Wall clock time and date at job start Tue Mar 31 2020 22:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34228 * 117.00359 * 2 1 4 4 O 1.20823 * 120.00106 * 354.95897 * 3 2 1 5 5 C 1.50705 * 120.00231 * 174.95576 * 3 2 1 6 6 H 1.09008 * 109.87198 * 34.41206 * 5 3 2 7 7 C 1.54320 * 110.01048 * 273.31791 * 5 3 2 8 8 C 1.55164 * 102.93791 * 218.31570 * 7 5 3 9 9 C 1.54691 * 101.67932 * 35.33595 * 8 7 5 10 10 N 1.47021 * 109.88148 * 155.42515 * 5 3 2 11 11 S 1.65596 * 125.65246 * 298.47779 * 10 5 3 12 12 O 1.42095 * 106.40301 * 163.36994 * 11 10 5 13 13 O 1.42102 * 106.40167 * 30.44971 * 11 10 5 14 14 C 1.76197 * 107.21738 * 276.90870 * 11 10 5 15 15 C 1.37637 * 120.12839 * 112.87234 * 14 11 10 16 16 C 1.38617 * 120.25238 * 179.97438 * 15 14 11 17 17 C 1.38656 * 120.49511 * 0.02562 * 16 15 14 18 18 C 1.37598 * 120.25301 * 359.97438 * 17 16 15 19 19 C 1.40701 * 120.12828 * 293.12366 * 14 11 10 20 20 C 1.41392 * 120.24618 * 0.02681 * 19 14 11 21 21 H 1.08002 * 119.99683 * 326.13151 * 20 19 14 22 22 C 1.39938 * 120.00414 * 146.12347 * 20 19 14 23 23 N 1.30825 * 120.00223 * 167.30803 * 22 20 19 24 24 Si 1.86809 * 119.99743 * 347.31297 * 22 20 19 25 25 H 1.48497 * 109.47042 * 87.62891 * 24 22 20 26 26 H 1.48506 * 109.46959 * 207.62493 * 24 22 20 27 27 H 1.48502 * 109.47118 * 327.62515 * 24 22 20 28 28 H 1.09000 * 109.47475 * 184.81392 * 1 2 3 29 29 H 1.09004 * 109.46920 * 304.81429 * 1 2 3 30 30 H 1.09000 * 109.47348 * 64.81192 * 1 2 3 31 31 H 1.08999 * 110.71798 * 336.67663 * 7 5 3 32 32 H 1.08995 * 110.72179 * 99.95608 * 7 5 3 33 33 H 1.09002 * 110.99960 * 153.57536 * 8 7 5 34 34 H 1.08993 * 111.00371 * 277.38586 * 8 7 5 35 35 H 1.08998 * 110.39300 * 204.36851 * 9 8 7 36 36 H 1.08992 * 110.23518 * 82.10954 * 9 8 7 37 37 H 1.07999 * 119.87707 * 0.02562 * 15 14 11 38 38 H 1.07990 * 119.75456 * 180.02562 * 16 15 14 39 39 H 1.08003 * 119.87486 * 180.02562 * 17 16 15 40 40 H 1.07997 * 120.12554 * 179.97438 * 18 17 16 41 41 H 0.97004 * 119.99563 * 185.01177 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4070 2.2075 -0.0919 5 6 3.5619 1.2771 0.1148 6 1 4.0190 0.4300 -0.3970 7 6 3.9785 1.2796 1.6007 8 6 5.1613 2.2835 1.6281 9 6 4.7140 3.3233 0.5737 10 7 4.0411 2.5356 -0.4752 11 16 3.8612 2.9899 -2.0574 12 8 4.1036 4.3893 -2.1031 13 8 2.6529 2.3952 -2.5108 14 6 5.1629 2.2296 -2.9696 15 6 4.8781 1.2511 -3.8948 16 6 5.9001 0.6516 -4.6142 17 6 7.2188 1.0288 -4.4110 18 6 7.5269 2.0047 -3.4912 19 6 6.4979 2.6165 -2.7513 20 6 6.8030 3.6164 -1.7993 21 1 6.1187 4.4365 -1.6393 22 6 7.9915 3.5433 -1.0641 23 7 8.3973 4.5768 -0.3723 24 14 8.9986 1.9700 -1.0709 25 1 9.9416 1.9908 -2.2178 26 1 9.7641 1.8668 0.1975 27 1 8.0908 0.8016 -1.1975 28 1 -0.3634 -1.0240 0.0862 29 1 -0.3633 0.5867 0.8438 30 1 -0.3634 0.4374 -0.9299 31 1 3.1604 1.6301 2.2299 32 1 4.3073 0.2877 1.9106 33 1 5.2624 2.7411 2.6123 34 1 6.0907 1.8005 1.3268 35 1 5.5792 3.8427 0.1617 36 1 4.0189 4.0356 1.0179 37 1 3.8545 0.9499 -4.0615 38 1 5.6675 -0.1150 -5.3384 39 1 8.0072 0.5553 -4.9774 40 1 8.5547 2.2966 -3.3343 41 1 9.2561 4.5520 0.0781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601297533.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:15 Heat of formation + Delta-G solvation = -149.849812 kcal Electronic energy + Delta-G solvation = -29393.208967 eV Core-core repulsion = 25364.428231 eV Total energy + Delta-G solvation = -4028.780736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.69598 -39.64771 -39.16747 -38.24192 -37.31323 -36.80106 -35.62939 -32.52786 -31.89487 -31.84326 -31.11949 -28.36151 -27.19776 -24.53507 -23.77121 -22.96486 -22.54685 -21.97350 -19.93399 -19.57290 -19.11926 -18.87557 -18.03681 -17.50268 -17.34727 -17.00002 -16.86751 -16.08668 -15.88330 -15.46716 -15.34039 -14.92380 -14.72488 -14.55861 -14.32368 -14.11893 -13.97875 -13.73389 -13.55543 -13.18860 -13.12260 -13.04997 -12.96762 -12.77271 -12.72240 -12.63690 -12.44063 -12.21226 -11.91631 -11.86014 -11.78356 -11.66204 -11.42526 -11.27029 -10.96222 -10.09802 -9.94808 -9.59944 -8.90850 -6.72191 -0.42344 0.30292 0.75851 1.12176 1.28929 1.39825 1.49888 1.62067 2.09145 2.16866 2.50982 2.92336 3.24631 3.32865 3.51756 3.73332 3.92416 4.05221 4.17855 4.28019 4.30748 4.31407 4.36326 4.56831 4.58115 4.68423 4.69674 4.77234 4.82147 4.89352 4.93322 5.03283 5.21359 5.23482 5.31357 5.33828 5.34960 5.45150 5.56837 5.70604 5.81405 6.08518 6.30093 6.53247 6.68997 6.70794 8.10141 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013135 B = 0.006121 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.155462 B = 4573.408010 C = 5372.754388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.450 3.550 4 O -0.527 6.527 5 C 0.150 3.850 6 H 0.123 0.877 7 C -0.098 4.098 8 C -0.116 4.116 9 C 0.103 3.897 10 N -0.987 5.987 11 S 2.722 3.278 12 O -0.999 6.999 13 O -0.999 6.999 14 C -0.784 4.784 15 C 0.000 4.000 16 C -0.243 4.243 17 C -0.039 4.039 18 C -0.256 4.256 19 C 0.153 3.847 20 C -0.489 4.489 21 H 0.096 0.904 22 C 0.068 3.932 23 N -0.812 5.812 24 Si 0.949 3.051 25 H -0.258 1.258 26 H -0.267 1.267 27 H -0.245 1.245 28 H 0.140 0.860 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.132 0.868 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.125 0.875 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.115 0.885 41 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.430 -12.791 6.453 14.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.291 3.709 4 O -0.415 6.415 5 C 0.041 3.959 6 H 0.141 0.859 7 C -0.137 4.137 8 C -0.155 4.155 9 C -0.021 4.021 10 N -0.825 5.825 11 S 2.822 3.178 12 O -0.990 6.990 13 O -0.990 6.990 14 C -0.879 4.879 15 C -0.020 4.020 16 C -0.263 4.263 17 C -0.057 4.057 18 C -0.276 4.276 19 C 0.148 3.852 20 C -0.516 4.516 21 H 0.114 0.886 22 C -0.152 4.152 23 N -0.435 5.435 24 Si 0.772 3.228 25 H -0.183 1.183 26 H -0.192 1.192 27 H -0.169 1.169 28 H 0.158 0.842 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.150 0.850 33 H 0.130 0.870 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.142 0.858 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.132 0.868 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.266 -11.711 6.280 13.956 hybrid contribution 0.622 0.094 -0.591 0.863 sum -3.644 -11.617 5.689 13.438 Atomic orbital electron populations 1.23567 0.74951 1.05904 1.02180 1.86457 1.24915 1.32029 1.83795 1.24568 0.92888 0.81688 0.71723 1.90624 1.67658 1.37865 1.45355 1.21256 0.85391 0.88616 1.00595 0.85944 1.22672 0.98822 1.03362 0.88807 1.22743 0.98135 0.95395 0.99229 1.22385 0.96826 0.94677 0.88240 1.58296 1.70547 1.28770 1.24844 1.00278 0.72923 0.72875 0.71707 1.93447 1.86770 1.32486 1.86266 1.93430 1.45347 1.79287 1.80932 1.30113 1.13476 1.20923 1.23375 1.20715 0.99451 0.90618 0.91220 1.21023 0.92417 1.06389 1.06424 1.21346 0.97103 0.93078 0.94161 1.21532 0.98642 1.04548 1.02857 1.17279 0.90115 0.88393 0.89385 1.20189 1.06366 1.07601 1.17459 0.88632 1.26688 0.96660 1.00084 0.91754 1.69634 1.20052 1.30869 1.22937 0.85763 0.79145 0.79571 0.78343 1.18343 1.19236 1.16855 0.84175 0.91551 0.93264 0.89358 0.85011 0.86967 0.90133 0.89629 0.92326 0.85759 0.84140 0.84054 0.86786 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.58 113.37 1.20 1.79 16 2 O -0.36 -10.12 10.56 -51.40 -0.54 -10.66 16 3 C 0.45 15.53 5.85 71.24 0.42 15.94 16 4 O -0.53 -22.03 15.30 27.38 0.42 -21.62 16 5 C 0.15 4.73 3.62 44.60 0.16 4.89 16 6 H 0.12 3.44 8.14 -2.38 -0.02 3.42 16 7 C -0.10 -2.15 6.47 31.78 0.21 -1.94 16 8 C -0.12 -2.99 7.07 31.91 0.23 -2.77 16 9 C 0.10 3.81 6.72 86.78 0.58 4.39 16 10 N -0.99 -39.55 3.06 -488.51 -1.49 -41.04 16 11 S 2.72 130.73 5.21 -56.49 -0.29 130.43 16 12 O -1.00 -55.38 15.07 -128.00 -1.93 -57.31 16 13 O -1.00 -49.12 14.59 -121.24 -1.77 -50.88 16 14 C -0.78 -36.85 5.97 22.73 0.14 -36.72 16 15 C 0.00 -0.01 9.53 22.22 0.21 0.20 16 16 C -0.24 -8.87 10.05 22.46 0.23 -8.64 16 17 C -0.04 -1.43 10.02 22.22 0.22 -1.21 16 18 C -0.26 -11.19 7.20 22.73 0.16 -11.02 16 19 C 0.15 7.45 5.05 -21.29 -0.11 7.34 16 20 C -0.49 -25.08 6.77 23.46 0.16 -24.92 16 21 H 0.10 5.55 4.92 -2.91 -0.01 5.54 16 22 C 0.07 3.20 5.26 85.25 0.45 3.65 16 23 N -0.81 -38.74 13.92 21.82 0.30 -38.44 16 24 Si 0.95 36.35 24.55 68.60 1.68 38.03 16 25 H -0.26 -9.53 6.44 99.48 0.64 -8.89 16 26 H -0.27 -9.31 7.11 99.48 0.71 -8.60 16 27 H -0.25 -9.43 7.02 99.48 0.70 -8.73 16 28 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 1.36 8.10 -2.39 -0.02 1.34 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.77 7.85 -2.39 -0.02 1.76 16 32 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.09 3.76 5.04 -2.39 -0.01 3.74 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.12 4.81 7.32 -2.91 -0.02 4.79 16 38 H 0.14 4.05 8.06 -2.92 -0.02 4.03 16 39 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 40 H 0.11 4.81 4.70 -2.91 -0.01 4.80 16 41 H 0.30 12.75 8.30 -92.71 -0.77 11.98 16 Total: -1.00 -71.61 342.34 1.62 -69.99 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.99 Total: 30.51 kcal Atomic # 6 Polarization: -53.27 SS G_CDS: 4.25 Total: -49.02 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -1.19 Total: -79.48 kcal Atomic # 8 Polarization: -136.65 SS G_CDS: -3.82 Total: -140.47 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 1.68 Total: 38.03 kcal Atomic # 16 Polarization: 130.73 SS G_CDS: -0.29 Total: 130.43 kcal Total: -71.61 1.62 -69.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601297533.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.860 kcal (2) G-P(sol) polarization free energy of solvation -71.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds