.184 1.184 23 H -0.200 1.200 24 H -0.199 1.199 25 C -0.137 4.137 26 C -0.247 4.247 27 C -0.245 4.245 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.267 0.733 32 H 0.247 0.753 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.134 0.866 36 H 0.090 0.910 37 H 0.138 0.862 38 H 0.171 0.829 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.945 5.479 6.543 13.879 hybrid contribution 1.606 -0.091 1.026 1.908 sum -9.339 5.388 7.570 13.174 Atomic orbital electron populations 1.21760 0.91424 1.03348 1.03583 1.20591 0.98345 0.99972 0.87136 0.86049 1.23461 0.77749 0.83219 0.84501 1.90830 1.33986 1.25225 1.86842 1.84509 1.72634 1.59377 1.16927 1.19760 0.98894 0.83265 0.94833 1.54822 1.63247 1.23621 1.41415 1.01598 0.74948 0.72377 0.72268 1.93535 1.74874 1.41990 1.86044 1.93373 1.86282 1.64352 1.51500 1.29758 1.22268 1.11382 1.09774 1.20046 0.95723 0.99205 0.98674 1.20822 0.93335 1.00678 0.99785 1.21588 0.98856 0.94178 0.96718 1.17657 0.90924 0.89942 0.92003 1.19500 0.98927 1.33987 0.98168 0.90031 1.25802 0.98485 0.94339 0.95379 1.69732 1.22970 1.37868 1.13502 0.86204 0.80062 0.78858 0.81251 1.18436 1.20006 1.19932 1.20951 0.94114 0.99568 0.99073 1.24650 1.01682 1.00184 0.98181 1.24358 0.91189 1.05877 1.03102 0.91877 0.91015 0.90330 0.73350 0.75316 0.87999 0.88242 0.86562 0.90967 0.86219 0.82882 0.88308 0.88381 0.84401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.04 37.16 0.34 -0.89 16 2 C -0.04 -0.44 2.69 -91.77 -0.25 -0.68 16 3 H 0.12 1.09 8.09 -51.93 -0.42 0.67 16 4 C 0.47 5.77 7.57 36.01 0.27 6.04 16 5 O -0.48 -7.87 16.41 -18.75 -0.31 -8.17 16 6 O -0.52 -4.74 13.26 -39.27 -0.52 -5.26 16 7 C 0.12 1.77 1.53 -131.82 -0.20 1.57 16 8 N -1.08 -16.61 5.33 0.54 0.00 -16.60 16 9 S 2.69 50.83 5.38 -107.50 -0.58 50.25 16 10 O -0.97 -20.28 17.84 -57.18 -1.02 -21.30 16 11 O -0.96 -18.99 13.27 -57.18 -0.76 -19.75 16 12 C -0.64 -13.91 4.27 -39.66 -0.17 -14.08 16 13 C -0.12 -2.54 9.59 -39.29 -0.38 -2.91 16 14 C -0.13 -2.86 10.02 -39.66 -0.40 -3.26 16 15 C -0.09 -2.32 8.62 -38.87 -0.33 -2.65 16 16 C 0.10 2.49 5.42 -106.83 -0.58 1.91 16 17 C -0.47 -12.12 9.01 -37.74 -0.34 -12.46 16 18 H 0.08 2.02 7.86 -52.49 -0.41 1.61 16 19 C 0.08 1.84 5.27 -17.34 -0.09 1.75 16 20 N -0.81 -20.53 11.42 55.55 0.63 -19.89 16 21 Si 0.91 18.45 29.57 -169.99 -5.03 13.43 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 25 C -0.12 -2.71 6.97 -38.87 -0.27 -2.98 16 26 C -0.21 -3.07 9.50 -26.73 -0.25 -3.32 16 27 C -0.21 -3.55 9.61 -26.73 -0.26 -3.81 16 28 H 0.06 0.55 7.00 -51.93 -0.36 0.19 16 29 H 0.07 0.51 8.03 -51.93 -0.42 0.09 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.41 2.24 9.10 45.56 0.41 2.65 16 32 H 0.41 5.53 7.83 -34.47 -0.27 5.26 16 33 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 34 H 0.10 1.98 8.06 -52.48 -0.42 1.56 16 35 H 0.12 2.93 6.94 -52.49 -0.36 2.57 16 36 H 0.28 6.47 8.30 -40.82 -0.34 6.14 16 37 H 0.12 2.70 7.33 -52.49 -0.38 2.31 16 38 H 0.15 2.58 4.69 -52.00 -0.24 2.34 16 39 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 41 H 0.14 2.84 2.99 -51.93 -0.16 2.68 16 LS Contribution 351.60 15.07 5.30 5.30 Total: -1.00 -32.03 351.60 -9.05 -41.08 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -3.86 Total: 16.71 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: -2.91 Total: -35.78 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.64 Total: -36.49 kcal Atomic # 8 Polarization: -51.88 SS G_CDS: -2.61 Total: -54.49 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.43 kcal Atomic # 16 Polarization: 50.83 SS G_CDS: -0.58 Total: 50.25 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.03 -9.05 -41.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593273884.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.547 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds