Wall clock time and date at job start Tue Mar 31 2020 22:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 117.00228 * 2 1 4 4 O 1.20825 * 119.99725 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99995 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47297 * 59.99475 * 5 3 2 7 7 N 1.46496 * 109.46985 * 179.97438 * 5 3 2 8 8 S 1.65600 * 120.00145 * 216.69256 * 7 5 3 9 9 O 1.42099 * 106.40244 * 177.07993 * 8 7 5 10 10 O 1.42106 * 106.40253 * 310.00152 * 8 7 5 11 11 C 1.76198 * 107.21624 * 63.53882 * 8 7 5 12 12 C 1.37641 * 120.12780 * 243.96254 * 11 8 7 13 13 C 1.38616 * 120.24813 * 179.97438 * 12 11 8 14 14 C 1.38660 * 120.49769 * 0.02562 * 13 12 11 15 15 C 1.37596 * 120.25176 * 0.02562 * 14 13 12 16 16 C 1.40695 * 120.12718 * 63.68613 * 11 8 7 17 17 C 1.41399 * 120.24649 * 0.02562 * 16 11 8 18 18 H 1.08001 * 119.99108 * 329.56215 * 17 16 11 19 19 C 1.39942 * 120.00558 * 149.56237 * 17 16 11 20 20 N 1.30819 * 120.00057 * 346.59846 * 19 17 16 21 21 Si 1.86798 * 119.99931 * 166.59118 * 19 17 16 22 22 H 1.48500 * 109.47182 * 5.01086 * 21 19 17 23 23 H 1.48501 * 109.46921 * 125.01014 * 21 19 17 24 24 H 1.48499 * 109.47237 * 245.00740 * 21 19 17 25 25 C 1.53007 * 109.46886 * 299.99716 * 5 3 2 26 26 C 1.52998 * 117.49806 * 133.72515 * 25 5 3 27 27 C 1.53002 * 117.49479 * 65.06518 * 25 5 3 28 28 H 1.08991 * 109.47133 * 300.00252 * 1 2 3 29 29 H 1.09003 * 109.47087 * 59.99771 * 1 2 3 30 30 H 1.08994 * 109.47147 * 179.97438 * 1 2 3 31 31 H 0.97003 * 120.00337 * 36.69703 * 7 5 3 32 32 H 1.07993 * 119.87925 * 0.02562 * 12 11 8 33 33 H 1.07996 * 119.75083 * 180.02562 * 13 12 11 34 34 H 1.08005 * 119.87517 * 180.02562 * 14 13 12 35 35 H 1.08001 * 120.12461 * 179.97438 * 15 14 13 36 36 H 0.97003 * 120.00183 * 179.97438 * 20 19 17 37 37 H 1.08996 * 115.55393 * 279.39595 * 25 5 3 38 38 H 1.09002 * 117.49786 * 359.97438 * 26 25 5 39 39 H 1.08997 * 117.50432 * 145.02149 * 26 25 5 40 40 H 1.09001 * 117.49785 * 214.97494 * 27 25 5 41 41 H 1.08998 * 117.50356 * 359.97438 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9558 0.7808 -0.8907 7 7 3.9818 2.6796 -0.0011 8 16 5.3190 3.1474 -0.8586 9 8 5.4142 4.5579 -0.7156 10 8 6.3634 2.2566 -0.4909 11 6 4.9804 2.8416 -2.5605 12 6 5.7267 1.9194 -3.2585 13 6 5.4622 1.6765 -4.5973 14 6 4.4453 2.3580 -5.2487 15 6 3.6872 3.2850 -4.5709 16 6 3.9424 3.5348 -3.2097 17 6 3.1656 4.4805 -2.5014 18 1 2.9948 4.3543 -1.4425 19 6 2.6182 5.5798 -3.1724 20 7 3.0290 5.8816 -4.3772 21 14 1.3007 6.6159 -2.3479 22 1 1.1001 6.1443 -0.9542 23 1 1.7272 8.0383 -2.3326 24 1 0.0274 6.4891 -3.1015 25 6 4.1139 0.5810 1.2484 26 6 5.2858 -0.3851 1.0635 27 6 3.8884 -0.9271 1.3748 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.4736 3.3359 0.5009 32 1 6.5208 1.3826 -2.7611 33 1 6.0525 0.9510 -5.1372 34 1 4.2476 2.1605 -6.2919 35 1 2.8960 3.8149 -5.0804 36 1 2.6493 6.6434 -4.8425 37 1 4.0886 1.1721 2.1638 38 1 5.6665 -0.5267 0.0519 39 1 6.0313 -0.4298 1.8573 40 1 3.7153 -1.3281 2.3735 41 1 3.3498 -1.4248 0.5685 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601361525.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:29 Heat of formation + Delta-G solvation = -132.370563 kcal Electronic energy + Delta-G solvation = -28830.054591 eV Core-core repulsion = 24802.031813 eV Total energy + Delta-G solvation = -4028.022779 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.66922 -39.40652 -38.71851 -37.95792 -37.57525 -36.67801 -35.71281 -35.06393 -32.04730 -31.40666 -29.71502 -27.55512 -27.30012 -23.49544 -23.25581 -22.98173 -22.85599 -21.51702 -20.57585 -19.55378 -19.04582 -18.42562 -18.08245 -17.60611 -17.34290 -17.10116 -16.92231 -16.17440 -16.04772 -15.37340 -15.25980 -15.07851 -14.91555 -14.50465 -14.32962 -13.93316 -13.75470 -13.34085 -13.13793 -13.00791 -12.99037 -12.93424 -12.87466 -12.83720 -12.78030 -12.51444 -12.26740 -12.16756 -11.96285 -11.76566 -11.66204 -11.40187 -11.22083 -11.16320 -10.87100 -10.46518 -9.86727 -9.44699 -8.85251 -6.63515 -0.27191 0.49591 0.93889 1.10136 1.30162 1.42988 1.45950 1.58255 2.12497 2.20667 2.58869 2.94410 3.02711 3.43060 3.54848 3.76068 3.78070 3.87390 4.03714 4.28711 4.32705 4.35360 4.36550 4.38502 4.49012 4.68899 4.72895 4.78478 4.97225 4.97583 5.11095 5.12635 5.26712 5.28592 5.32752 5.41750 5.50410 5.68351 5.78388 5.96056 5.98256 6.06529 6.45500 6.65474 6.68772 6.80188 8.12761 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010192 B = 0.006073 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.546973 B = 4609.518501 C = 5514.649600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.347 6.347 3 C 0.464 3.536 4 O -0.520 6.520 5 C 0.201 3.799 6 H 0.120 0.880 7 N -1.098 6.098 8 S 2.721 3.279 9 O -0.997 6.997 10 O -0.981 6.981 11 C -0.797 4.797 12 C -0.013 4.013 13 C -0.246 4.246 14 C -0.073 4.073 15 C -0.187 4.187 16 C 0.163 3.837 17 C -0.477 4.477 18 H 0.089 0.911 19 C 0.043 3.957 20 N -0.805 5.805 21 Si 0.967 3.033 22 H -0.258 1.258 23 H -0.262 1.262 24 H -0.254 1.254 25 C -0.192 4.192 26 C -0.162 4.162 27 C -0.144 4.144 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.139 0.861 31 H 0.422 0.578 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.295 0.705 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.183 -12.867 7.922 15.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.262 6.262 3 C 0.306 3.694 4 O -0.408 6.408 5 C 0.092 3.908 6 H 0.138 0.862 7 N -0.855 5.855 8 S 2.817 3.183 9 O -0.987 6.987 10 O -0.972 6.972 11 C -0.891 4.891 12 C -0.032 4.032 13 C -0.266 4.266 14 C -0.091 4.091 15 C -0.207 4.207 16 C 0.158 3.842 17 C -0.505 4.505 18 H 0.107 0.893 19 C -0.176 4.176 20 N -0.429 5.429 21 Si 0.787 3.213 22 H -0.181 1.181 23 H -0.186 1.186 24 H -0.178 1.178 25 C -0.212 4.212 26 C -0.199 4.199 27 C -0.181 4.181 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.157 0.843 31 H 0.258 0.742 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.141 0.859 35 H 0.124 0.876 36 H 0.106 0.894 37 H 0.138 0.862 38 H 0.112 0.888 39 H 0.127 0.873 40 H 0.137 0.863 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.577 -12.169 8.018 15.005 hybrid contribution -1.369 1.276 -0.581 1.959 sum -4.946 -10.893 7.438 14.087 Atomic orbital electron populations 1.23581 0.74875 1.05905 1.02266 1.86487 1.24741 1.31411 1.83566 1.23846 0.91907 0.81915 0.71776 1.90688 1.67085 1.37428 1.45628 1.19777 0.87329 0.82449 1.01246 0.86226 1.55460 1.49289 1.14543 1.66249 1.00506 0.72100 0.72117 0.73558 1.93502 1.85980 1.32075 1.87173 1.93463 1.53611 1.66745 1.83331 1.30206 1.13878 1.20780 1.24255 1.20647 0.95057 0.92655 0.94885 1.20940 1.03700 1.06760 0.95208 1.21266 0.94555 0.94339 0.98979 1.21463 1.02723 1.00641 0.95847 1.17302 0.86814 0.87343 0.92713 1.20149 1.27233 1.05690 0.97440 0.89292 1.26672 0.97373 0.98477 0.95034 1.69815 1.35377 1.24786 1.12951 0.85369 0.77915 0.77984 0.80059 1.18149 1.18626 1.17779 1.22555 1.07031 0.94209 0.97432 1.23120 0.91800 1.01020 1.03915 1.23165 0.98294 0.91866 1.04801 0.91699 0.92983 0.84263 0.74244 0.85002 0.84958 0.85851 0.87571 0.89380 0.86182 0.88773 0.87308 0.86308 0.87311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.71 16 2 O -0.35 -8.66 8.92 -51.41 -0.46 -9.12 16 3 C 0.46 14.75 7.32 71.24 0.52 15.28 16 4 O -0.52 -19.93 15.77 21.97 0.35 -19.58 16 5 C 0.20 6.29 2.89 44.25 0.13 6.41 16 6 H 0.12 3.72 7.57 -2.39 -0.02 3.70 16 7 N -1.10 -40.54 4.25 -172.53 -0.73 -41.27 16 8 S 2.72 118.89 4.86 -56.49 -0.27 118.61 16 9 O -1.00 -51.36 16.72 -128.00 -2.14 -53.50 16 10 O -0.98 -40.97 16.76 -128.00 -2.15 -43.12 16 11 C -0.80 -38.00 5.71 22.73 0.13 -37.87 16 12 C -0.01 -0.55 9.53 22.22 0.21 -0.34 16 13 C -0.25 -9.97 10.05 22.46 0.23 -9.74 16 14 C -0.07 -3.15 10.02 22.22 0.22 -2.93 16 15 C -0.19 -9.45 8.65 22.73 0.20 -9.25 16 16 C 0.16 8.57 5.52 -21.29 -0.12 8.45 16 17 C -0.48 -25.56 7.61 23.46 0.18 -25.38 16 18 H 0.09 4.63 5.80 -2.91 -0.02 4.62 16 19 C 0.04 2.18 5.19 85.26 0.44 2.63 16 20 N -0.81 -41.77 11.09 21.82 0.24 -41.53 16 21 Si 0.97 39.81 29.58 68.60 2.03 41.84 16 22 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 23 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 24 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 25 C -0.19 -4.74 5.38 -10.79 -0.06 -4.80 16 26 C -0.16 -3.60 10.18 30.62 0.31 -3.29 16 27 C -0.14 -2.63 9.47 30.62 0.29 -2.34 16 28 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 29 H 0.05 1.13 8.13 -2.39 -0.02 1.11 16 30 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.42 15.25 8.02 -96.74 -0.78 14.48 16 32 H 0.13 4.96 7.33 -2.91 -0.02 4.94 16 33 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 34 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 35 H 0.11 5.55 6.43 -2.91 -0.02 5.53 16 36 H 0.30 13.68 8.30 -92.71 -0.77 12.91 16 37 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.09 2.28 8.08 -2.39 -0.02 2.26 16 39 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.11 1.93 7.28 -2.39 -0.02 1.91 16 Total: -1.00 -69.34 361.10 1.05 -68.29 By element: Atomic # 1 Polarization: 40.51 SS G_CDS: 0.30 Total: 40.82 kcal Atomic # 6 Polarization: -65.33 SS G_CDS: 3.88 Total: -61.45 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -0.49 Total: -82.80 kcal Atomic # 8 Polarization: -120.92 SS G_CDS: -4.40 Total: -125.31 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Atomic # 16 Polarization: 118.89 SS G_CDS: -0.27 Total: 118.61 kcal Total: -69.34 1.05 -68.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601361525.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.078 kcal (2) G-P(sol) polarization free energy of solvation -69.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds