Wall clock time and date at job start Tue Mar 31 2020 22:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99973 * 2 1 4 4 H 1.09000 * 108.89634 * 31.31769 * 3 2 1 5 5 C 1.53614 * 108.93830 * 272.76539 * 3 2 1 6 6 S 1.83237 * 105.34864 * 241.62843 * 5 3 2 7 7 O 1.42106 * 109.61455 * 133.32287 * 6 5 3 8 8 O 1.42093 * 109.61484 * 267.09866 * 6 5 3 9 9 C 1.83749 * 95.25838 * 20.37502 * 6 5 3 10 10 C 1.52972 * 108.93301 * 149.99976 * 3 2 1 11 11 H 1.08998 * 109.65411 * 210.52719 * 10 3 2 12 12 N 1.46497 * 109.65269 * 330.97066 * 10 3 2 13 13 C 1.34782 * 120.00386 * 205.25676 * 12 10 3 14 14 O 1.21547 * 119.99663 * 359.97438 * 13 12 10 15 15 C 1.47880 * 120.00231 * 180.27667 * 13 12 10 16 16 C 1.39924 * 120.02579 * 359.44523 * 15 13 12 17 17 C 1.38333 * 120.35967 * 179.71563 * 16 15 13 18 18 C 1.37749 * 120.40786 * 0.56641 * 17 16 15 19 19 C 1.40752 * 120.04269 * 359.71558 * 18 17 16 20 20 C 1.41436 * 120.17992 * 180.02562 * 19 18 17 21 21 H 1.08003 * 120.00037 * 24.43491 * 20 19 18 22 22 C 1.39938 * 120.00036 * 204.44082 * 20 19 18 23 23 N 1.30821 * 120.00089 * 17.87618 * 22 20 19 24 24 Si 1.86807 * 120.00031 * 197.87867 * 22 20 19 25 25 H 1.48503 * 109.47052 * 89.99405 * 24 22 20 26 26 H 1.48493 * 109.46999 * 209.99853 * 24 22 20 27 27 H 1.48506 * 109.46922 * 329.99924 * 24 22 20 28 28 C 1.38999 * 120.02796 * 179.72532 * 15 13 12 29 29 H 1.08995 * 109.47290 * 299.99939 * 1 2 3 30 30 H 1.09000 * 109.46917 * 59.99803 * 1 2 3 31 31 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 32 32 H 1.09006 * 110.26996 * 0.59426 * 5 3 2 33 33 H 1.08999 * 110.27540 * 122.56554 * 5 3 2 34 34 H 1.08997 * 110.98988 * 205.96846 * 9 6 5 35 35 H 1.08995 * 111.12304 * 81.95571 * 9 6 5 36 36 H 0.97001 * 120.00233 * 25.25299 * 12 10 3 37 37 H 1.08004 * 119.81800 * 0.02562 * 16 15 13 38 38 H 1.07998 * 119.79481 * 180.28129 * 17 16 15 39 39 H 1.08003 * 119.97760 * 179.69651 * 18 17 16 40 40 H 0.97002 * 120.00407 * 180.02562 * 23 22 20 41 41 H 1.08006 * 120.19776 * 359.97404 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3489 1.9863 0.5360 5 6 2.1489 1.7894 -1.4513 6 16 3.9465 2.0308 -1.7123 7 8 4.3335 1.4375 -2.9443 8 8 4.2922 3.3802 -1.4321 9 6 4.4655 0.9508 -0.3192 10 6 3.3568 1.2492 0.7235 11 1 3.5546 2.2069 1.2050 12 7 3.3303 0.1870 1.7320 13 6 4.1438 0.2554 2.8045 14 8 4.8997 1.1983 2.9347 15 6 4.1213 -0.8200 3.8194 16 6 3.2476 -1.9030 3.6728 17 6 3.2250 -2.9156 4.6149 18 6 4.0538 -2.8640 5.7140 19 6 4.9353 -1.7795 5.8815 20 6 5.7879 -1.7238 7.0086 21 1 6.0677 -2.6333 7.5195 22 6 6.2688 -0.4903 7.4619 23 7 5.6800 0.6175 7.0912 24 14 7.7515 -0.4256 8.5963 25 1 8.9917 -0.3304 7.7850 26 1 7.6463 0.7622 9.4812 27 1 7.7953 -1.6576 9.4245 28 6 4.9641 -0.7528 4.9227 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7654 1.0357 -2.1390 33 1 1.6164 2.7305 -1.5882 34 1 5.4460 1.2427 0.0567 35 1 4.4563 -0.0991 -0.6117 36 1 2.7273 -0.5657 1.6280 37 1 2.5908 -1.9510 2.8168 38 1 2.5502 -3.7496 4.4903 39 1 4.0269 -3.6560 6.4478 40 1 6.0135 1.4726 7.4051 41 1 5.6372 0.0834 5.0421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598031545.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:50 Heat of formation + Delta-G solvation = -120.818892 kcal Electronic energy + Delta-G solvation = -27268.841750 eV Core-core repulsion = 23241.319889 eV Total energy + Delta-G solvation = -4027.521861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -39.98395 -38.63719 -37.31148 -37.06596 -36.26364 -35.24976 -33.81199 -32.54414 -30.35278 -29.51342 -29.16454 -27.27855 -25.53643 -25.08726 -22.78179 -21.20413 -20.82778 -19.76723 -19.16544 -18.04192 -17.57236 -17.19326 -16.44705 -16.10839 -15.97608 -15.55476 -15.41345 -15.16242 -14.92086 -14.55365 -14.39590 -13.80181 -13.75723 -13.40449 -13.25359 -13.06039 -12.70849 -12.54899 -12.43402 -12.29074 -12.27661 -11.91587 -11.69129 -11.50231 -11.20432 -11.13482 -11.11856 -10.87952 -10.73750 -10.53077 -10.19761 -10.07439 -9.73728 -9.25772 -9.14289 -8.88733 -7.69359 -7.56896 -6.84294 -4.45554 -0.25437 2.10004 2.20209 2.77531 3.01491 3.05844 3.08928 3.12705 3.23272 3.48789 3.65908 3.79550 3.89094 4.15729 4.21426 4.31601 4.54247 4.61159 4.72726 4.92560 5.01150 5.09128 5.22587 5.31561 5.37218 5.55570 5.64224 5.78107 6.04619 6.23597 6.48534 6.67348 6.73162 6.93736 6.96296 7.16734 7.32927 7.65009 7.70055 7.87719 8.01958 8.13774 8.45845 8.75335 8.78253 8.82477 10.10447 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016332 B = 0.003027 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.994971 B = 9248.471936 C =10394.191808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.374 6.374 3 C 0.093 3.907 4 H 0.093 0.907 5 C -0.619 4.619 6 S 2.392 3.608 7 O -0.935 6.935 8 O -0.927 6.927 9 C -0.590 4.590 10 C 0.152 3.848 11 H 0.122 0.878 12 N -0.714 5.714 13 C 0.565 3.435 14 O -0.542 6.542 15 C -0.128 4.128 16 C -0.217 4.217 17 C -0.097 4.097 18 C -0.211 4.211 19 C 0.099 3.901 20 C -0.460 4.460 21 H 0.082 0.918 22 C 0.074 3.926 23 N -0.783 5.783 24 Si 0.911 3.089 25 H -0.266 1.266 26 H -0.277 1.277 27 H -0.262 1.262 28 C -0.091 4.091 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.093 0.907 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.412 0.588 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.285 0.715 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.761 1.435 -13.862 17.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.292 6.292 3 C 0.033 3.967 4 H 0.111 0.889 5 C -0.748 4.748 6 S 2.574 3.426 7 O -0.932 6.932 8 O -0.924 6.924 9 C -0.721 4.721 10 C 0.044 3.956 11 H 0.140 0.860 12 N -0.370 5.370 13 C 0.357 3.643 14 O -0.420 6.420 15 C -0.132 4.132 16 C -0.237 4.237 17 C -0.115 4.115 18 C -0.231 4.231 19 C 0.096 3.904 20 C -0.489 4.489 21 H 0.100 0.900 22 C -0.146 4.146 23 N -0.407 5.407 24 Si 0.735 3.265 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.186 1.186 28 C -0.111 4.111 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.251 0.749 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.617 2.752 -14.399 17.005 hybrid contribution -0.509 -0.522 0.953 1.200 sum -9.126 2.230 -13.446 16.403 Atomic orbital electron populations 1.22931 0.79970 1.03575 1.00519 1.87871 1.20642 1.26118 1.94525 1.22379 0.95952 0.86886 0.91527 0.88854 1.30996 1.26894 1.11714 1.05151 1.08998 0.79258 0.76903 0.77467 1.93619 1.80276 1.78772 1.40491 1.93657 1.81171 1.31788 1.85754 1.31106 1.08980 1.16298 1.15748 1.21345 0.89312 0.95929 0.89055 0.86006 1.45750 1.43918 1.25245 1.22119 1.18963 0.78623 0.86275 0.80481 1.90707 1.39617 1.34638 1.77037 1.19392 1.02238 0.95058 0.96463 1.20361 1.04625 0.97265 1.01487 1.20435 0.98846 0.97185 0.95082 1.21112 1.00596 1.01886 0.99501 1.17593 0.90276 0.90594 0.91940 1.19610 1.24864 0.93664 1.10718 0.90027 1.25964 0.97007 0.95137 0.96455 1.69779 1.34999 0.99285 1.36655 0.86264 0.81548 0.78817 0.79866 1.19108 1.20204 1.18568 1.21652 0.98331 1.00362 0.90804 0.93245 0.93649 0.88873 0.83134 0.83950 0.83517 0.83624 0.74872 0.89057 0.88880 0.88602 0.90390 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.78 101.05 1.09 1.26 16 2 O -0.37 -3.38 8.46 -35.23 -0.30 -3.68 16 3 C 0.09 0.80 3.00 -26.43 -0.08 0.72 16 4 H 0.09 0.66 7.77 -51.93 -0.40 0.26 16 5 C -0.62 -4.04 6.97 37.48 0.26 -3.78 16 6 S 2.39 23.07 6.05 -107.50 -0.65 22.42 16 7 O -0.93 -11.86 18.16 -57.69 -1.05 -12.91 16 8 O -0.93 -12.04 18.16 -57.69 -1.05 -13.08 16 9 C -0.59 -6.39 7.07 38.26 0.27 -6.12 16 10 C 0.15 1.84 2.75 -66.84 -0.18 1.65 16 11 H 0.12 1.55 7.56 -51.93 -0.39 1.16 16 12 N -0.71 -10.86 4.99 -53.68 -0.27 -11.12 16 13 C 0.57 11.62 7.76 -12.31 -0.10 11.52 16 14 O -0.54 -12.72 15.99 5.32 0.09 -12.64 16 15 C -0.13 -2.91 5.87 -105.04 -0.62 -3.53 16 16 C -0.22 -4.39 9.55 -38.92 -0.37 -4.76 16 17 C -0.10 -2.00 10.01 -39.73 -0.40 -2.40 16 18 C -0.21 -4.88 9.78 -38.81 -0.38 -5.26 16 19 C 0.10 2.54 5.57 -106.87 -0.60 1.95 16 20 C -0.46 -11.85 9.05 -37.73 -0.34 -12.19 16 21 H 0.08 2.00 7.91 -52.48 -0.42 1.59 16 22 C 0.07 1.83 5.14 -17.35 -0.09 1.74 16 23 N -0.78 -20.31 10.96 55.55 0.61 -19.70 16 24 Si 0.91 18.50 29.60 -169.99 -5.03 13.47 16 25 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 26 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 27 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 28 C -0.09 -2.37 8.24 -38.44 -0.32 -2.68 16 29 H 0.05 0.31 8.07 -51.93 -0.42 -0.11 16 30 H 0.04 0.22 8.09 -51.93 -0.42 -0.20 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.15 0.80 7.92 -51.93 -0.41 0.39 16 33 H 0.14 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.15 1.70 8.14 -51.93 -0.42 1.28 16 35 H 0.15 1.42 8.14 -51.93 -0.42 0.99 16 36 H 0.41 5.66 5.16 -40.82 -0.21 5.45 16 37 H 0.09 1.53 6.38 -52.48 -0.33 1.19 16 38 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.10 2.06 8.06 -52.48 -0.42 1.64 16 40 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 41 H 0.13 3.76 5.74 -52.48 -0.30 3.46 16 LS Contribution 356.79 15.07 5.38 5.38 Total: -1.00 -34.51 356.79 -9.10 -43.61 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -4.98 Total: 10.14 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -1.85 Total: -21.88 kcal Atomic # 7 Polarization: -31.17 SS G_CDS: 0.34 Total: -30.83 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -2.31 Total: -42.30 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Atomic # 16 Polarization: 23.07 SS G_CDS: -0.65 Total: 22.42 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.51 -9.10 -43.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598031545.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.213 kcal (2) G-P(sol) polarization free energy of solvation -34.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds