Wall clock time and date at job start Tue Mar 31 2020 22:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.78136 * 2 1 4 4 C 1.55149 * 110.72376 * 123.24544 * 2 1 3 5 5 C 1.54906 * 101.58709 * 153.86272 * 4 2 1 6 6 N 1.47424 * 104.82983 * 322.99246 * 5 4 2 7 7 S 1.65602 * 125.64933 * 204.15997 * 6 5 4 8 8 O 1.42100 * 106.39888 * 23.50078 * 7 6 5 9 9 O 1.42100 * 106.40293 * 156.41904 * 7 6 5 10 10 C 1.76195 * 107.22023 * 269.96147 * 7 6 5 11 11 C 1.38657 * 119.87294 * 269.72863 * 10 7 6 12 12 C 1.38622 * 120.50173 * 179.72275 * 11 10 7 13 13 C 1.37640 * 120.24544 * 0.54753 * 12 11 10 14 14 C 1.40705 * 119.74561 * 359.72649 * 13 12 11 15 15 C 1.41396 * 120.24469 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99545 * 155.20177 * 15 14 13 17 17 C 1.39937 * 119.99884 * 335.21026 * 15 14 13 18 18 N 1.30825 * 120.00240 * 342.29021 * 17 15 14 19 19 Si 1.86805 * 119.99965 * 162.29473 * 17 15 14 20 20 H 1.48496 * 109.46992 * 89.99304 * 19 17 15 21 21 H 1.48498 * 109.47226 * 209.99766 * 19 17 15 22 22 H 1.48504 * 109.46826 * 329.99570 * 19 17 15 23 23 C 1.37596 * 119.87978 * 89.99460 * 10 7 6 24 24 C 1.47024 * 108.70413 * 24.12883 * 6 5 4 25 25 H 1.09002 * 110.00670 * 239.45491 * 24 6 5 26 26 C 1.50694 * 109.88732 * 118.35853 * 24 6 5 27 27 O 1.20837 * 119.99651 * 342.19043 * 26 24 6 28 28 O 1.34221 * 120.00447 * 162.19103 * 26 24 6 29 29 H 1.08996 * 109.47270 * 183.23703 * 1 2 3 30 30 H 1.09002 * 109.46874 * 303.23785 * 1 2 3 31 31 H 1.08997 * 109.47001 * 63.22696 * 1 2 3 32 32 H 1.09003 * 111.00453 * 271.93907 * 4 2 1 33 33 H 1.09004 * 111.00241 * 35.78885 * 4 2 1 34 34 H 1.09002 * 110.37174 * 204.15506 * 5 4 2 35 35 H 1.09000 * 110.36777 * 81.82505 * 5 4 2 36 36 H 1.07996 * 119.75396 * 359.97438 * 11 10 7 37 37 H 1.07998 * 119.87731 * 180.25216 * 12 11 10 38 38 H 1.07995 * 120.13070 * 179.70799 * 13 12 11 39 39 H 0.97006 * 119.99839 * 180.02562 * 18 17 15 40 40 H 1.08002 * 120.12643 * 0.02986 * 23 10 7 41 41 H 0.96703 * 117.00502 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0790 -0.7955 1.2136 5 6 3.4633 -1.2499 0.6873 6 7 3.2444 -1.5507 -0.7392 7 16 4.1622 -2.5752 -1.6614 8 8 4.7854 -3.4782 -0.7584 9 8 3.3343 -2.9981 -2.7361 10 6 5.4552 -1.6158 -2.3772 11 6 5.2660 -1.0134 -3.6116 12 6 6.2723 -0.2510 -4.1842 13 6 7.4764 -0.0934 -3.5364 14 6 7.6817 -0.7047 -2.2858 15 6 8.9144 -0.5493 -1.6108 16 1 8.9583 -0.6512 -0.5366 17 6 10.0773 -0.2632 -2.3348 18 7 10.1137 -0.4765 -3.6250 19 14 11.5777 0.4231 -1.4588 20 1 12.4374 -0.6968 -0.9985 21 1 12.3454 1.2847 -2.3933 22 1 11.1429 1.2269 -0.2883 23 6 6.6508 -1.4716 -1.7116 24 6 2.0760 -0.7910 -1.2074 25 1 1.3119 -1.4737 -1.5794 26 6 2.4880 0.1614 -2.3002 27 8 3.6528 0.4493 -2.4431 28 8 1.5612 0.6898 -3.1146 29 1 -0.3633 -1.0260 0.0580 30 1 -0.3633 0.5633 0.8596 31 1 -0.3633 0.4629 -0.9175 32 1 2.1850 -0.1520 2.0870 33 1 1.4452 -1.6537 1.4372 34 1 3.7960 -2.1428 1.2166 35 1 4.1932 -0.4480 0.7982 36 1 4.3260 -1.1356 -4.1292 37 1 6.1125 0.2170 -5.1443 38 1 8.2608 0.4971 -3.9863 39 1 10.9200 -0.2786 -4.1267 40 1 6.7978 -1.9457 -0.7524 41 1 1.8736 1.2953 -3.8009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619471439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:54 Heat of formation + Delta-G solvation = -161.509026 kcal Electronic energy + Delta-G solvation = -28621.314700 eV Core-core repulsion = 24592.028383 eV Total energy + Delta-G solvation = -4029.286317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.61007 -39.44977 -39.25947 -38.41989 -37.07939 -36.99176 -35.64505 -33.60524 -31.90811 -31.58248 -31.09180 -27.78781 -27.34404 -24.21589 -23.70985 -22.82802 -22.74133 -21.44800 -20.27843 -19.59342 -19.20384 -18.75671 -17.86890 -17.61163 -17.17686 -16.80720 -16.58788 -16.35677 -15.99086 -15.27135 -15.11516 -14.96736 -14.60581 -14.47979 -14.30456 -13.91627 -13.72127 -13.64698 -13.36813 -13.34459 -13.13709 -13.09511 -12.99951 -12.88967 -12.62323 -12.54077 -12.43697 -12.34563 -12.15784 -11.73290 -11.71424 -11.57838 -11.42514 -11.37555 -11.11311 -10.23341 -9.78726 -9.48355 -8.71365 -6.42705 -0.70743 0.44159 0.84578 1.20208 1.35324 1.45509 1.51668 1.74390 2.17135 2.21346 2.54515 2.69760 3.04813 3.35813 3.54719 3.69129 3.90899 4.14577 4.25973 4.30375 4.35780 4.43530 4.50197 4.58875 4.78381 4.80093 4.84511 4.89232 4.97535 5.06164 5.12431 5.16297 5.19539 5.28021 5.38790 5.44305 5.50394 5.57510 5.65233 5.88548 5.93919 6.11109 6.52996 6.81436 6.86724 7.00180 8.27433 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016438 B = 0.003957 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.994864 B = 7075.157114 C = 7282.313320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 H 0.088 0.912 4 C -0.108 4.108 5 C 0.098 3.902 6 N -0.991 5.991 7 S 2.720 3.280 8 O -0.982 6.982 9 O -0.983 6.983 10 C -0.631 4.631 11 C -0.098 4.098 12 C -0.127 4.127 13 C -0.134 4.134 14 C 0.062 3.938 15 C -0.502 4.502 16 H 0.079 0.921 17 C 0.035 3.965 18 N -0.830 5.830 19 Si 0.986 3.014 20 H -0.262 1.262 21 H -0.264 1.264 22 H -0.257 1.257 23 C -0.145 4.145 24 C 0.155 3.845 25 H 0.130 0.870 26 C 0.439 3.561 27 O -0.509 6.509 28 O -0.505 6.505 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.290 0.710 40 H 0.107 0.893 41 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.125 4.635 7.625 20.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 H 0.106 0.894 4 C -0.147 4.147 5 C -0.026 4.026 6 N -0.830 5.830 7 S 2.817 3.183 8 O -0.973 6.973 9 O -0.974 6.974 10 C -0.720 4.720 11 C -0.119 4.119 12 C -0.146 4.146 13 C -0.154 4.154 14 C 0.059 3.941 15 C -0.532 4.532 16 H 0.097 0.903 17 C -0.179 4.179 18 N -0.456 5.456 19 Si 0.806 3.194 20 H -0.186 1.186 21 H -0.188 1.188 22 H -0.181 1.181 23 C -0.166 4.166 24 C 0.047 3.953 25 H 0.147 0.853 26 C 0.278 3.722 27 O -0.396 6.396 28 O -0.318 6.318 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.135 0.865 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.101 0.899 40 H 0.125 0.875 41 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -17.882 3.474 7.515 19.706 hybrid contribution 1.948 1.219 -0.998 2.506 sum -15.934 4.694 6.517 17.844 Atomic orbital electron populations 1.21811 0.90513 1.03726 1.03678 1.22246 0.98486 0.98692 0.90459 0.89360 1.22948 0.93045 1.01264 0.97430 1.22476 1.00547 1.01970 0.77598 1.58438 1.41442 1.61291 1.21779 1.00701 0.72611 0.72870 0.72134 1.93494 1.77256 1.61256 1.65275 1.93478 1.67951 1.80605 1.55359 1.30058 1.14455 1.20148 1.07379 1.19989 0.98045 0.99814 0.94073 1.20990 0.93985 1.00065 0.99586 1.21564 0.96213 1.00509 0.97069 1.17981 0.93209 0.89985 0.92921 1.19809 0.92644 1.45248 0.95452 0.90300 1.26790 1.03369 0.92354 0.95430 1.69841 1.30856 1.35343 1.09531 0.85159 0.76189 0.79053 0.79044 1.18632 1.18817 1.18112 1.20739 0.94166 1.01338 1.00404 1.21360 0.87823 0.92543 0.93538 0.85281 1.24449 0.84049 0.81086 0.82573 1.91030 1.20381 1.58201 1.69995 1.84420 1.41931 1.60438 1.44991 0.90958 0.89635 0.91676 0.86535 0.87995 0.89002 0.91675 0.87316 0.86375 0.87110 0.89884 0.87510 0.71390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.14 71.98 0.66 -0.68 16 2 C -0.08 -1.20 3.06 -9.61 -0.03 -1.23 16 3 H 0.09 1.41 7.84 -2.39 -0.02 1.39 16 4 C -0.11 -1.46 6.53 31.98 0.21 -1.25 16 5 C 0.10 2.31 7.10 86.85 0.62 2.93 16 6 N -0.99 -29.88 3.05 -488.13 -1.49 -31.37 16 7 S 2.72 110.10 5.54 -56.49 -0.31 109.79 16 8 O -0.98 -43.43 16.59 -128.00 -2.12 -45.55 16 9 O -0.98 -41.46 16.84 -128.00 -2.16 -43.61 16 10 C -0.63 -30.36 4.93 22.22 0.11 -30.25 16 11 C -0.10 -4.67 6.62 22.46 0.15 -4.52 16 12 C -0.13 -6.26 10.02 22.22 0.22 -6.03 16 13 C -0.13 -7.33 8.70 22.73 0.20 -7.13 16 14 C 0.06 3.53 5.57 -21.29 -0.12 3.41 16 15 C -0.50 -28.00 9.05 23.46 0.21 -27.78 16 16 H 0.08 4.22 7.91 -2.91 -0.02 4.20 16 17 C 0.04 1.81 5.14 85.25 0.44 2.24 16 18 N -0.83 -44.21 10.97 21.82 0.24 -43.97 16 19 Si 0.99 38.75 29.59 68.60 2.03 40.78 16 20 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 21 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 22 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 23 C -0.15 -7.71 9.26 22.73 0.21 -7.50 16 24 C 0.16 3.71 2.95 44.59 0.13 3.84 16 25 H 0.13 2.69 7.82 -2.39 -0.02 2.67 16 26 C 0.44 12.22 7.24 71.23 0.52 12.74 16 27 O -0.51 -18.72 12.41 21.93 0.27 -18.45 16 28 O -0.50 -10.31 13.42 -51.33 -0.69 -11.00 16 29 H 0.07 0.60 8.10 -2.39 -0.02 0.58 16 30 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.10 1.04 8.02 -2.38 -0.02 1.02 16 34 H 0.09 2.14 7.78 -2.39 -0.02 2.12 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.11 4.74 7.34 -2.91 -0.02 4.72 16 37 H 0.12 5.05 8.06 -2.91 -0.02 5.02 16 38 H 0.11 6.20 6.18 -2.91 -0.02 6.18 16 39 H 0.29 13.89 8.30 -92.70 -0.77 13.12 16 40 H 0.11 5.48 7.60 -2.91 -0.02 5.45 16 41 H 0.42 5.82 9.10 -74.06 -0.67 5.15 16 Total: -1.00 -76.37 351.66 -0.31 -76.68 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: 0.40 Total: 27.93 kcal Atomic # 6 Polarization: -64.74 SS G_CDS: 3.52 Total: -61.22 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -1.25 Total: -75.35 kcal Atomic # 8 Polarization: -113.93 SS G_CDS: -4.70 Total: -118.62 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Atomic # 16 Polarization: 110.10 SS G_CDS: -0.31 Total: 109.79 kcal Total: -76.37 -0.31 -76.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619471439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.830 kcal (2) G-P(sol) polarization free energy of solvation -76.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds