Wall clock time and date at job start Tue Mar 31 2020 22:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47176 * 2 1 4 4 C 1.50694 * 109.47363 * 239.99301 * 2 1 3 5 5 O 1.20826 * 120.00512 * 264.06949 * 4 2 1 6 6 O 1.34228 * 119.99902 * 84.06489 * 4 2 1 7 7 C 1.53004 * 109.46892 * 119.99592 * 2 1 3 8 8 N 1.46496 * 115.55035 * 183.75316 * 7 2 1 9 9 S 1.65591 * 120.00283 * 66.42401 * 8 7 2 10 10 O 1.42101 * 106.40547 * 180.14092 * 9 8 7 11 11 O 1.42102 * 106.40338 * 313.05988 * 9 8 7 12 12 C 1.76205 * 107.21786 * 66.60211 * 9 8 7 13 13 C 1.38657 * 119.87540 * 83.61139 * 12 9 8 14 14 C 1.38611 * 120.49862 * 179.97438 * 13 12 9 15 15 C 1.37643 * 120.25108 * 0.02562 * 14 13 12 16 16 C 1.40698 * 119.74056 * 0.02562 * 15 14 13 17 17 C 1.41396 * 120.24194 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00199 * 155.31139 * 17 16 15 19 19 C 1.39950 * 119.99685 * 335.31698 * 17 16 15 20 20 N 1.30824 * 120.00307 * 337.77455 * 19 17 16 21 21 Si 1.86809 * 119.99614 * 157.77742 * 19 17 16 22 22 H 1.48497 * 109.46832 * 90.00124 * 21 19 17 23 23 H 1.48497 * 109.46823 * 209.99517 * 21 19 17 24 24 H 1.48495 * 109.47089 * 329.99567 * 21 19 17 25 25 C 1.37595 * 119.87538 * 263.33237 * 12 9 8 26 26 C 1.53006 * 117.49809 * 329.42341 * 7 2 1 27 27 C 1.53002 * 117.49867 * 38.07784 * 7 2 1 28 28 H 1.09005 * 109.46648 * 61.95127 * 1 2 3 29 29 H 1.09000 * 109.47368 * 181.94804 * 1 2 3 30 30 H 1.09000 * 109.47467 * 301.95280 * 1 2 3 31 31 H 0.96699 * 117.00002 * 180.02562 * 6 4 2 32 32 H 0.97003 * 119.99872 * 246.69954 * 8 7 2 33 33 H 1.07991 * 119.74867 * 359.97438 * 13 12 9 34 34 H 1.08001 * 119.87316 * 180.02562 * 14 13 12 35 35 H 1.07998 * 120.12576 * 179.97438 * 15 14 13 36 36 H 0.96995 * 119.99733 * 179.97438 * 20 19 17 37 37 H 1.08011 * 120.12571 * 0.02562 * 25 12 9 38 38 H 1.09004 * 117.49657 * 215.00242 * 26 7 2 39 39 H 1.08998 * 117.49682 * 0.02562 * 26 7 2 40 40 H 1.09005 * 117.49794 * 359.97438 * 27 7 2 41 41 H 1.09003 * 117.49940 * 144.99453 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.3358 -1.8786 -1.1719 6 8 2.1428 -0.0457 -2.3912 7 6 2.0400 -0.7212 1.2493 8 7 3.4940 -0.7243 1.4278 9 16 4.2950 0.6945 1.7235 10 8 5.6712 0.3610 1.8431 11 8 3.8029 1.6371 0.7809 12 6 3.7811 1.2627 3.3103 13 6 4.3929 0.7687 4.4523 14 6 3.9992 1.2070 5.7070 15 6 2.9941 2.1390 5.8320 16 6 2.3654 2.6464 4.6801 17 6 1.3313 3.6037 4.7963 18 1 1.1232 4.2759 3.9771 19 6 0.5775 3.6801 5.9729 20 7 0.5053 2.6466 6.7718 21 14 -0.3256 5.2579 6.4028 22 1 -1.6925 5.2191 5.8239 23 1 -0.4168 5.3894 7.8791 24 1 0.4147 6.4190 5.8471 25 6 2.7780 2.1991 3.4112 26 6 1.1738 -0.6510 2.5086 27 6 1.2682 -1.9571 1.7161 28 1 -0.3633 0.4833 -0.9070 29 1 -0.3634 -1.0271 0.0349 30 1 -0.3634 0.5438 0.8719 31 1 2.4693 -0.5438 -3.1530 32 1 3.9881 -1.5570 1.3688 33 1 5.1821 0.0369 4.3636 34 1 4.4830 0.8158 6.5898 35 1 2.6886 2.4788 6.8106 36 1 -0.0169 2.6998 7.5875 37 1 2.3056 2.5856 2.5201 38 1 1.6858 -0.6071 3.4699 39 1 0.2405 -0.0913 2.4469 40 1 0.3969 -2.2561 1.1334 41 1 1.8424 -2.7726 2.1559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593273888.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:28 Heat of formation + Delta-G solvation = -144.207775 kcal Electronic energy + Delta-G solvation = -28418.798735 eV Core-core repulsion = 24390.262656 eV Total energy + Delta-G solvation = -4028.536079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.58212 -39.55988 -39.31223 -38.24815 -36.95768 -36.95536 -35.62340 -33.80213 -32.59115 -31.87332 -31.56261 -27.28040 -26.44921 -23.77691 -23.66955 -23.30009 -22.73397 -21.00650 -20.28400 -19.42219 -19.13267 -18.51146 -17.85781 -17.62234 -17.11821 -16.96341 -16.63798 -16.43760 -16.39738 -15.79645 -15.21664 -15.05409 -14.48923 -14.28896 -14.12021 -13.82225 -13.63785 -13.36388 -13.33061 -13.12374 -13.05315 -12.99903 -12.93599 -12.79843 -12.63476 -12.56677 -12.43808 -12.26518 -12.14703 -12.06210 -11.54399 -11.47902 -11.26097 -11.04795 -10.88941 -10.40042 -9.81175 -9.51489 -8.72341 -6.37015 -0.55092 0.43764 0.90292 1.22364 1.41359 1.47104 1.55776 2.00284 2.04485 2.20624 2.56412 2.73011 2.85249 3.35572 3.47875 3.57360 3.74518 3.86221 4.01515 4.27856 4.30126 4.37210 4.46762 4.60601 4.74626 4.82478 4.88078 4.93753 4.98229 5.06980 5.09883 5.16001 5.24623 5.28025 5.34169 5.44679 5.61680 5.62131 5.92411 5.97994 6.00689 6.14067 6.57285 6.84863 6.90089 7.04164 8.26660 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013663 B = 0.004340 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.870172 B = 6449.901629 C = 7333.487679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 H 0.118 0.882 4 C 0.491 3.509 5 O -0.529 6.529 6 O -0.514 6.514 7 C 0.090 3.910 8 N -1.074 6.074 9 S 2.708 3.292 10 O -0.995 6.995 11 O -0.982 6.982 12 C -0.628 4.628 13 C -0.155 4.155 14 C -0.119 4.119 15 C -0.144 4.144 16 C 0.072 3.928 17 C -0.494 4.494 18 H 0.081 0.919 19 C 0.047 3.953 20 N -0.812 5.812 21 Si 0.972 3.028 22 H -0.259 1.259 23 H -0.268 1.268 24 H -0.263 1.263 25 C -0.127 4.127 26 C -0.170 4.170 27 C -0.127 4.127 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.425 0.575 32 H 0.426 0.574 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.291 0.709 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.489 -6.865 -9.153 11.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 H 0.136 0.864 4 C 0.334 3.666 5 O -0.419 6.419 6 O -0.327 6.327 7 C 0.000 4.000 8 N -0.832 5.832 9 S 2.803 3.197 10 O -0.986 6.986 11 O -0.972 6.972 12 C -0.718 4.718 13 C -0.176 4.176 14 C -0.138 4.138 15 C -0.164 4.164 16 C 0.069 3.931 17 C -0.523 4.523 18 H 0.099 0.901 19 C -0.170 4.170 20 N -0.437 5.437 21 Si 0.793 3.207 22 H -0.184 1.184 23 H -0.192 1.192 24 H -0.187 1.187 25 C -0.148 4.148 26 C -0.209 4.209 27 C -0.166 4.166 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.287 0.713 32 H 0.263 0.737 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.132 0.868 38 H 0.108 0.892 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.112 -6.505 -9.178 11.672 hybrid contribution 0.067 0.001 0.650 0.654 sum -3.045 -6.503 -8.528 11.148 Atomic orbital electron populations 1.21995 0.88697 1.04578 1.05097 1.21046 1.00019 1.01401 0.87232 0.86406 1.23374 0.73361 0.85106 0.84735 1.90660 1.47118 1.18302 1.85785 1.84550 1.79061 1.48143 1.20974 1.20143 0.78251 1.06879 0.94713 1.54674 1.14875 1.25779 1.87898 1.01102 0.71976 0.72621 0.74010 1.93500 1.32937 1.84148 1.87983 1.93469 1.81106 1.61980 1.60632 1.30005 1.10364 1.11930 1.19517 1.20315 1.01959 1.03643 0.91691 1.21039 0.97627 0.98177 0.96996 1.21486 0.96433 0.99780 0.98688 1.17931 0.92108 0.91637 0.91419 1.19787 1.14683 1.16273 1.01549 0.90129 1.26613 0.96043 0.99672 0.94690 1.69832 1.32284 1.30179 1.11425 0.85347 0.78819 0.78249 0.78282 1.18374 1.19233 1.18663 1.20778 0.98245 0.98292 0.97529 1.23668 1.01526 1.01408 0.94250 1.23399 1.01548 0.90754 1.00885 0.89724 0.89903 0.89361 0.71339 0.73675 0.86055 0.86086 0.87631 0.89772 0.86763 0.89170 0.86206 0.85616 0.87235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.22 71.98 0.59 -2.26 16 2 C -0.08 -2.00 2.76 -11.54 -0.03 -2.03 16 3 H 0.12 3.61 5.99 -2.39 -0.01 3.60 16 4 C 0.49 12.72 7.35 71.23 0.52 13.24 16 5 O -0.53 -15.09 16.76 21.96 0.37 -14.72 16 6 O -0.51 -10.96 13.42 -51.40 -0.69 -11.65 16 7 C 0.09 2.47 1.54 3.61 0.01 2.48 16 8 N -1.07 -31.99 5.80 -152.20 -0.88 -32.87 16 9 S 2.71 100.65 5.74 -56.49 -0.32 100.33 16 10 O -1.00 -40.84 17.45 -128.00 -2.23 -43.08 16 11 O -0.98 -39.32 14.56 -128.00 -1.86 -41.18 16 12 C -0.63 -26.35 5.26 22.22 0.12 -26.23 16 13 C -0.16 -6.48 9.53 22.46 0.21 -6.27 16 14 C -0.12 -5.16 10.02 22.22 0.22 -4.94 16 15 C -0.14 -7.00 8.71 22.73 0.20 -6.81 16 16 C 0.07 3.61 5.56 -21.29 -0.12 3.49 16 17 C -0.49 -24.55 9.03 23.46 0.21 -24.34 16 18 H 0.08 3.89 7.94 -2.91 -0.02 3.87 16 19 C 0.05 2.17 5.03 85.26 0.43 2.60 16 20 N -0.81 -38.62 11.25 21.83 0.25 -38.38 16 21 Si 0.97 35.32 29.61 68.60 2.03 37.35 16 22 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 23 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 24 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 25 C -0.13 -5.82 9.23 22.73 0.21 -5.61 16 26 C -0.17 -4.68 9.37 30.62 0.29 -4.39 16 27 C -0.13 -2.82 9.48 30.62 0.29 -2.53 16 28 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.08 1.33 6.25 -2.39 -0.01 1.32 16 30 H 0.09 1.70 6.42 -2.39 -0.02 1.69 16 31 H 0.43 4.91 9.10 -74.06 -0.67 4.24 16 32 H 0.43 10.99 8.96 -96.75 -0.87 10.12 16 33 H 0.12 4.54 7.76 -2.92 -0.02 4.51 16 34 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 35 H 0.11 5.29 6.35 -2.91 -0.02 5.28 16 36 H 0.29 12.51 8.30 -92.71 -0.77 11.74 16 37 H 0.11 5.06 7.47 -2.90 -0.02 5.04 16 38 H 0.09 2.97 7.78 -2.38 -0.02 2.95 16 39 H 0.12 3.08 6.16 -2.39 -0.01 3.07 16 40 H 0.13 2.25 6.34 -2.38 -0.02 2.24 16 41 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -65.21 356.14 -0.63 -65.83 By element: Atomic # 1 Polarization: 42.39 SS G_CDS: -0.43 Total: 41.96 kcal Atomic # 6 Polarization: -66.75 SS G_CDS: 3.15 Total: -63.60 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -0.64 Total: -71.25 kcal Atomic # 8 Polarization: -106.21 SS G_CDS: -4.42 Total: -110.63 kcal Atomic # 14 Polarization: 35.32 SS G_CDS: 2.03 Total: 37.35 kcal Atomic # 16 Polarization: 100.65 SS G_CDS: -0.32 Total: 100.33 kcal Total: -65.21 -0.63 -65.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593273888.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.373 kcal (2) G-P(sol) polarization free energy of solvation -65.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds