Wall clock time and date at job start Tue Mar 31 2020 22:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99973 * 2 1 4 4 H 1.09000 * 108.89634 * 31.31769 * 3 2 1 5 5 C 1.53614 * 108.93830 * 272.76539 * 3 2 1 6 6 S 1.83237 * 105.34864 * 241.62843 * 5 3 2 7 7 O 1.42106 * 109.61455 * 133.32287 * 6 5 3 8 8 O 1.42093 * 109.61484 * 267.09866 * 6 5 3 9 9 C 1.83749 * 95.25838 * 20.37502 * 6 5 3 10 10 C 1.52972 * 108.93301 * 149.99976 * 3 2 1 11 11 H 1.08998 * 109.65411 * 210.52719 * 10 3 2 12 12 N 1.46497 * 109.65269 * 330.97066 * 10 3 2 13 13 C 1.34782 * 120.00386 * 205.25676 * 12 10 3 14 14 O 1.21547 * 119.99663 * 359.97438 * 13 12 10 15 15 C 1.47880 * 120.00231 * 180.27667 * 13 12 10 16 16 C 1.39924 * 120.02579 * 359.44523 * 15 13 12 17 17 C 1.38333 * 120.35967 * 179.71563 * 16 15 13 18 18 C 1.37749 * 120.40786 * 0.56641 * 17 16 15 19 19 C 1.40752 * 120.04269 * 359.71558 * 18 17 16 20 20 C 1.41436 * 120.17992 * 180.02562 * 19 18 17 21 21 H 1.08003 * 120.00037 * 24.43491 * 20 19 18 22 22 C 1.39938 * 120.00036 * 204.44082 * 20 19 18 23 23 N 1.30821 * 120.00089 * 17.87618 * 22 20 19 24 24 Si 1.86807 * 120.00031 * 197.87867 * 22 20 19 25 25 H 1.48503 * 109.47052 * 89.99405 * 24 22 20 26 26 H 1.48493 * 109.46999 * 209.99853 * 24 22 20 27 27 H 1.48506 * 109.46922 * 329.99924 * 24 22 20 28 28 C 1.38999 * 120.02796 * 179.72532 * 15 13 12 29 29 H 1.08995 * 109.47290 * 299.99939 * 1 2 3 30 30 H 1.09000 * 109.46917 * 59.99803 * 1 2 3 31 31 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 32 32 H 1.09006 * 110.26996 * 0.59426 * 5 3 2 33 33 H 1.08999 * 110.27540 * 122.56554 * 5 3 2 34 34 H 1.08997 * 110.98988 * 205.96846 * 9 6 5 35 35 H 1.08995 * 111.12304 * 81.95571 * 9 6 5 36 36 H 0.97001 * 120.00233 * 25.25299 * 12 10 3 37 37 H 1.08004 * 119.81800 * 0.02562 * 16 15 13 38 38 H 1.07998 * 119.79481 * 180.28129 * 17 16 15 39 39 H 1.08003 * 119.97760 * 179.69651 * 18 17 16 40 40 H 0.97002 * 120.00407 * 180.02562 * 23 22 20 41 41 H 1.08006 * 120.19776 * 359.97404 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3489 1.9863 0.5360 5 6 2.1489 1.7894 -1.4513 6 16 3.9465 2.0308 -1.7123 7 8 4.3335 1.4375 -2.9443 8 8 4.2922 3.3802 -1.4321 9 6 4.4655 0.9508 -0.3192 10 6 3.3568 1.2492 0.7235 11 1 3.5546 2.2069 1.2050 12 7 3.3303 0.1870 1.7320 13 6 4.1438 0.2554 2.8045 14 8 4.8997 1.1983 2.9347 15 6 4.1213 -0.8200 3.8194 16 6 3.2476 -1.9030 3.6728 17 6 3.2250 -2.9156 4.6149 18 6 4.0538 -2.8640 5.7140 19 6 4.9353 -1.7795 5.8815 20 6 5.7879 -1.7238 7.0086 21 1 6.0677 -2.6333 7.5195 22 6 6.2688 -0.4903 7.4619 23 7 5.6800 0.6175 7.0912 24 14 7.7515 -0.4256 8.5963 25 1 8.9917 -0.3304 7.7850 26 1 7.6463 0.7622 9.4812 27 1 7.7953 -1.6576 9.4245 28 6 4.9641 -0.7528 4.9227 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7654 1.0357 -2.1390 33 1 1.6164 2.7305 -1.5882 34 1 5.4460 1.2427 0.0567 35 1 4.4563 -0.0991 -0.6117 36 1 2.7273 -0.5657 1.6280 37 1 2.5908 -1.9510 2.8168 38 1 2.5502 -3.7496 4.4903 39 1 4.0269 -3.6560 6.4478 40 1 6.0135 1.4726 7.4051 41 1 5.6372 0.0834 5.0421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598031545.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:48 Heat of formation + Delta-G solvation = -147.644240 kcal Electronic energy + Delta-G solvation = -27270.004984 eV Core-core repulsion = 23241.319889 eV Total energy + Delta-G solvation = -4028.685095 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.24065 -39.76101 -38.72885 -38.21523 -37.17815 -36.32845 -35.60985 -33.74107 -31.88352 -31.27326 -30.19191 -27.81847 -27.22732 -26.13808 -24.20592 -22.83066 -21.98047 -21.29834 -20.02106 -19.60825 -18.56328 -18.23214 -17.57696 -17.11234 -17.03293 -16.89242 -16.52988 -16.39737 -16.12565 -15.81986 -15.63852 -15.21130 -15.04809 -14.69192 -14.43248 -14.26337 -13.95742 -13.87261 -13.47917 -13.35211 -13.21219 -12.99742 -12.94459 -12.83002 -12.73771 -12.53334 -12.18649 -12.11996 -12.01669 -11.88354 -11.61875 -11.49737 -11.08268 -10.81803 -10.78220 -10.23126 -9.48068 -9.38269 -8.66953 -6.38090 -1.05105 0.36415 1.01198 1.36585 1.40751 1.48137 1.50481 2.02781 2.05608 2.18914 2.46727 2.61969 2.77738 2.92893 3.35817 3.42487 3.51515 3.70793 3.86012 3.97599 4.10264 4.37572 4.40249 4.47743 4.60361 4.60838 4.63318 4.69786 4.84040 4.91487 4.99777 5.09157 5.19490 5.30353 5.34028 5.52118 5.86628 5.92907 6.02625 6.05885 6.29077 6.51232 6.68098 6.88258 6.94705 7.27523 8.29762 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016332 B = 0.003027 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.994971 B = 9248.471936 C =10394.191808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.389 6.389 3 C 0.095 3.905 4 H 0.117 0.883 5 C -0.584 4.584 6 S 2.412 3.588 7 O -0.965 6.965 8 O -0.964 6.964 9 C -0.600 4.600 10 C 0.138 3.862 11 H 0.110 0.890 12 N -0.690 5.690 13 C 0.563 3.437 14 O -0.583 6.583 15 C -0.139 4.139 16 C -0.195 4.195 17 C -0.095 4.095 18 C -0.217 4.217 19 C 0.067 3.933 20 C -0.499 4.499 21 H 0.083 0.917 22 C 0.031 3.969 23 N -0.824 5.824 24 Si 0.981 3.019 25 H -0.267 1.267 26 H -0.269 1.269 27 H -0.251 1.251 28 C -0.131 4.131 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.176 0.824 33 H 0.179 0.821 34 H 0.128 0.872 35 H 0.157 0.843 36 H 0.421 0.579 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.107 0.893 40 H 0.286 0.714 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.704 0.267 -15.665 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.307 6.307 3 C 0.035 3.965 4 H 0.135 0.865 5 C -0.716 4.716 6 S 2.597 3.403 7 O -0.962 6.962 8 O -0.961 6.961 9 C -0.730 4.730 10 C 0.030 3.970 11 H 0.128 0.872 12 N -0.346 5.346 13 C 0.353 3.647 14 O -0.464 6.464 15 C -0.142 4.142 16 C -0.215 4.215 17 C -0.113 4.113 18 C -0.237 4.237 19 C 0.065 3.935 20 C -0.528 4.528 21 H 0.101 0.899 22 C -0.184 4.184 23 N -0.449 5.449 24 Si 0.802 3.198 25 H -0.192 1.192 26 H -0.194 1.194 27 H -0.174 1.174 28 C -0.151 4.151 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.194 0.806 33 H 0.197 0.803 34 H 0.146 0.854 35 H 0.175 0.825 36 H 0.263 0.737 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.126 0.874 40 H 0.097 0.903 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.564 1.553 -16.241 19.998 hybrid contribution 0.182 -0.260 1.342 1.379 sum -11.382 1.293 -14.899 18.794 Atomic orbital electron populations 1.23162 0.78373 1.04636 1.01686 1.87845 1.22300 1.25914 1.94653 1.22320 0.93963 0.87765 0.92433 0.86536 1.30834 1.22254 1.14381 1.04171 1.08265 0.80905 0.75257 0.75898 1.93576 1.82125 1.78974 1.41547 1.93608 1.83038 1.33609 1.85894 1.31129 1.07965 1.17551 1.16340 1.21653 0.92280 0.94238 0.88806 0.87232 1.45466 1.42067 1.26078 1.20978 1.18765 0.79153 0.85339 0.81476 1.90687 1.41568 1.35990 1.78145 1.19733 1.01826 0.96529 0.96127 1.20861 1.03071 0.95362 1.02188 1.20920 0.98355 0.98344 0.93685 1.21416 1.00305 1.01162 1.00774 1.17930 0.91502 0.91773 0.92279 1.19873 1.26852 0.94281 1.11771 0.89884 1.26812 0.99347 0.94414 0.97806 1.69876 1.36737 0.99820 1.38514 0.85215 0.77463 0.79285 0.77858 1.19220 1.19394 1.17414 1.21456 1.00154 1.00428 0.93101 0.93086 0.91524 0.87999 0.80613 0.80329 0.85363 0.82513 0.73709 0.84562 0.84357 0.87443 0.90297 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.78 113.37 1.22 1.36 16 2 O -0.39 -5.28 8.46 -148.98 -1.26 -6.54 16 3 C 0.10 1.28 3.00 30.79 0.09 1.37 16 4 H 0.12 1.12 7.77 -2.39 -0.02 1.10 16 5 C -0.58 -5.01 6.97 72.19 0.50 -4.51 16 6 S 2.41 43.33 6.05 -56.49 -0.34 42.99 16 7 O -0.97 -23.37 18.16 -127.50 -2.32 -25.69 16 8 O -0.96 -24.73 18.16 -127.50 -2.32 -27.05 16 9 C -0.60 -12.80 7.07 72.70 0.51 -12.29 16 10 C 0.14 3.15 2.75 45.70 0.13 3.28 16 11 H 0.11 2.81 7.56 -2.39 -0.02 2.79 16 12 N -0.69 -20.03 4.99 -442.02 -2.21 -22.23 16 13 C 0.56 23.49 7.76 86.80 0.67 24.16 16 14 O -0.58 -28.85 15.99 -3.86 -0.06 -28.91 16 15 C -0.14 -6.37 5.87 -20.13 -0.12 -6.49 16 16 C -0.20 -7.37 9.55 22.70 0.22 -7.15 16 17 C -0.10 -3.64 10.01 22.18 0.22 -3.42 16 18 C -0.22 -9.93 9.78 22.77 0.22 -9.70 16 19 C 0.07 3.61 5.57 -21.32 -0.12 3.50 16 20 C -0.50 -26.95 9.05 23.47 0.21 -26.74 16 21 H 0.08 4.25 7.91 -2.91 -0.02 4.22 16 22 C 0.03 1.63 5.14 85.26 0.44 2.06 16 23 N -0.82 -45.53 10.96 21.82 0.24 -45.29 16 24 Si 0.98 39.51 29.60 68.60 2.03 41.54 16 25 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 26 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 27 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 28 C -0.13 -7.14 8.24 23.01 0.19 -6.95 16 29 H 0.05 0.41 8.07 -2.39 -0.02 0.39 16 30 H 0.07 0.28 8.09 -2.39 -0.02 0.26 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.18 0.84 7.92 -2.38 -0.02 0.83 16 33 H 0.18 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.13 3.20 8.14 -2.39 -0.02 3.18 16 35 H 0.16 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.42 10.28 5.16 -92.71 -0.48 9.80 16 37 H 0.14 3.88 6.38 -2.91 -0.02 3.86 16 38 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 39 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 40 H 0.29 14.60 8.30 -92.71 -0.77 13.83 16 41 H 0.10 6.06 5.74 -2.91 -0.02 6.04 16 Total: -1.00 -81.08 356.79 -1.24 -82.32 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.60 Total: 30.40 kcal Atomic # 6 Polarization: -45.92 SS G_CDS: 4.40 Total: -41.53 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: -1.97 Total: -67.53 kcal Atomic # 8 Polarization: -82.24 SS G_CDS: -5.95 Total: -88.19 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Atomic # 16 Polarization: 43.33 SS G_CDS: -0.34 Total: 42.99 kcal Total: -81.08 -1.24 -82.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598031545.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.327 kcal (2) G-P(sol) polarization free energy of solvation -81.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds