Wall clock time and date at job start Tue Mar 31 2020 22:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00106 * 2 1 4 4 H 1.08999 * 108.89423 * 31.32865 * 3 2 1 5 5 C 1.54214 * 108.92593 * 272.79209 * 3 2 1 6 6 S 1.83821 * 102.86189 * 264.30183 * 5 3 2 7 7 O 1.42100 * 109.81159 * 77.68175 * 6 5 3 8 8 O 1.42096 * 109.80842 * 211.99805 * 6 5 3 9 9 C 1.83641 * 94.17546 * 324.79592 * 6 5 3 10 10 C 1.52377 * 108.92754 * 150.00180 * 3 2 1 11 11 H 1.09001 * 108.92190 * 0.13388 * 10 3 2 12 12 N 1.46501 * 108.92697 * 241.48543 * 10 3 2 13 13 C 1.34775 * 119.99867 * 152.96536 * 12 10 3 14 14 O 1.21548 * 120.00078 * 0.02562 * 13 12 10 15 15 C 1.47890 * 119.99720 * 180.02562 * 13 12 10 16 16 C 1.39919 * 120.02695 * 359.97438 * 15 13 12 17 17 C 1.38323 * 120.35748 * 180.02562 * 16 15 13 18 18 C 1.37754 * 120.41273 * 359.71496 * 17 16 15 19 19 C 1.40748 * 120.03975 * 0.56052 * 18 17 16 20 20 C 1.41439 * 120.17682 * 179.71798 * 19 18 17 21 21 H 1.07996 * 120.00132 * 25.02743 * 20 19 18 22 22 C 1.39941 * 119.99475 * 204.75330 * 20 19 18 23 23 N 1.30818 * 120.00406 * 17.43949 * 22 20 19 24 24 Si 1.86798 * 119.99622 * 197.44007 * 22 20 19 25 25 H 1.48508 * 109.47279 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47071 * 120.00124 * 24 22 20 27 27 H 1.48496 * 109.47444 * 239.99922 * 24 22 20 28 28 C 1.38999 * 120.02182 * 180.02562 * 15 13 12 29 29 H 1.09007 * 109.46931 * 300.00312 * 1 2 3 30 30 H 1.09002 * 109.47352 * 59.99863 * 1 2 3 31 31 H 1.09001 * 109.47674 * 180.02562 * 1 2 3 32 32 H 1.09004 * 110.73447 * 22.64728 * 5 3 2 33 33 H 1.08993 * 110.73408 * 145.77613 * 5 3 2 34 34 H 1.08994 * 110.75527 * 276.87027 * 9 6 5 35 35 H 1.09002 * 110.63465 * 153.60893 * 9 6 5 36 36 H 0.96998 * 119.99843 * 332.97122 * 12 10 3 37 37 H 1.07995 * 119.81598 * 359.97438 * 16 15 13 38 38 H 1.07997 * 119.79534 * 180.02562 * 17 16 15 39 39 H 1.08004 * 119.97886 * 180.28445 * 18 17 16 40 40 H 0.97001 * 120.00132 * 179.97438 * 23 22 20 41 41 H 1.08001 * 120.20249 * 359.95732 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3491 1.9862 0.5362 5 6 2.1488 1.7913 -1.4570 6 16 3.8837 1.3483 -1.8729 7 8 3.9729 -0.0430 -2.1475 8 8 4.4155 2.2943 -2.7902 9 6 4.5182 1.6939 -0.1846 10 6 3.3517 1.2492 0.7206 11 1 3.5318 0.2269 1.0530 12 7 3.2986 2.1266 1.8927 13 6 4.0792 1.8715 2.9613 14 8 4.8276 0.9138 2.9525 15 6 4.0252 2.7569 4.1446 16 6 3.1642 3.8598 4.1552 17 6 3.1086 4.6927 5.2581 18 6 3.8954 4.4430 6.3609 19 6 4.7718 3.3417 6.3664 20 6 5.5853 3.0861 7.4948 21 1 5.2835 3.4401 8.4694 22 6 6.7784 2.3694 7.3492 23 7 7.3179 2.2306 6.1655 24 14 7.6008 1.6110 8.8452 25 1 6.7959 1.9093 10.0570 26 1 7.6967 0.1401 8.6648 27 1 8.9633 2.1801 9.0029 28 6 4.8305 2.4946 5.2468 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.4497 1.2654 -2.1073 33 1 1.9968 2.8687 -1.5206 34 1 4.7210 2.7574 -0.0583 35 1 5.4113 1.1029 0.0186 36 1 2.7015 2.8910 1.8996 37 1 2.5405 4.0623 3.2971 38 1 2.4405 5.5412 5.2566 39 1 3.8430 5.0953 7.2201 40 1 8.1451 1.7341 6.0647 41 1 5.4966 1.6445 5.2430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598031538.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:44 Heat of formation + Delta-G solvation = -118.951691 kcal Electronic energy + Delta-G solvation = -27154.992115 eV Core-core repulsion = 23127.551222 eV Total energy + Delta-G solvation = -4027.440893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.00381 -38.70145 -37.22523 -37.15298 -36.21844 -35.48808 -33.84407 -32.36789 -30.36238 -29.56810 -29.24796 -27.37015 -25.57350 -25.09004 -22.72860 -21.33909 -20.90088 -19.85708 -19.16700 -18.05644 -17.47032 -17.13101 -16.46132 -16.20006 -15.98848 -15.66639 -15.37092 -15.18563 -14.92114 -14.62767 -14.42704 -13.89730 -13.54224 -13.38639 -13.33891 -13.03846 -12.75209 -12.59984 -12.45635 -12.32393 -12.23285 -11.96293 -11.73367 -11.59894 -11.25626 -11.15748 -10.94465 -10.81034 -10.78282 -10.55758 -10.21651 -10.10693 -9.78199 -9.29926 -9.18586 -9.01777 -7.74445 -7.61598 -6.87717 -4.49545 -0.21591 2.05767 2.18968 2.72864 2.87999 3.04089 3.07847 3.09766 3.25979 3.56029 3.67270 3.78687 3.86715 4.05036 4.17064 4.32943 4.55584 4.69918 4.80537 4.84004 4.95736 5.05970 5.18383 5.38078 5.41448 5.50857 5.64399 5.71185 5.96700 6.15236 6.51061 6.61984 6.65279 6.88346 6.91189 7.12253 7.28024 7.56707 7.62697 7.79991 7.92171 8.08627 8.41548 8.70344 8.73496 8.76490 10.07093 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016500 B = 0.002880 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.529760 B = 9719.149539 C =10272.384372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.369 6.369 3 C 0.086 3.914 4 H 0.095 0.905 5 C -0.611 4.611 6 S 2.387 3.613 7 O -0.917 6.917 8 O -0.936 6.936 9 C -0.587 4.587 10 C 0.151 3.849 11 H 0.126 0.874 12 N -0.728 5.728 13 C 0.568 3.432 14 O -0.535 6.535 15 C -0.129 4.129 16 C -0.221 4.221 17 C -0.096 4.096 18 C -0.211 4.211 19 C 0.099 3.901 20 C -0.458 4.458 21 H 0.082 0.918 22 C 0.073 3.927 23 N -0.782 5.782 24 Si 0.910 3.090 25 H -0.260 1.260 26 H -0.270 1.270 27 H -0.273 1.273 28 C -0.090 4.090 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.093 0.907 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.401 0.599 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.285 0.715 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.357 0.073 -12.286 16.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.287 6.287 3 C 0.026 3.974 4 H 0.113 0.887 5 C -0.739 4.739 6 S 2.568 3.432 7 O -0.914 6.914 8 O -0.933 6.933 9 C -0.717 4.717 10 C 0.044 3.956 11 H 0.143 0.857 12 N -0.384 5.384 13 C 0.359 3.641 14 O -0.412 6.412 15 C -0.132 4.132 16 C -0.241 4.241 17 C -0.114 4.114 18 C -0.231 4.231 19 C 0.097 3.903 20 C -0.487 4.487 21 H 0.100 0.900 22 C -0.146 4.146 23 N -0.406 5.406 24 Si 0.734 3.266 25 H -0.183 1.183 26 H -0.195 1.195 27 H -0.199 1.199 28 C -0.110 4.110 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.238 0.762 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.044 -1.227 -13.263 16.682 hybrid contribution -0.507 0.702 1.265 1.533 sum -10.551 -0.525 -11.999 15.987 Atomic orbital electron populations 1.22932 0.80167 1.03572 1.00399 1.88071 1.20499 1.25422 1.94661 1.22316 0.96067 0.87075 0.91917 0.88705 1.30971 1.25876 1.11681 1.05406 1.09286 0.79465 0.75925 0.78490 1.93662 1.84737 1.29718 1.83330 1.93620 1.76355 1.63624 1.59705 1.30917 1.08426 1.12468 1.19933 1.20769 0.88953 0.99126 0.86767 0.85665 1.46079 1.45828 1.30983 1.15486 1.18915 0.78414 0.84468 0.82302 1.90719 1.38760 1.29879 1.81814 1.19393 1.02150 0.97310 0.94339 1.20295 1.05006 0.99711 0.99118 1.20428 0.98851 0.98010 0.94135 1.21112 1.03931 0.99576 0.98500 1.17606 0.90810 0.89362 0.92558 1.19644 1.03428 1.30268 0.95350 0.89957 1.25974 0.97129 0.94202 0.97327 1.69777 1.16550 1.30154 1.24163 0.86222 0.79118 0.79514 0.81710 1.18309 1.19494 1.19855 1.21651 0.97472 0.99827 0.92082 0.93286 0.93681 0.88873 0.83782 0.83514 0.83671 0.83350 0.76227 0.89322 0.88865 0.88554 0.90384 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.73 101.05 1.08 1.27 16 2 O -0.37 -3.95 10.07 -35.23 -0.35 -4.30 16 3 C 0.09 0.79 2.88 -26.41 -0.08 0.71 16 4 H 0.10 0.67 7.07 -51.93 -0.37 0.30 16 5 C -0.61 -4.17 7.01 37.79 0.26 -3.91 16 6 S 2.39 24.16 6.07 -107.50 -0.65 23.51 16 7 O -0.92 -12.66 18.17 -57.67 -1.05 -13.71 16 8 O -0.94 -12.03 18.16 -57.67 -1.05 -13.08 16 9 C -0.59 -6.42 6.99 37.79 0.26 -6.15 16 10 C 0.15 1.86 2.77 -67.61 -0.19 1.67 16 11 H 0.13 1.84 7.22 -51.93 -0.37 1.46 16 12 N -0.73 -10.32 4.88 -54.43 -0.27 -10.58 16 13 C 0.57 11.36 7.72 -12.31 -0.10 11.27 16 14 O -0.54 -12.50 15.97 5.32 0.09 -12.41 16 15 C -0.13 -2.84 5.87 -105.03 -0.62 -3.45 16 16 C -0.22 -4.28 9.55 -38.92 -0.37 -4.65 16 17 C -0.10 -1.92 10.01 -39.73 -0.40 -2.32 16 18 C -0.21 -4.79 9.78 -38.81 -0.38 -5.17 16 19 C 0.10 2.52 5.57 -106.87 -0.59 1.93 16 20 C -0.46 -11.67 9.05 -37.73 -0.34 -12.01 16 21 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 22 C 0.07 1.80 5.14 -17.35 -0.09 1.71 16 23 N -0.78 -20.14 10.97 55.55 0.61 -19.53 16 24 Si 0.91 18.31 29.59 -169.99 -5.03 13.28 16 25 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 26 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 27 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 28 C -0.09 -2.30 8.23 -38.44 -0.32 -2.62 16 29 H 0.05 0.33 8.07 -51.93 -0.42 -0.09 16 30 H 0.04 0.24 7.78 -51.93 -0.40 -0.16 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.14 0.79 7.66 -51.93 -0.40 0.39 16 33 H 0.15 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.15 1.39 8.05 -51.93 -0.42 0.98 16 35 H 0.15 1.72 8.14 -51.93 -0.42 1.30 16 36 H 0.40 4.52 6.24 -40.82 -0.25 4.27 16 37 H 0.09 1.34 6.38 -52.49 -0.33 1.01 16 38 H 0.09 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.10 2.04 8.06 -52.48 -0.42 1.61 16 40 H 0.29 6.73 8.30 -40.82 -0.34 6.40 16 41 H 0.13 3.72 5.76 -52.49 -0.30 3.42 16 LS Contribution 357.49 15.07 5.39 5.39 Total: -1.00 -34.83 357.49 -9.11 -43.93 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -4.94 Total: 9.22 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -1.85 Total: -21.72 kcal Atomic # 7 Polarization: -30.46 SS G_CDS: 0.34 Total: -30.11 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -2.36 Total: -43.50 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Atomic # 16 Polarization: 24.16 SS G_CDS: -0.65 Total: 23.51 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.83 -9.11 -43.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598031538.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.017 kcal (2) G-P(sol) polarization free energy of solvation -34.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds