Wall clock time and date at job start Tue Mar 31 2020 22:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00106 * 2 1 4 4 H 1.08999 * 108.89423 * 31.32865 * 3 2 1 5 5 C 1.54214 * 108.92593 * 272.79209 * 3 2 1 6 6 S 1.83821 * 102.86189 * 264.30183 * 5 3 2 7 7 O 1.42100 * 109.81159 * 77.68175 * 6 5 3 8 8 O 1.42096 * 109.80842 * 211.99805 * 6 5 3 9 9 C 1.83641 * 94.17546 * 324.79592 * 6 5 3 10 10 C 1.52377 * 108.92754 * 150.00180 * 3 2 1 11 11 H 1.09001 * 108.92190 * 0.13388 * 10 3 2 12 12 N 1.46501 * 108.92697 * 241.48543 * 10 3 2 13 13 C 1.34775 * 119.99867 * 152.96536 * 12 10 3 14 14 O 1.21548 * 120.00078 * 0.02562 * 13 12 10 15 15 C 1.47890 * 119.99720 * 180.02562 * 13 12 10 16 16 C 1.39919 * 120.02695 * 359.97438 * 15 13 12 17 17 C 1.38323 * 120.35748 * 180.02562 * 16 15 13 18 18 C 1.37754 * 120.41273 * 359.71496 * 17 16 15 19 19 C 1.40748 * 120.03975 * 0.56052 * 18 17 16 20 20 C 1.41439 * 120.17682 * 179.71798 * 19 18 17 21 21 H 1.07996 * 120.00132 * 25.02743 * 20 19 18 22 22 C 1.39941 * 119.99475 * 204.75330 * 20 19 18 23 23 N 1.30818 * 120.00406 * 17.43949 * 22 20 19 24 24 Si 1.86798 * 119.99622 * 197.44007 * 22 20 19 25 25 H 1.48508 * 109.47279 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47071 * 120.00124 * 24 22 20 27 27 H 1.48496 * 109.47444 * 239.99922 * 24 22 20 28 28 C 1.38999 * 120.02182 * 180.02562 * 15 13 12 29 29 H 1.09007 * 109.46931 * 300.00312 * 1 2 3 30 30 H 1.09002 * 109.47352 * 59.99863 * 1 2 3 31 31 H 1.09001 * 109.47674 * 180.02562 * 1 2 3 32 32 H 1.09004 * 110.73447 * 22.64728 * 5 3 2 33 33 H 1.08993 * 110.73408 * 145.77613 * 5 3 2 34 34 H 1.08994 * 110.75527 * 276.87027 * 9 6 5 35 35 H 1.09002 * 110.63465 * 153.60893 * 9 6 5 36 36 H 0.96998 * 119.99843 * 332.97122 * 12 10 3 37 37 H 1.07995 * 119.81598 * 359.97438 * 16 15 13 38 38 H 1.07997 * 119.79534 * 180.02562 * 17 16 15 39 39 H 1.08004 * 119.97886 * 180.28445 * 18 17 16 40 40 H 0.97001 * 120.00132 * 179.97438 * 23 22 20 41 41 H 1.08001 * 120.20249 * 359.95732 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3491 1.9862 0.5362 5 6 2.1488 1.7913 -1.4570 6 16 3.8837 1.3483 -1.8729 7 8 3.9729 -0.0430 -2.1475 8 8 4.4155 2.2943 -2.7902 9 6 4.5182 1.6939 -0.1846 10 6 3.3517 1.2492 0.7206 11 1 3.5318 0.2269 1.0530 12 7 3.2986 2.1266 1.8927 13 6 4.0792 1.8715 2.9613 14 8 4.8276 0.9138 2.9525 15 6 4.0252 2.7569 4.1446 16 6 3.1642 3.8598 4.1552 17 6 3.1086 4.6927 5.2581 18 6 3.8954 4.4430 6.3609 19 6 4.7718 3.3417 6.3664 20 6 5.5853 3.0861 7.4948 21 1 5.2835 3.4401 8.4694 22 6 6.7784 2.3694 7.3492 23 7 7.3179 2.2306 6.1655 24 14 7.6008 1.6110 8.8452 25 1 6.7959 1.9093 10.0570 26 1 7.6967 0.1401 8.6648 27 1 8.9633 2.1801 9.0029 28 6 4.8305 2.4946 5.2468 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.4497 1.2654 -2.1073 33 1 1.9968 2.8687 -1.5206 34 1 4.7210 2.7574 -0.0583 35 1 5.4113 1.1029 0.0186 36 1 2.7015 2.8910 1.8996 37 1 2.5405 4.0623 3.2971 38 1 2.4405 5.5412 5.2566 39 1 3.8430 5.0953 7.2201 40 1 8.1451 1.7341 6.0647 41 1 5.4966 1.6445 5.2430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598031538.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:43 Heat of formation + Delta-G solvation = -146.887498 kcal Electronic energy + Delta-G solvation = -27156.203502 eV Core-core repulsion = 23127.551222 eV Total energy + Delta-G solvation = -4028.652280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.27970 -39.79277 -38.76518 -38.15040 -37.15521 -36.63891 -35.60938 -33.57267 -31.82962 -31.27278 -30.27159 -27.96042 -27.24990 -26.17445 -24.11607 -22.84913 -22.12491 -21.36117 -20.01990 -19.61686 -18.46950 -18.19074 -17.58150 -17.28815 -17.04308 -16.79024 -16.59199 -16.37028 -16.31827 -15.74488 -15.68781 -15.30989 -15.05102 -14.62116 -14.41602 -14.26489 -13.91621 -13.82681 -13.48652 -13.29705 -13.20746 -13.18318 -12.96583 -12.82442 -12.77186 -12.53592 -12.30294 -12.18240 -11.91422 -11.86898 -11.52080 -11.48655 -11.09279 -10.97177 -10.70721 -10.31897 -9.48280 -9.37922 -8.67456 -6.38683 -1.02653 0.36012 1.00822 1.36059 1.39192 1.45936 1.51623 1.88920 2.04993 2.18296 2.47659 2.67442 2.77617 2.95606 3.28492 3.38208 3.52342 3.70358 3.90058 3.99761 4.08104 4.25976 4.42548 4.48054 4.56309 4.60130 4.61115 4.68158 4.81425 4.91287 4.92965 5.08795 5.19503 5.27085 5.32044 5.51838 5.85727 5.92143 6.03381 6.05707 6.29135 6.46962 6.65310 6.88180 6.94581 7.25055 8.29363 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016500 B = 0.002880 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.529760 B = 9719.149539 C =10272.384372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.400 6.400 3 C 0.085 3.915 4 H 0.131 0.869 5 C -0.573 4.573 6 S 2.398 3.602 7 O -0.963 6.963 8 O -0.964 6.964 9 C -0.595 4.595 10 C 0.146 3.854 11 H 0.093 0.907 12 N -0.700 5.700 13 C 0.565 3.435 14 O -0.582 6.582 15 C -0.139 4.139 16 C -0.193 4.193 17 C -0.095 4.095 18 C -0.216 4.216 19 C 0.067 3.933 20 C -0.498 4.498 21 H 0.083 0.917 22 C 0.030 3.970 23 N -0.826 5.826 24 Si 0.980 3.020 25 H -0.251 1.251 26 H -0.272 1.272 27 H -0.265 1.265 28 C -0.132 4.132 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.169 0.831 33 H 0.193 0.807 34 H 0.162 0.838 35 H 0.128 0.872 36 H 0.420 0.580 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.106 0.894 40 H 0.286 0.714 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.035 2.448 -13.708 20.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.319 6.319 3 C 0.025 3.975 4 H 0.149 0.851 5 C -0.705 4.705 6 S 2.584 3.416 7 O -0.960 6.960 8 O -0.961 6.961 9 C -0.724 4.724 10 C 0.039 3.961 11 H 0.111 0.889 12 N -0.356 5.356 13 C 0.356 3.644 14 O -0.462 6.462 15 C -0.142 4.142 16 C -0.213 4.213 17 C -0.113 4.113 18 C -0.236 4.236 19 C 0.065 3.935 20 C -0.528 4.528 21 H 0.101 0.899 22 C -0.184 4.184 23 N -0.452 5.452 24 Si 0.800 3.200 25 H -0.174 1.174 26 H -0.197 1.197 27 H -0.189 1.189 28 C -0.152 4.152 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.187 0.813 33 H 0.210 0.790 34 H 0.180 0.820 35 H 0.147 0.853 36 H 0.260 0.740 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.125 0.875 40 H 0.096 0.904 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.733 1.177 -14.720 20.166 hybrid contribution 0.383 0.051 1.567 1.614 sum -13.350 1.228 -13.154 18.781 Atomic orbital electron populations 1.23182 0.78361 1.04440 1.02073 1.88062 1.22546 1.26335 1.94910 1.22323 0.94305 0.87619 0.93213 0.85139 1.30860 1.21131 1.14796 1.03748 1.08777 0.81206 0.74416 0.77232 1.93603 1.86288 1.32324 1.83779 1.93579 1.78359 1.63806 1.60377 1.30927 1.07567 1.13091 1.20860 1.20924 0.91738 0.97037 0.86414 0.88915 1.45732 1.44142 1.31329 1.14359 1.18750 0.78813 0.83663 0.83222 1.90704 1.40977 1.31738 1.82758 1.19721 1.01819 0.98563 0.94100 1.20905 1.02936 0.96958 1.00461 1.20947 0.98365 0.99137 0.92866 1.21431 1.03412 0.98685 1.00082 1.17931 0.92091 0.90633 0.92879 1.19891 1.04620 1.32601 0.95674 0.89921 1.26804 0.97463 0.94160 1.00000 1.69877 1.17230 1.31760 1.26291 0.85191 0.78318 0.78195 0.78248 1.17419 1.19697 1.18929 1.21449 0.99464 0.99943 0.94364 0.92453 0.91038 0.88729 0.81281 0.78989 0.82049 0.85316 0.73966 0.83658 0.84139 0.87543 0.90397 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 10.73 113.37 1.22 1.38 16 2 O -0.40 -7.45 10.07 -148.98 -1.50 -8.95 16 3 C 0.09 1.21 2.88 30.80 0.09 1.29 16 4 H 0.13 0.99 7.07 -2.39 -0.02 0.97 16 5 C -0.57 -4.87 7.01 72.39 0.51 -4.36 16 6 S 2.40 45.22 6.07 -56.49 -0.34 44.87 16 7 O -0.96 -26.79 18.17 -127.53 -2.32 -29.11 16 8 O -0.96 -23.38 18.16 -127.53 -2.32 -25.70 16 9 C -0.59 -12.75 6.99 72.39 0.51 -12.24 16 10 C 0.15 3.38 2.77 45.20 0.13 3.50 16 11 H 0.09 2.83 7.22 -2.39 -0.02 2.81 16 12 N -0.70 -18.10 4.88 -444.39 -2.17 -20.27 16 13 C 0.57 22.67 7.72 86.80 0.67 23.34 16 14 O -0.58 -28.75 15.97 -3.87 -0.06 -28.81 16 15 C -0.14 -6.08 5.87 -20.13 -0.12 -6.20 16 16 C -0.19 -6.68 9.55 22.70 0.22 -6.47 16 17 C -0.10 -3.43 10.01 22.18 0.22 -3.21 16 18 C -0.22 -9.62 9.78 22.77 0.22 -9.39 16 19 C 0.07 3.53 5.57 -21.32 -0.12 3.41 16 20 C -0.50 -26.73 9.05 23.47 0.21 -26.52 16 21 H 0.08 4.20 7.90 -2.91 -0.02 4.18 16 22 C 0.03 1.58 5.14 85.26 0.44 2.02 16 23 N -0.83 -45.66 10.97 21.82 0.24 -45.42 16 24 Si 0.98 39.46 29.59 68.60 2.03 41.49 16 25 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 26 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 27 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 28 C -0.13 -7.05 8.23 23.01 0.19 -6.86 16 29 H 0.06 0.52 8.07 -2.38 -0.02 0.50 16 30 H 0.07 0.39 7.78 -2.39 -0.02 0.38 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.17 0.84 7.66 -2.39 -0.02 0.82 16 33 H 0.19 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.16 2.83 8.05 -2.39 -0.02 2.81 16 35 H 0.13 3.26 8.14 -2.39 -0.02 3.24 16 36 H 0.42 7.26 6.24 -92.71 -0.58 6.68 16 37 H 0.15 3.34 6.38 -2.91 -0.02 3.32 16 38 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 39 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 40 H 0.29 14.58 8.30 -92.71 -0.77 13.82 16 41 H 0.10 5.84 5.76 -2.91 -0.02 5.82 16 Total: -1.00 -84.68 357.49 -1.56 -86.24 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.50 Total: 25.98 kcal Atomic # 6 Polarization: -44.69 SS G_CDS: 4.38 Total: -40.31 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: -1.93 Total: -65.70 kcal Atomic # 8 Polarization: -86.37 SS G_CDS: -6.20 Total: -92.57 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Atomic # 16 Polarization: 45.22 SS G_CDS: -0.34 Total: 44.87 kcal Total: -84.68 -1.56 -86.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598031538.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.648 kcal (2) G-P(sol) polarization free energy of solvation -84.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds