Wall clock time and date at job start Tue Mar 31 2020 22:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34228 * 117.00359 * 2 1 4 4 O 1.20823 * 120.00106 * 354.95897 * 3 2 1 5 5 C 1.50705 * 120.00231 * 174.95576 * 3 2 1 6 6 H 1.09008 * 109.87198 * 34.41206 * 5 3 2 7 7 C 1.54320 * 110.01048 * 273.31791 * 5 3 2 8 8 C 1.55164 * 102.93791 * 218.31570 * 7 5 3 9 9 C 1.54691 * 101.67932 * 35.33595 * 8 7 5 10 10 N 1.47021 * 109.88148 * 155.42515 * 5 3 2 11 11 S 1.65596 * 125.65246 * 298.47779 * 10 5 3 12 12 O 1.42095 * 106.40301 * 163.36994 * 11 10 5 13 13 O 1.42102 * 106.40167 * 30.44971 * 11 10 5 14 14 C 1.76197 * 107.21738 * 276.90870 * 11 10 5 15 15 C 1.37637 * 120.12839 * 112.87234 * 14 11 10 16 16 C 1.38617 * 120.25238 * 179.97438 * 15 14 11 17 17 C 1.38656 * 120.49511 * 0.02562 * 16 15 14 18 18 C 1.37598 * 120.25301 * 359.97438 * 17 16 15 19 19 C 1.40701 * 120.12828 * 293.12366 * 14 11 10 20 20 C 1.41392 * 120.24618 * 0.02681 * 19 14 11 21 21 H 1.08002 * 119.99683 * 326.13151 * 20 19 14 22 22 C 1.39938 * 120.00414 * 146.12347 * 20 19 14 23 23 N 1.30825 * 120.00223 * 167.30803 * 22 20 19 24 24 Si 1.86809 * 119.99743 * 347.31297 * 22 20 19 25 25 H 1.48497 * 109.47042 * 87.62891 * 24 22 20 26 26 H 1.48506 * 109.46959 * 207.62493 * 24 22 20 27 27 H 1.48502 * 109.47118 * 327.62515 * 24 22 20 28 28 H 1.09000 * 109.47475 * 184.81392 * 1 2 3 29 29 H 1.09004 * 109.46920 * 304.81429 * 1 2 3 30 30 H 1.09000 * 109.47348 * 64.81192 * 1 2 3 31 31 H 1.08999 * 110.71798 * 336.67663 * 7 5 3 32 32 H 1.08995 * 110.72179 * 99.95608 * 7 5 3 33 33 H 1.09002 * 110.99960 * 153.57536 * 8 7 5 34 34 H 1.08993 * 111.00371 * 277.38586 * 8 7 5 35 35 H 1.08998 * 110.39300 * 204.36851 * 9 8 7 36 36 H 1.08992 * 110.23518 * 82.10954 * 9 8 7 37 37 H 1.07999 * 119.87707 * 0.02562 * 15 14 11 38 38 H 1.07990 * 119.75456 * 180.02562 * 16 15 14 39 39 H 1.08003 * 119.87486 * 180.02562 * 17 16 15 40 40 H 1.07997 * 120.12554 * 179.97438 * 18 17 16 41 41 H 0.97004 * 119.99563 * 185.01177 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4070 2.2075 -0.0919 5 6 3.5619 1.2771 0.1148 6 1 4.0190 0.4300 -0.3970 7 6 3.9785 1.2796 1.6007 8 6 5.1613 2.2835 1.6281 9 6 4.7140 3.3233 0.5737 10 7 4.0411 2.5356 -0.4752 11 16 3.8612 2.9899 -2.0574 12 8 4.1036 4.3893 -2.1031 13 8 2.6529 2.3952 -2.5108 14 6 5.1629 2.2296 -2.9696 15 6 4.8781 1.2511 -3.8948 16 6 5.9001 0.6516 -4.6142 17 6 7.2188 1.0288 -4.4110 18 6 7.5269 2.0047 -3.4912 19 6 6.4979 2.6165 -2.7513 20 6 6.8030 3.6164 -1.7993 21 1 6.1187 4.4365 -1.6393 22 6 7.9915 3.5433 -1.0641 23 7 8.3973 4.5768 -0.3723 24 14 8.9986 1.9700 -1.0709 25 1 9.9416 1.9908 -2.2178 26 1 9.7641 1.8668 0.1975 27 1 8.0908 0.8016 -1.1975 28 1 -0.3634 -1.0240 0.0862 29 1 -0.3633 0.5867 0.8438 30 1 -0.3634 0.4374 -0.9299 31 1 3.1604 1.6301 2.2299 32 1 4.3073 0.2877 1.9106 33 1 5.2624 2.7411 2.6123 34 1 6.0907 1.8005 1.3268 35 1 5.5792 3.8427 0.1617 36 1 4.0189 4.0356 1.0179 37 1 3.8545 0.9499 -4.0615 38 1 5.6675 -0.1150 -5.3384 39 1 8.0072 0.5553 -4.9774 40 1 8.5547 2.2966 -3.3343 41 1 9.2561 4.5520 0.0781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601297533.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:16 Heat of formation + Delta-G solvation = -129.068022 kcal Electronic energy + Delta-G solvation = -29392.307801 eV Core-core repulsion = 25364.428231 eV Total energy + Delta-G solvation = -4027.879570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.38740 -38.01491 -37.84158 -36.42268 -35.94427 -34.92130 -33.90790 -30.86540 -30.55589 -30.16479 -29.85246 -27.31984 -25.46910 -23.23289 -22.11012 -21.36692 -21.19401 -20.68487 -18.35444 -17.88110 -17.63754 -17.36621 -16.36083 -16.21920 -16.00943 -15.44012 -15.29051 -14.57948 -14.27763 -13.80917 -13.67736 -13.63898 -13.43911 -12.97475 -12.90711 -12.83401 -12.49335 -12.32186 -12.01511 -11.89948 -11.61542 -11.40404 -11.31125 -11.21545 -11.07248 -11.02606 -10.87336 -10.76928 -10.69014 -10.60201 -10.37150 -10.12779 -10.02267 -9.56605 -9.27472 -8.58378 -8.30458 -7.88662 -7.19680 -4.93000 1.28730 2.00968 2.44901 2.46014 2.82235 2.89833 2.98268 3.07989 3.70263 3.76242 4.19295 4.54826 4.68474 4.73147 4.92980 5.07981 5.17157 5.20122 5.28817 5.36711 5.46790 5.59990 5.70471 5.77217 5.83775 5.86495 6.02165 6.06935 6.11027 6.20137 6.36814 6.50849 6.55265 6.57654 6.68974 6.85604 6.91956 7.02357 7.20950 7.38271 7.50314 7.77813 8.00650 8.11871 8.26435 8.48158 9.75474 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013135 B = 0.006121 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.155462 B = 4573.408010 C = 5372.754388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.360 6.360 3 C 0.450 3.550 4 O -0.487 6.487 5 C 0.165 3.835 6 H 0.108 0.892 7 C -0.112 4.112 8 C -0.126 4.126 9 C 0.112 3.888 10 N -0.984 5.984 11 S 2.717 3.283 12 O -0.956 6.956 13 O -0.982 6.982 14 C -0.771 4.771 15 C 0.016 3.984 16 C -0.254 4.254 17 C -0.044 4.044 18 C -0.236 4.236 19 C 0.169 3.831 20 C -0.467 4.467 21 H 0.133 0.867 22 C 0.092 3.908 23 N -0.781 5.781 24 Si 0.903 3.097 25 H -0.265 1.265 26 H -0.285 1.285 27 H -0.242 1.242 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.061 0.939 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 -9.140 5.985 11.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.290 3.710 4 O -0.371 6.371 5 C 0.055 3.945 6 H 0.125 0.875 7 C -0.151 4.151 8 C -0.165 4.165 9 C -0.012 4.012 10 N -0.819 5.819 11 S 2.816 3.184 12 O -0.946 6.946 13 O -0.973 6.973 14 C -0.865 4.865 15 C -0.004 4.004 16 C -0.274 4.274 17 C -0.063 4.063 18 C -0.255 4.255 19 C 0.164 3.836 20 C -0.494 4.494 21 H 0.151 0.849 22 C -0.131 4.131 23 N -0.402 5.402 24 Si 0.729 3.271 25 H -0.191 1.191 26 H -0.212 1.212 27 H -0.166 1.166 28 H 0.116 0.884 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.135 0.865 36 H 0.079 0.921 37 H 0.132 0.868 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.141 -8.052 5.813 11.183 hybrid contribution 1.028 -0.998 -0.361 1.478 sum -4.113 -9.051 5.451 11.338 Atomic orbital electron populations 1.23212 0.76831 1.03118 1.02639 1.86469 1.23095 1.33563 1.84510 1.24293 0.92358 0.81598 0.72793 1.90637 1.66741 1.36480 1.43274 1.20766 0.85955 0.89880 0.97897 0.87455 1.22577 0.99294 1.01599 0.91632 1.22745 0.97808 0.96372 0.99552 1.22298 0.98007 0.93329 0.87568 1.58623 1.70243 1.27188 1.25850 1.00796 0.73085 0.73707 0.70805 1.93505 1.86280 1.29645 1.85212 1.93469 1.44509 1.79334 1.80021 1.30062 1.13854 1.20232 1.22336 1.20419 0.98135 0.90682 0.91202 1.20538 0.92987 1.06762 1.07155 1.20878 0.95775 0.94341 0.95269 1.21375 0.98839 1.03383 1.01938 1.17107 0.89269 0.88088 0.89138 1.20378 1.05761 1.07615 1.15639 0.84933 1.26162 0.96433 0.97831 0.92631 1.69618 1.19124 1.29356 1.22130 0.86472 0.80305 0.82994 0.77362 1.19057 1.21160 1.16551 0.88433 0.92238 0.91710 0.90461 0.89032 0.89823 0.89998 0.86524 0.92113 0.86850 0.87973 0.88160 0.87148 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.58 101.05 1.07 1.49 16 2 O -0.36 -5.42 10.56 -39.25 -0.41 -5.84 16 3 C 0.45 7.90 5.85 36.01 0.21 8.11 16 4 O -0.49 -9.99 15.30 -24.40 -0.37 -10.37 16 5 C 0.16 2.68 3.62 -68.10 -0.25 2.43 16 6 H 0.11 1.59 8.14 -51.92 -0.42 1.17 16 7 C -0.11 -1.38 6.47 -24.89 -0.16 -1.55 16 8 C -0.13 -1.72 7.07 -24.70 -0.17 -1.89 16 9 C 0.11 2.00 6.72 -2.64 -0.02 1.99 16 10 N -0.98 -19.23 3.06 -105.76 -0.32 -19.55 16 11 S 2.72 62.48 5.21 -107.50 -0.56 61.92 16 12 O -0.96 -24.62 15.07 -57.17 -0.86 -25.48 16 13 O -0.98 -23.38 14.59 -64.25 -0.94 -24.31 16 14 C -0.77 -17.89 5.97 -38.87 -0.23 -18.12 16 15 C 0.02 0.33 9.53 -39.66 -0.38 -0.05 16 16 C -0.25 -5.09 10.05 -39.29 -0.39 -5.48 16 17 C -0.04 -0.89 10.02 -39.66 -0.40 -1.29 16 18 C -0.24 -5.32 7.20 -38.87 -0.28 -5.60 16 19 C 0.17 4.07 5.05 -106.82 -0.54 3.53 16 20 C -0.47 -11.49 6.77 -37.75 -0.26 -11.75 16 21 H 0.13 3.56 4.92 -52.49 -0.26 3.30 16 22 C 0.09 2.13 5.26 -17.34 -0.09 2.04 16 23 N -0.78 -18.12 13.92 55.55 0.77 -17.35 16 24 Si 0.90 18.21 24.55 -169.99 -4.17 14.04 16 25 H -0.26 -5.27 6.44 56.52 0.36 -4.91 16 26 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 27 H -0.24 -4.97 7.02 56.52 0.40 -4.57 16 28 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.89 7.85 -51.93 -0.41 0.48 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.12 2.39 5.04 -51.93 -0.26 2.12 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.11 2.25 7.32 -52.49 -0.38 1.87 16 38 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.10 1.71 8.06 -52.48 -0.42 1.28 16 40 H 0.11 2.42 4.70 -52.49 -0.25 2.17 16 41 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 LS Contribution 342.34 15.07 5.16 5.16 Total: -1.00 -31.10 342.34 -8.56 -39.66 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -4.96 Total: 8.25 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: -1.89 Total: -26.14 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.45 Total: -36.90 kcal Atomic # 8 Polarization: -63.41 SS G_CDS: -2.59 Total: -66.00 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -4.17 Total: 14.04 kcal Atomic # 16 Polarization: 62.48 SS G_CDS: -0.56 Total: 61.92 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.10 -8.56 -39.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601297533.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.403 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds