Wall clock time and date at job start Tue Mar 31 2020 22:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34227 * 116.99964 * 2 1 4 4 O 1.20823 * 120.00139 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99641 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.87565 * 301.01951 * 5 3 2 7 7 C 1.54323 * 110.01148 * 62.11775 * 5 3 2 8 8 C 1.55155 * 102.94068 * 141.67836 * 7 5 3 9 9 C 1.55128 * 101.48923 * 324.33368 * 8 7 5 10 10 N 1.47021 * 109.88068 * 180.02562 * 5 3 2 11 11 S 1.65600 * 125.65191 * 61.44776 * 10 5 3 12 12 O 1.42101 * 106.40141 * 343.45008 * 11 10 5 13 13 O 1.42098 * 106.40396 * 210.53232 * 11 10 5 14 14 C 1.76196 * 107.21633 * 96.98940 * 11 10 5 15 15 C 1.37654 * 120.12643 * 113.58457 * 14 11 10 16 16 C 1.38612 * 120.24515 * 180.25802 * 15 14 11 17 17 C 1.38655 * 120.50375 * 359.76178 * 16 15 14 18 18 C 1.37605 * 120.24983 * 359.97438 * 17 16 15 19 19 C 1.40698 * 120.13204 * 293.32959 * 14 11 10 20 20 C 1.41396 * 120.24227 * 359.97438 * 19 14 11 21 21 H 1.08002 * 119.99977 * 326.81443 * 20 19 14 22 22 C 1.39942 * 120.00035 * 146.80550 * 20 19 14 23 23 N 1.30824 * 120.00039 * 337.33045 * 22 20 19 24 24 Si 1.86798 * 120.00102 * 157.32774 * 22 20 19 25 25 H 1.48500 * 109.47183 * 90.00169 * 24 22 20 26 26 H 1.48506 * 109.47123 * 330.00292 * 24 22 20 27 27 H 1.48501 * 109.47461 * 210.00450 * 24 22 20 28 28 H 1.09003 * 109.47526 * 59.99554 * 1 2 3 29 29 H 1.08995 * 109.47822 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46916 * 299.99678 * 1 2 3 31 31 H 1.08998 * 110.71801 * 260.04547 * 7 5 3 32 32 H 1.08995 * 110.71756 * 23.14023 * 7 5 3 33 33 H 1.09003 * 110.99929 * 82.57640 * 8 7 5 34 34 H 1.08998 * 111.00496 * 206.41472 * 8 7 5 35 35 H 1.08992 * 110.49469 * 278.45342 * 9 8 7 36 36 H 1.08998 * 110.34014 * 156.05365 * 9 8 7 37 37 H 1.07994 * 119.87484 * 0.02562 * 15 14 11 38 38 H 1.07993 * 119.74549 * 179.73950 * 16 15 14 39 39 H 1.07997 * 119.87518 * 180.02562 * 17 16 15 40 40 H 1.07990 * 120.12501 * 180.02562 * 18 17 16 41 41 H 0.96997 * 119.99786 * 354.22183 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9644 0.7664 0.8776 7 6 4.1287 0.6254 -1.2827 8 6 5.3152 1.5548 -1.6512 9 6 4.7633 2.9421 -1.2303 10 7 3.9933 2.6816 0.0002 11 16 3.6587 3.7912 1.1830 12 8 2.5948 3.2485 1.9529 13 8 3.5853 5.0553 0.5381 14 6 5.0607 3.8567 2.2482 15 6 5.8246 4.9998 2.3153 16 6 6.9312 5.0522 3.1485 17 6 7.2787 3.9585 3.9265 18 6 6.5264 2.8072 3.8796 19 6 5.4006 2.7428 3.0376 20 6 4.6198 1.5653 2.9815 21 1 3.5552 1.6308 2.8119 22 6 5.2265 0.3149 3.1455 23 7 6.5055 0.1725 2.9101 24 14 4.2102 -1.1507 3.7008 25 1 3.6602 -1.8506 2.5121 26 1 3.0932 -0.6817 4.5597 27 1 5.0690 -2.0851 4.4720 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 4.4797 -0.3865 -1.0804 32 1 3.3787 0.6211 -2.0735 33 1 6.2066 1.2954 -1.0799 34 1 5.5170 1.5248 -2.7219 35 1 4.1132 3.3457 -2.0065 36 1 5.5836 3.6300 -1.0257 37 1 5.5631 5.8577 1.7137 38 1 7.5273 5.9517 3.1916 39 1 8.1427 4.0105 4.5725 40 1 6.7986 1.9567 4.4868 41 1 7.0160 0.9106 2.5422 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601297532.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:14 Heat of formation + Delta-G solvation = -138.811545 kcal Electronic energy + Delta-G solvation = -29678.790937 eV Core-core repulsion = 25650.488857 eV Total energy + Delta-G solvation = -4028.302081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.30536 -37.97656 -37.80269 -36.36674 -35.90687 -34.83113 -34.14067 -30.64601 -30.22530 -29.86439 -29.55423 -27.23234 -25.39623 -23.24475 -21.90006 -21.39297 -21.21512 -20.63410 -18.48626 -18.28810 -17.42516 -17.20835 -16.39143 -16.07605 -15.71330 -15.44124 -14.87778 -14.60895 -14.18966 -13.89422 -13.58124 -13.45097 -13.41587 -12.99053 -12.85504 -12.74060 -12.50108 -12.32465 -11.91648 -11.63072 -11.51376 -11.27901 -11.21397 -11.16628 -11.07127 -11.03938 -10.87532 -10.69955 -10.57066 -10.51631 -10.48322 -10.08129 -9.90614 -9.37979 -9.23447 -8.60300 -8.27458 -7.85853 -7.50532 -4.92537 1.34909 2.16654 2.56700 2.61176 2.93990 3.04558 3.11936 3.27783 3.79216 3.81846 4.26332 4.59487 4.67865 4.76647 5.01970 5.11227 5.24575 5.27603 5.36931 5.39368 5.54319 5.64387 5.72609 5.83018 5.85908 5.91399 5.96931 6.00375 6.12769 6.21438 6.33023 6.42778 6.52104 6.65890 6.77750 6.89397 7.09755 7.23466 7.34539 7.52275 7.61924 7.77125 7.92715 8.10850 8.33336 8.52150 9.73594 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010487 B = 0.007538 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.285747 B = 3713.596004 C = 4944.565878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.449 3.551 4 O -0.490 6.490 5 C 0.158 3.842 6 H 0.137 0.863 7 C -0.113 4.113 8 C -0.127 4.127 9 C 0.122 3.878 10 N -0.986 5.986 11 S 2.723 3.277 12 O -0.954 6.954 13 O -0.989 6.989 14 C -0.781 4.781 15 C 0.009 3.991 16 C -0.256 4.256 17 C -0.057 4.057 18 C -0.204 4.204 19 C 0.176 3.824 20 C -0.538 4.538 21 H 0.113 0.887 22 C 0.045 3.955 23 N -0.777 5.777 24 Si 1.048 2.952 25 H -0.264 1.264 26 H -0.269 1.269 27 H -0.269 1.269 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.984 -4.589 -7.755 9.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.289 3.711 4 O -0.375 6.375 5 C 0.050 3.950 6 H 0.155 0.845 7 C -0.152 4.152 8 C -0.166 4.166 9 C -0.003 4.003 10 N -0.820 5.820 11 S 2.822 3.178 12 O -0.945 6.945 13 O -0.980 6.980 14 C -0.875 4.875 15 C -0.011 4.011 16 C -0.276 4.276 17 C -0.076 4.076 18 C -0.224 4.224 19 C 0.171 3.829 20 C -0.565 4.565 21 H 0.131 0.869 22 C -0.179 4.179 23 N -0.399 5.399 24 Si 0.870 3.130 25 H -0.188 1.188 26 H -0.193 1.193 27 H -0.194 1.194 28 H 0.077 0.923 29 H 0.116 0.884 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.128 0.872 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.889 -5.341 -7.252 9.458 hybrid contribution 0.517 1.696 0.107 1.776 sum -2.373 -3.645 -7.145 8.365 Atomic orbital electron populations 1.23223 0.76964 1.03207 1.02553 1.86487 1.22966 1.33412 1.84564 1.24374 0.92590 0.81569 0.72517 1.90642 1.66785 1.36281 1.43840 1.21122 0.85864 0.84386 1.03639 0.84537 1.22558 0.97956 1.00000 0.94724 1.22840 0.98215 0.93948 1.01621 1.21994 0.94644 0.97622 0.86079 1.58630 1.67739 1.21126 1.34530 1.00618 0.74051 0.71075 0.72046 1.93483 1.53087 1.78586 1.69348 1.93433 1.87656 1.40650 1.76278 1.30055 1.28235 1.04945 1.24282 1.20355 0.91971 0.94694 0.94090 1.20501 1.01661 0.99098 1.06342 1.20873 0.96920 0.93556 0.96238 1.21353 1.00005 0.98081 1.02936 1.17028 0.89712 0.90234 0.85897 1.21417 0.99246 0.91892 1.43961 0.86931 1.27073 0.96316 1.02270 0.92276 1.70451 1.07719 1.37282 1.24410 0.83876 0.76005 0.74284 0.78843 1.18839 1.19306 1.19368 0.92298 0.88369 0.91700 0.88759 0.90644 0.89697 0.89938 0.91578 0.90345 0.87225 0.88319 0.88462 0.87234 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 101.05 1.07 1.51 16 2 O -0.36 -5.90 10.54 -39.25 -0.41 -6.31 16 3 C 0.45 8.66 6.57 36.01 0.24 8.89 16 4 O -0.49 -10.83 13.92 -25.99 -0.36 -11.19 16 5 C 0.16 2.89 3.18 -68.10 -0.22 2.67 16 6 H 0.14 2.69 5.25 -51.93 -0.27 2.42 16 7 C -0.11 -1.51 6.45 -24.90 -0.16 -1.67 16 8 C -0.13 -1.59 7.10 -24.47 -0.17 -1.76 16 9 C 0.12 1.90 7.07 -2.39 -0.02 1.88 16 10 N -0.99 -19.44 3.12 -105.48 -0.33 -19.76 16 11 S 2.72 64.24 4.80 -107.50 -0.52 63.72 16 12 O -0.95 -24.85 12.77 -66.14 -0.84 -25.70 16 13 O -0.99 -24.34 16.65 -57.17 -0.95 -25.30 16 14 C -0.78 -18.81 5.97 -38.87 -0.23 -19.04 16 15 C 0.01 0.20 9.54 -39.66 -0.38 -0.18 16 16 C -0.26 -5.44 10.05 -39.29 -0.39 -5.84 16 17 C -0.06 -1.22 10.02 -39.66 -0.40 -1.62 16 18 C -0.20 -4.82 7.99 -38.87 -0.31 -5.13 16 19 C 0.18 4.36 5.13 -106.83 -0.55 3.81 16 20 C -0.54 -13.06 6.02 -37.74 -0.23 -13.29 16 21 H 0.11 2.87 5.23 -52.49 -0.27 2.59 16 22 C 0.05 1.02 4.48 -17.34 -0.08 0.94 16 23 N -0.78 -17.92 12.56 55.55 0.70 -17.23 16 24 Si 1.05 19.93 29.99 -169.99 -5.10 14.83 16 25 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 26 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 27 H -0.27 -5.01 7.11 56.52 0.40 -4.60 16 28 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 29 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.89 7.85 -51.93 -0.41 0.48 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.11 2.32 7.32 -52.49 -0.38 1.93 16 38 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 40 H 0.11 2.59 6.98 -52.49 -0.37 2.23 16 41 H 0.30 7.10 6.81 -40.82 -0.28 6.83 16 LS Contribution 346.47 15.07 5.22 5.22 Total: -1.00 -31.20 346.47 -9.43 -40.64 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -5.01 Total: 9.90 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: -1.83 Total: -28.82 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.37 Total: -36.99 kcal Atomic # 8 Polarization: -65.93 SS G_CDS: -2.57 Total: -68.50 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.10 Total: 14.83 kcal Atomic # 16 Polarization: 64.24 SS G_CDS: -0.52 Total: 63.72 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.20 -9.43 -40.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601297532.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.175 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds