Wall clock time and date at job start Tue Mar 31 2020 22:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47176 * 2 1 4 4 C 1.50694 * 109.47363 * 239.99301 * 2 1 3 5 5 O 1.20826 * 120.00512 * 264.06949 * 4 2 1 6 6 O 1.34228 * 119.99902 * 84.06489 * 4 2 1 7 7 C 1.53004 * 109.46892 * 119.99592 * 2 1 3 8 8 N 1.46496 * 115.55035 * 183.75316 * 7 2 1 9 9 S 1.65591 * 120.00283 * 66.42401 * 8 7 2 10 10 O 1.42101 * 106.40547 * 180.14092 * 9 8 7 11 11 O 1.42102 * 106.40338 * 313.05988 * 9 8 7 12 12 C 1.76205 * 107.21786 * 66.60211 * 9 8 7 13 13 C 1.38657 * 119.87540 * 83.61139 * 12 9 8 14 14 C 1.38611 * 120.49862 * 179.97438 * 13 12 9 15 15 C 1.37643 * 120.25108 * 0.02562 * 14 13 12 16 16 C 1.40698 * 119.74056 * 0.02562 * 15 14 13 17 17 C 1.41396 * 120.24194 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00199 * 155.31139 * 17 16 15 19 19 C 1.39950 * 119.99685 * 335.31698 * 17 16 15 20 20 N 1.30824 * 120.00307 * 337.77455 * 19 17 16 21 21 Si 1.86809 * 119.99614 * 157.77742 * 19 17 16 22 22 H 1.48497 * 109.46832 * 90.00124 * 21 19 17 23 23 H 1.48497 * 109.46823 * 209.99517 * 21 19 17 24 24 H 1.48495 * 109.47089 * 329.99567 * 21 19 17 25 25 C 1.37595 * 119.87538 * 263.33237 * 12 9 8 26 26 C 1.53006 * 117.49809 * 329.42341 * 7 2 1 27 27 C 1.53002 * 117.49867 * 38.07784 * 7 2 1 28 28 H 1.09005 * 109.46648 * 61.95127 * 1 2 3 29 29 H 1.09000 * 109.47368 * 181.94804 * 1 2 3 30 30 H 1.09000 * 109.47467 * 301.95280 * 1 2 3 31 31 H 0.96699 * 117.00002 * 180.02562 * 6 4 2 32 32 H 0.97003 * 119.99872 * 246.69954 * 8 7 2 33 33 H 1.07991 * 119.74867 * 359.97438 * 13 12 9 34 34 H 1.08001 * 119.87316 * 180.02562 * 14 13 12 35 35 H 1.07998 * 120.12576 * 179.97438 * 15 14 13 36 36 H 0.96995 * 119.99733 * 179.97438 * 20 19 17 37 37 H 1.08011 * 120.12571 * 0.02562 * 25 12 9 38 38 H 1.09004 * 117.49657 * 215.00242 * 26 7 2 39 39 H 1.08998 * 117.49682 * 0.02562 * 26 7 2 40 40 H 1.09005 * 117.49794 * 359.97438 * 27 7 2 41 41 H 1.09003 * 117.49940 * 144.99453 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.3358 -1.8786 -1.1719 6 8 2.1428 -0.0457 -2.3912 7 6 2.0400 -0.7212 1.2493 8 7 3.4940 -0.7243 1.4278 9 16 4.2950 0.6945 1.7235 10 8 5.6712 0.3610 1.8431 11 8 3.8029 1.6371 0.7809 12 6 3.7811 1.2627 3.3103 13 6 4.3929 0.7687 4.4523 14 6 3.9992 1.2070 5.7070 15 6 2.9941 2.1390 5.8320 16 6 2.3654 2.6464 4.6801 17 6 1.3313 3.6037 4.7963 18 1 1.1232 4.2759 3.9771 19 6 0.5775 3.6801 5.9729 20 7 0.5053 2.6466 6.7718 21 14 -0.3256 5.2579 6.4028 22 1 -1.6925 5.2191 5.8239 23 1 -0.4168 5.3894 7.8791 24 1 0.4147 6.4190 5.8471 25 6 2.7780 2.1991 3.4112 26 6 1.1738 -0.6510 2.5086 27 6 1.2682 -1.9571 1.7161 28 1 -0.3633 0.4833 -0.9070 29 1 -0.3634 -1.0271 0.0349 30 1 -0.3634 0.5438 0.8719 31 1 2.4693 -0.5438 -3.1530 32 1 3.9881 -1.5570 1.3688 33 1 5.1821 0.0369 4.3636 34 1 4.4830 0.8158 6.5898 35 1 2.6886 2.4788 6.8106 36 1 -0.0169 2.6998 7.5875 37 1 2.3056 2.5856 2.5201 38 1 1.6858 -0.6071 3.4699 39 1 0.2405 -0.0913 2.4469 40 1 0.3969 -2.2561 1.1334 41 1 1.8424 -2.7726 2.1559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593273888.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:28 Heat of formation + Delta-G solvation = -123.400372 kcal Electronic energy + Delta-G solvation = -28417.896458 eV Core-core repulsion = 24390.262656 eV Total energy + Delta-G solvation = -4027.633802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.53805 -38.40508 -37.65048 -36.65799 -35.94572 -35.35012 -33.88075 -32.64002 -31.50038 -30.11260 -29.83568 -25.52944 -25.47136 -22.70944 -22.31834 -21.87391 -21.00245 -19.75010 -18.81964 -18.09110 -17.88251 -17.08207 -16.65016 -16.02679 -15.93886 -15.64516 -15.32812 -15.05455 -14.70691 -14.47802 -13.54349 -13.50694 -13.40982 -12.97206 -12.66963 -12.61651 -12.25522 -11.95688 -11.90415 -11.73453 -11.65872 -11.50366 -11.45286 -11.36402 -11.33388 -11.12324 -11.06806 -10.99439 -10.91271 -10.65230 -10.37782 -9.82031 -9.79040 -9.64936 -9.33149 -9.12880 -8.07139 -7.74198 -7.00072 -4.54907 0.97414 2.16114 2.26994 2.61358 2.98002 2.98436 2.98740 3.07418 3.43109 3.79921 3.90073 4.18265 4.35419 4.52051 4.77060 4.90716 4.96543 5.06868 5.21610 5.29664 5.37447 5.58280 5.69450 5.80393 5.90395 6.00981 6.06398 6.15428 6.22442 6.29218 6.40110 6.51660 6.63542 6.70990 6.81893 6.98649 7.15909 7.21460 7.36330 7.68912 7.77165 7.90266 7.95535 8.36538 8.63288 8.68847 9.96671 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013663 B = 0.004340 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.870172 B = 6449.901629 C = 7333.487679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.070 4.070 3 H 0.139 0.861 4 C 0.489 3.511 5 O -0.512 6.512 6 O -0.514 6.514 7 C 0.108 3.892 8 N -1.086 6.086 9 S 2.684 3.316 10 O -0.976 6.976 11 O -0.970 6.970 12 C -0.625 4.625 13 C -0.150 4.150 14 C -0.118 4.118 15 C -0.122 4.122 16 C 0.096 3.904 17 C -0.462 4.462 18 H 0.083 0.917 19 C 0.080 3.920 20 N -0.787 5.787 21 Si 0.905 3.095 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.259 1.259 25 C -0.120 4.120 26 C -0.160 4.160 27 C -0.153 4.153 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.405 0.595 32 H 0.416 0.584 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.284 0.716 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.684 -6.096 -8.406 10.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 H 0.156 0.844 4 C 0.332 3.668 5 O -0.400 6.400 6 O -0.325 6.325 7 C 0.017 3.983 8 N -0.841 5.841 9 S 2.781 3.219 10 O -0.966 6.966 11 O -0.960 6.960 12 C -0.718 4.718 13 C -0.172 4.172 14 C -0.137 4.137 15 C -0.141 4.141 16 C 0.092 3.908 17 C -0.491 4.491 18 H 0.101 0.899 19 C -0.139 4.139 20 N -0.412 5.412 21 Si 0.729 3.271 22 H -0.193 1.193 23 H -0.200 1.200 24 H -0.183 1.183 25 C -0.142 4.142 26 C -0.199 4.199 27 C -0.192 4.192 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.263 0.737 32 H 0.251 0.749 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.136 0.864 36 H 0.095 0.905 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.122 0.878 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.319 -5.734 -8.430 10.456 hybrid contribution -0.231 -0.152 0.508 0.578 sum -2.550 -5.886 -7.922 10.193 Atomic orbital electron populations 1.21955 0.90944 1.03348 1.04359 1.21017 0.98041 1.02761 0.87261 0.84357 1.23427 0.73752 0.85402 0.84261 1.90671 1.46226 1.17693 1.85362 1.84597 1.79314 1.47922 1.20650 1.19876 0.79205 1.04839 0.94335 1.55020 1.14030 1.26508 1.88517 1.01823 0.72599 0.72326 0.75143 1.93532 1.31458 1.83673 1.87984 1.93482 1.80965 1.60730 1.60795 1.29644 1.11384 1.12727 1.17998 1.20005 1.01746 1.03553 0.91848 1.20764 0.98307 0.98983 0.95653 1.21502 0.95084 0.98266 0.99294 1.17630 0.91545 0.91065 0.90511 1.19570 1.13629 1.15446 1.00447 0.89850 1.25904 0.95655 0.97015 0.95335 1.69804 1.31719 1.28671 1.10968 0.86360 0.79921 0.82504 0.78361 1.19308 1.20026 1.18253 1.20748 0.97583 0.97786 0.98038 1.23752 1.01413 0.99278 0.95424 1.23257 1.01652 0.91684 1.02558 0.91004 0.91486 0.89412 0.73729 0.74908 0.87990 0.88513 0.86412 0.90544 0.86886 0.86641 0.86888 0.87849 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.22 37.16 0.31 -1.28 16 2 C -0.07 -0.97 2.76 -91.77 -0.25 -1.22 16 3 H 0.14 2.15 5.99 -51.93 -0.31 1.83 16 4 C 0.49 6.78 7.35 36.00 0.26 7.05 16 5 O -0.51 -7.84 16.76 -18.75 -0.31 -8.16 16 6 O -0.51 -5.97 13.42 -39.25 -0.53 -6.50 16 7 C 0.11 1.55 1.54 -131.82 -0.20 1.35 16 8 N -1.09 -16.75 5.80 0.54 0.00 -16.75 16 9 S 2.68 50.51 5.74 -107.50 -0.62 49.89 16 10 O -0.98 -20.45 17.45 -57.17 -1.00 -21.44 16 11 O -0.97 -19.49 14.56 -57.17 -0.83 -20.32 16 12 C -0.63 -13.07 5.26 -39.66 -0.21 -13.28 16 13 C -0.15 -3.17 9.53 -39.29 -0.37 -3.54 16 14 C -0.12 -2.55 10.02 -39.66 -0.40 -2.94 16 15 C -0.12 -2.89 8.71 -38.87 -0.34 -3.23 16 16 C 0.10 2.33 5.56 -106.83 -0.59 1.73 16 17 C -0.46 -11.17 9.03 -37.74 -0.34 -11.51 16 18 H 0.08 1.95 7.94 -52.49 -0.42 1.53 16 19 C 0.08 1.84 5.03 -17.34 -0.09 1.75 16 20 N -0.79 -18.46 11.25 55.55 0.63 -17.84 16 21 Si 0.90 17.24 29.61 -169.99 -5.03 12.21 16 22 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 23 H -0.28 -5.17 7.11 56.52 0.40 -4.76 16 24 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 25 C -0.12 -2.69 9.23 -38.88 -0.36 -3.05 16 26 C -0.16 -2.26 9.37 -26.69 -0.25 -2.51 16 27 C -0.15 -1.87 9.48 -26.69 -0.25 -2.12 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.64 6.25 -51.93 -0.32 0.31 16 30 H 0.09 0.90 6.42 -51.93 -0.33 0.57 16 31 H 0.40 2.78 9.10 45.56 0.41 3.20 16 32 H 0.42 5.68 8.96 -34.46 -0.31 5.38 16 33 H 0.10 1.97 7.76 -52.49 -0.41 1.56 16 34 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.12 2.86 6.35 -52.49 -0.33 2.52 16 36 H 0.28 6.07 8.30 -40.82 -0.34 5.73 16 37 H 0.11 2.42 7.47 -52.48 -0.39 2.03 16 38 H 0.12 1.88 7.78 -51.93 -0.40 1.48 16 39 H 0.11 1.48 6.16 -51.93 -0.32 1.16 16 40 H 0.10 1.10 6.34 -51.93 -0.33 0.77 16 41 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 356.14 15.07 5.37 5.37 Total: -1.00 -30.54 356.14 -9.28 -39.82 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -3.87 Total: 16.53 kcal Atomic # 6 Polarization: -29.72 SS G_CDS: -3.09 Total: -32.80 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.63 Total: -34.59 kcal Atomic # 8 Polarization: -53.75 SS G_CDS: -2.67 Total: -56.42 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.03 Total: 12.21 kcal Atomic # 16 Polarization: 50.51 SS G_CDS: -0.62 Total: 49.89 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.54 -9.28 -39.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593273888.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.580 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds