Wall clock time and date at job start Tue Mar 31 2020 22:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34227 * 116.99964 * 2 1 4 4 O 1.20823 * 120.00139 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99641 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.87565 * 301.01951 * 5 3 2 7 7 C 1.54323 * 110.01148 * 62.11775 * 5 3 2 8 8 C 1.55155 * 102.94068 * 141.67836 * 7 5 3 9 9 C 1.55128 * 101.48923 * 324.33368 * 8 7 5 10 10 N 1.47021 * 109.88068 * 180.02562 * 5 3 2 11 11 S 1.65600 * 125.65191 * 61.44776 * 10 5 3 12 12 O 1.42101 * 106.40141 * 343.45008 * 11 10 5 13 13 O 1.42098 * 106.40396 * 210.53232 * 11 10 5 14 14 C 1.76196 * 107.21633 * 96.98940 * 11 10 5 15 15 C 1.37654 * 120.12643 * 113.58457 * 14 11 10 16 16 C 1.38612 * 120.24515 * 180.25802 * 15 14 11 17 17 C 1.38655 * 120.50375 * 359.76178 * 16 15 14 18 18 C 1.37605 * 120.24983 * 359.97438 * 17 16 15 19 19 C 1.40698 * 120.13204 * 293.32959 * 14 11 10 20 20 C 1.41396 * 120.24227 * 359.97438 * 19 14 11 21 21 H 1.08002 * 119.99977 * 326.81443 * 20 19 14 22 22 C 1.39942 * 120.00035 * 146.80550 * 20 19 14 23 23 N 1.30824 * 120.00039 * 337.33045 * 22 20 19 24 24 Si 1.86798 * 120.00102 * 157.32774 * 22 20 19 25 25 H 1.48500 * 109.47183 * 90.00169 * 24 22 20 26 26 H 1.48506 * 109.47123 * 330.00292 * 24 22 20 27 27 H 1.48501 * 109.47461 * 210.00450 * 24 22 20 28 28 H 1.09003 * 109.47526 * 59.99554 * 1 2 3 29 29 H 1.08995 * 109.47822 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46916 * 299.99678 * 1 2 3 31 31 H 1.08998 * 110.71801 * 260.04547 * 7 5 3 32 32 H 1.08995 * 110.71756 * 23.14023 * 7 5 3 33 33 H 1.09003 * 110.99929 * 82.57640 * 8 7 5 34 34 H 1.08998 * 111.00496 * 206.41472 * 8 7 5 35 35 H 1.08992 * 110.49469 * 278.45342 * 9 8 7 36 36 H 1.08998 * 110.34014 * 156.05365 * 9 8 7 37 37 H 1.07994 * 119.87484 * 0.02562 * 15 14 11 38 38 H 1.07993 * 119.74549 * 179.73950 * 16 15 14 39 39 H 1.07997 * 119.87518 * 180.02562 * 17 16 15 40 40 H 1.07990 * 120.12501 * 180.02562 * 18 17 16 41 41 H 0.96997 * 119.99786 * 354.22183 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9644 0.7664 0.8776 7 6 4.1287 0.6254 -1.2827 8 6 5.3152 1.5548 -1.6512 9 6 4.7633 2.9421 -1.2303 10 7 3.9933 2.6816 0.0002 11 16 3.6587 3.7912 1.1830 12 8 2.5948 3.2485 1.9529 13 8 3.5853 5.0553 0.5381 14 6 5.0607 3.8567 2.2482 15 6 5.8246 4.9998 2.3153 16 6 6.9312 5.0522 3.1485 17 6 7.2787 3.9585 3.9265 18 6 6.5264 2.8072 3.8796 19 6 5.4006 2.7428 3.0376 20 6 4.6198 1.5653 2.9815 21 1 3.5552 1.6308 2.8119 22 6 5.2265 0.3149 3.1455 23 7 6.5055 0.1725 2.9101 24 14 4.2102 -1.1507 3.7008 25 1 3.6602 -1.8506 2.5121 26 1 3.0932 -0.6817 4.5597 27 1 5.0690 -2.0851 4.4720 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 4.4797 -0.3865 -1.0804 32 1 3.3787 0.6211 -2.0735 33 1 6.2066 1.2954 -1.0799 34 1 5.5170 1.5248 -2.7219 35 1 4.1132 3.3457 -2.0065 36 1 5.5836 3.6300 -1.0257 37 1 5.5631 5.8577 1.7137 38 1 7.5273 5.9517 3.1916 39 1 8.1427 4.0105 4.5725 40 1 6.7986 1.9567 4.4868 41 1 7.0160 0.9106 2.5422 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601297532.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:12 Heat of formation + Delta-G solvation = -158.030607 kcal Electronic energy + Delta-G solvation = -29679.624338 eV Core-core repulsion = 25650.488857 eV Total energy + Delta-G solvation = -4029.135482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.71263 -39.67949 -39.15034 -38.21581 -37.37749 -36.73459 -35.89196 -32.07178 -31.86304 -31.33226 -31.12426 -28.34148 -27.17390 -24.56984 -23.63723 -23.06748 -22.48111 -22.02569 -20.21446 -19.89665 -18.94745 -18.81268 -17.93103 -17.63156 -17.07565 -17.02756 -16.57737 -16.13161 -15.78125 -15.57672 -15.18266 -14.87870 -14.71951 -14.54362 -14.37348 -14.12442 -14.04235 -13.72164 -13.40243 -13.10264 -13.06295 -13.04078 -12.86167 -12.77087 -12.72085 -12.54236 -12.28189 -12.14184 -12.03049 -11.81636 -11.78929 -11.63032 -11.44520 -11.10965 -10.95597 -10.13515 -10.00197 -9.65584 -9.30170 -6.74851 -0.39495 0.36836 0.81918 1.13806 1.49383 1.58142 1.63610 1.78895 2.18639 2.24027 2.54435 2.98755 3.26025 3.30478 3.47039 3.76920 3.92148 4.12452 4.16681 4.29807 4.30827 4.31750 4.34692 4.53053 4.57403 4.64839 4.69485 4.74979 4.84032 4.92265 4.97071 5.05478 5.09567 5.28995 5.31162 5.32107 5.43119 5.45652 5.58410 5.74739 5.80270 5.96713 6.14133 6.54383 6.69031 6.71681 7.93046 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010487 B = 0.007538 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.285747 B = 3713.596004 C = 4944.565878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.355 6.355 3 C 0.448 3.552 4 O -0.528 6.528 5 C 0.147 3.853 6 H 0.120 0.880 7 C -0.105 4.105 8 C -0.113 4.113 9 C 0.106 3.894 10 N -0.990 5.990 11 S 2.730 3.270 12 O -0.989 6.989 13 O -1.010 7.010 14 C -0.798 4.798 15 C -0.008 4.008 16 C -0.251 4.251 17 C -0.053 4.053 18 C -0.224 4.224 19 C 0.154 3.846 20 C -0.552 4.552 21 H 0.094 0.906 22 C 0.027 3.973 23 N -0.781 5.781 24 Si 1.077 2.923 25 H -0.236 1.236 26 H -0.278 1.278 27 H -0.259 1.259 28 H 0.067 0.933 29 H 0.142 0.858 30 H 0.049 0.951 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.124 0.876 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.103 0.897 41 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.012 -5.986 -9.019 10.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.290 3.710 4 O -0.417 6.417 5 C 0.039 3.961 6 H 0.137 0.863 7 C -0.144 4.144 8 C -0.152 4.152 9 C -0.018 4.018 10 N -0.827 5.827 11 S 2.830 3.170 12 O -0.980 6.980 13 O -1.001 7.001 14 C -0.892 4.892 15 C -0.028 4.028 16 C -0.271 4.271 17 C -0.072 4.072 18 C -0.244 4.244 19 C 0.149 3.851 20 C -0.579 4.579 21 H 0.112 0.888 22 C -0.194 4.194 23 N -0.402 5.402 24 Si 0.894 3.106 25 H -0.159 1.159 26 H -0.204 1.204 27 H -0.183 1.183 28 H 0.086 0.914 29 H 0.160 0.840 30 H 0.067 0.933 31 H 0.133 0.867 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.142 0.858 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.137 0.863 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.121 0.879 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.903 -6.740 -8.529 11.036 hybrid contribution 0.207 2.190 0.497 2.255 sum -1.696 -4.550 -8.032 9.385 Atomic orbital electron populations 1.23599 0.74939 1.05983 1.02270 1.86470 1.24933 1.31819 1.83859 1.24639 0.93105 0.81746 0.71522 1.90621 1.67640 1.37594 1.45830 1.21371 0.85557 0.83637 1.05579 0.86305 1.22677 0.98495 1.00611 0.92634 1.22844 0.97230 0.91139 1.03967 1.22396 0.94660 0.99985 0.84769 1.58310 1.68260 1.21358 1.34759 1.00051 0.73662 0.71065 0.72210 1.93429 1.54752 1.79131 1.70685 1.93389 1.87961 1.42104 1.76608 1.30209 1.28517 1.05566 1.24937 1.20651 0.92625 0.94648 0.94881 1.20921 1.01084 1.00208 1.04857 1.21255 0.97284 0.92576 0.96040 1.21395 1.00634 0.98969 1.03398 1.17296 0.90540 0.90728 0.86487 1.21354 0.98326 0.92791 1.45400 0.88811 1.27976 0.96518 1.03512 0.91442 1.70521 1.07904 1.36745 1.25017 0.83537 0.74903 0.72529 0.79594 1.15930 1.20368 1.18288 0.91439 0.84024 0.93256 0.86709 0.88667 0.90343 0.85763 0.90364 0.90429 0.86270 0.84851 0.85040 0.87937 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.81 16 2 O -0.36 -11.32 10.54 -51.38 -0.54 -11.86 16 3 C 0.45 17.28 6.57 71.24 0.47 17.75 16 4 O -0.53 -23.94 13.92 28.90 0.40 -23.53 16 5 C 0.15 5.32 3.18 44.60 0.14 5.46 16 6 H 0.12 4.74 5.25 -2.39 -0.01 4.73 16 7 C -0.11 -2.55 6.45 31.78 0.20 -2.34 16 8 C -0.11 -2.51 7.10 32.06 0.23 -2.29 16 9 C 0.11 3.20 7.07 86.92 0.61 3.81 16 10 N -0.99 -39.41 3.12 -487.62 -1.52 -40.94 16 11 S 2.73 133.12 4.80 -56.49 -0.27 132.84 16 12 O -0.99 -54.05 12.77 -119.43 -1.52 -55.58 16 13 O -1.01 -51.12 16.65 -128.00 -2.13 -53.25 16 14 C -0.80 -39.31 5.97 22.73 0.14 -39.18 16 15 C -0.01 -0.37 9.54 22.22 0.21 -0.16 16 16 C -0.25 -10.24 10.05 22.46 0.23 -10.01 16 17 C -0.05 -2.20 10.02 22.22 0.22 -1.98 16 18 C -0.22 -10.64 7.99 22.73 0.18 -10.46 16 19 C 0.15 7.81 5.13 -21.29 -0.11 7.70 16 20 C -0.55 -27.53 6.02 23.46 0.14 -27.39 16 21 H 0.09 5.00 5.23 -2.91 -0.02 4.99 16 22 C 0.03 1.23 4.48 85.26 0.38 1.61 16 23 N -0.78 -35.97 12.56 21.83 0.27 -35.70 16 24 Si 1.08 39.54 29.99 68.60 2.06 41.60 16 25 H -0.24 -7.58 7.11 99.48 0.71 -6.88 16 26 H -0.28 -10.59 7.11 99.48 0.71 -9.89 16 27 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 28 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16 29 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.05 1.36 8.13 -2.38 -0.02 1.34 16 31 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.09 1.94 7.85 -2.39 -0.02 1.92 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.12 5.04 7.32 -2.91 -0.02 5.02 16 38 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 40 H 0.10 4.91 6.98 -2.92 -0.02 4.89 16 41 H 0.29 13.90 6.81 -92.71 -0.63 13.26 16 Total: -1.00 -70.30 346.47 2.19 -68.11 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 1.20 Total: 33.96 kcal Atomic # 6 Polarization: -59.91 SS G_CDS: 4.24 Total: -55.66 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -1.25 Total: -76.64 kcal Atomic # 8 Polarization: -140.42 SS G_CDS: -3.79 Total: -144.22 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.06 Total: 41.60 kcal Atomic # 16 Polarization: 133.12 SS G_CDS: -0.27 Total: 132.84 kcal Total: -70.30 2.19 -68.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601297532.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.916 kcal (2) G-P(sol) polarization free energy of solvation -70.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds