Wall clock time and date at job start Tue Mar 31 2020 22:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 110.64331 * 2 1 4 4 C 1.55158 * 110.87272 * 123.25030 * 2 1 3 5 5 C 1.55132 * 101.48684 * 82.76754 * 4 2 1 6 6 N 1.47431 * 104.72281 * 37.29541 * 5 4 2 7 7 S 1.65601 * 125.64901 * 155.82035 * 6 5 4 8 8 O 1.42092 * 106.40033 * 156.14737 * 7 6 5 9 9 O 1.42104 * 106.39898 * 23.22972 * 7 6 5 10 10 C 1.76203 * 107.21618 * 269.69121 * 7 6 5 11 11 C 1.38657 * 119.87307 * 269.97616 * 10 7 6 12 12 C 1.38608 * 120.49945 * 179.97438 * 11 10 7 13 13 C 1.37641 * 120.25184 * 0.04522 * 12 11 10 14 14 C 1.40698 * 119.73931 * 359.97438 * 13 12 11 15 15 C 1.41399 * 120.24219 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00092 * 155.22348 * 15 14 13 17 17 C 1.39949 * 120.00030 * 335.22614 * 15 14 13 18 18 N 1.30824 * 119.99671 * 342.31343 * 17 15 14 19 19 Si 1.86795 * 120.00175 * 162.31976 * 17 15 14 20 20 H 1.48503 * 109.47503 * 59.99544 * 19 17 15 21 21 H 1.48495 * 109.47423 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47170 * 299.99868 * 19 17 15 23 23 C 1.37596 * 119.87588 * 90.00008 * 10 7 6 24 24 C 1.47025 * 108.70315 * 335.55282 * 6 5 4 25 25 H 1.08997 * 109.87905 * 120.85704 * 24 6 5 26 26 C 1.50701 * 109.88164 * 241.87326 * 24 6 5 27 27 O 1.20822 * 120.00051 * 18.54741 * 26 24 6 28 28 O 1.34226 * 119.99331 * 198.54630 * 26 24 6 29 29 H 1.09000 * 109.47108 * 183.14151 * 1 2 3 30 30 H 1.09000 * 109.47289 * 303.14096 * 1 2 3 31 31 H 1.09005 * 109.47227 * 63.13968 * 1 2 3 32 32 H 1.09004 * 111.00225 * 201.00072 * 4 2 1 33 33 H 1.08988 * 111.00576 * 324.85571 * 4 2 1 34 34 H 1.08994 * 110.49510 * 278.45421 * 5 4 2 35 35 H 1.08998 * 110.34574 * 156.05598 * 5 4 2 36 36 H 1.08000 * 119.74730 * 0.02562 * 11 10 7 37 37 H 1.08002 * 119.87569 * 180.02562 * 12 11 10 38 38 H 1.08001 * 120.12950 * 179.97438 * 13 12 11 39 39 H 0.97001 * 119.99790 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.12384 * 0.27299 * 23 10 7 41 41 H 0.96706 * 116.99673 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0827 -0.7949 1.2124 5 6 2.0140 -2.2518 0.6839 6 7 2.3756 -2.1507 -0.7418 7 16 3.0078 -3.3707 -1.6660 8 8 2.6867 -3.0599 -3.0148 9 8 2.6292 -4.5876 -1.0375 10 6 4.7621 -3.2682 -1.5357 11 6 5.4774 -2.4935 -2.4361 12 6 6.8575 -2.4032 -2.3453 13 6 7.5336 -3.0842 -1.3585 14 6 6.8180 -3.8736 -0.4396 15 6 7.5018 -4.5781 0.5780 16 1 6.9880 -4.8426 1.4904 17 6 8.8443 -4.9324 0.4030 18 7 9.3697 -4.9333 -0.7951 19 14 9.8860 -5.4042 1.8800 20 1 9.2875 -6.5863 2.5506 21 1 11.2619 -5.7350 1.4300 22 1 9.9366 -4.2670 2.8337 23 6 5.4169 -3.9576 -0.5412 24 6 2.0760 -0.7891 -1.2087 25 1 2.9845 -0.3172 -1.5827 26 6 1.0377 -0.8385 -2.2999 27 8 0.3484 -1.8216 -2.4339 28 8 0.8789 0.2099 -3.1229 29 1 -0.3633 -1.0261 0.0563 30 1 -0.3634 0.5618 0.8605 31 1 -0.3634 0.4643 -0.9168 32 1 3.1096 -0.5045 1.4346 33 1 1.4446 -0.6678 2.0867 34 1 1.0051 -2.6498 0.7921 35 1 2.7297 -2.8810 1.2130 36 1 4.9551 -1.9557 -3.2136 37 1 7.4046 -1.7965 -3.0518 38 1 8.6090 -3.0127 -1.2898 39 1 10.3003 -5.1785 -0.9164 40 1 4.8582 -4.5643 0.1561 41 1 0.2006 0.1316 -3.8078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619471440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:57 Heat of formation + Delta-G solvation = -143.290887 kcal Electronic energy + Delta-G solvation = -28282.739165 eV Core-core repulsion = 24254.242845 eV Total energy + Delta-G solvation = -4028.496319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.72991 -38.31780 -37.67187 -36.69440 -35.96512 -35.28173 -33.87153 -32.49535 -30.14475 -30.07247 -29.82349 -26.95902 -25.51515 -23.82901 -22.03822 -21.59135 -21.03472 -20.32762 -18.75460 -18.15849 -18.00936 -17.19226 -16.60070 -16.01783 -15.82515 -15.44507 -15.20211 -14.84285 -14.70903 -14.16574 -13.68149 -13.50006 -13.41592 -13.31660 -12.92386 -12.62279 -12.58757 -12.45555 -11.95772 -11.73540 -11.59461 -11.51276 -11.44483 -11.40809 -11.37721 -11.22522 -11.09088 -11.05198 -10.94435 -10.88138 -10.64187 -10.43397 -9.82538 -9.68921 -9.36920 -8.97216 -8.07412 -7.73772 -6.94635 -4.56457 0.83922 2.15625 2.25953 2.60967 2.91127 2.98126 2.99994 3.05825 3.45264 3.80856 4.11502 4.25687 4.30454 4.47424 4.65027 4.85230 5.01932 5.15515 5.21297 5.25370 5.35866 5.46275 5.54519 5.61985 5.71976 5.77040 5.90124 5.98971 6.01749 6.13168 6.16261 6.34240 6.52651 6.61828 6.72994 6.86325 7.01602 7.18262 7.34585 7.68710 7.76764 7.90862 7.93297 8.36615 8.63932 8.68444 10.01120 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019136 B = 0.003598 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.886971 B = 7779.335181 C = 8220.582055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.085 4.085 3 H 0.102 0.898 4 C -0.125 4.125 5 C 0.120 3.880 6 N -0.993 5.993 7 S 2.699 3.301 8 O -0.962 6.962 9 O -0.959 6.959 10 C -0.633 4.633 11 C -0.148 4.148 12 C -0.120 4.120 13 C -0.117 4.117 14 C 0.093 3.907 15 C -0.461 4.461 16 H 0.083 0.917 17 C 0.075 3.925 18 N -0.793 5.793 19 Si 0.913 3.087 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.126 4.126 24 C 0.166 3.834 25 H 0.114 0.886 26 C 0.473 3.527 27 O -0.498 6.498 28 O -0.516 6.516 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.125 0.875 39 H 0.285 0.715 40 H 0.111 0.889 41 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.858 12.028 3.259 16.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.105 4.105 3 H 0.121 0.879 4 C -0.164 4.164 5 C -0.005 4.005 6 N -0.829 5.829 7 S 2.798 3.202 8 O -0.953 6.953 9 O -0.950 6.950 10 C -0.725 4.725 11 C -0.169 4.169 12 C -0.139 4.139 13 C -0.136 4.136 14 C 0.089 3.911 15 C -0.490 4.490 16 H 0.101 0.899 17 C -0.143 4.143 18 N -0.418 5.418 19 Si 0.737 3.263 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.187 1.187 23 C -0.148 4.148 24 C 0.057 3.943 25 H 0.131 0.869 26 C 0.312 3.688 27 O -0.384 6.384 28 O -0.328 6.328 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.143 0.857 39 H 0.096 0.904 40 H 0.129 0.871 41 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -11.029 11.011 2.862 15.845 hybrid contribution 0.871 -0.187 0.083 0.895 sum -10.158 10.825 2.946 15.134 Atomic orbital electron populations 1.22002 0.93948 1.03104 1.02369 1.22157 0.96517 0.99459 0.92335 0.87942 1.22948 1.02644 0.93868 0.96900 1.22101 1.01310 0.97822 0.79258 1.58777 1.78033 1.24002 1.22081 1.01564 0.74442 0.71867 0.72364 1.93510 1.84360 1.84018 1.33392 1.93524 1.83204 1.41271 1.77017 1.29828 1.22330 1.12580 1.07717 1.20069 0.94616 1.02819 0.99436 1.20810 0.93748 1.00479 0.98869 1.21647 1.00233 0.95753 0.96017 1.17672 0.90635 0.90412 0.92352 1.19578 0.95233 1.31554 1.02651 0.89920 1.25944 0.98362 0.93163 0.96865 1.69773 1.15047 1.34507 1.22471 0.86281 0.78472 0.80017 0.81538 1.18785 1.20221 1.18674 1.20742 0.95608 1.00587 0.97817 1.20852 0.96337 0.84940 0.92155 0.86874 1.23713 0.83563 0.80111 0.81410 1.90706 1.44870 1.32793 1.69989 1.84496 1.59506 1.44147 1.44650 0.91551 0.91299 0.92318 0.89427 0.89345 0.91015 0.89454 0.87731 0.88285 0.85705 0.90439 0.87074 0.73302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 8.21 37.15 0.30 -1.06 16 2 C -0.08 -0.78 3.54 -88.78 -0.31 -1.09 16 3 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.12 -1.12 6.59 -24.46 -0.16 -1.28 16 5 C 0.12 1.51 6.67 -2.40 -0.02 1.49 16 6 N -0.99 -15.65 3.05 -105.50 -0.32 -15.97 16 7 S 2.70 55.16 5.68 -107.50 -0.61 54.55 16 8 O -0.96 -21.30 14.87 -64.49 -0.96 -22.26 16 9 O -0.96 -21.82 16.85 -57.17 -0.96 -22.78 16 10 C -0.63 -14.09 5.97 -39.66 -0.24 -14.33 16 11 C -0.15 -3.24 9.53 -39.29 -0.37 -3.61 16 12 C -0.12 -2.67 10.02 -39.66 -0.40 -3.06 16 13 C -0.12 -2.87 8.70 -38.87 -0.34 -3.21 16 14 C 0.09 2.37 5.57 -106.82 -0.60 1.78 16 15 C -0.46 -11.66 9.05 -37.74 -0.34 -12.00 16 16 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 17 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 18 N -0.79 -19.64 10.97 55.55 0.61 -19.03 16 19 Si 0.91 17.78 29.59 -169.99 -5.03 12.75 16 20 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 21 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 23 C -0.13 -3.03 9.26 -38.88 -0.36 -3.39 16 24 C 0.17 2.18 3.51 -68.10 -0.24 1.94 16 25 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 26 C 0.47 6.79 4.31 36.01 0.16 6.94 16 27 O -0.50 -8.83 16.02 -24.60 -0.39 -9.23 16 28 O -0.52 -5.65 13.20 -39.25 -0.52 -6.17 16 29 H 0.07 0.69 7.38 -51.93 -0.38 0.31 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.52 6.84 -51.93 -0.36 0.16 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.59 8.04 -51.94 -0.42 0.17 16 34 H 0.07 0.86 7.69 -51.93 -0.40 0.46 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.10 2.08 7.60 -52.49 -0.40 1.68 16 37 H 0.10 1.92 8.06 -52.49 -0.42 1.49 16 38 H 0.13 3.11 6.18 -52.49 -0.32 2.79 16 39 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 40 H 0.11 2.56 7.60 -52.49 -0.40 2.16 16 41 H 0.41 2.84 9.10 45.56 0.41 3.26 16 LS Contribution 353.02 15.07 5.32 5.32 Total: -1.00 -33.60 353.02 -10.22 -43.82 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -4.35 Total: 8.18 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: -3.00 Total: -29.18 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.29 Total: -35.00 kcal Atomic # 8 Polarization: -57.59 SS G_CDS: -2.83 Total: -60.43 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Atomic # 16 Polarization: 55.16 SS G_CDS: -0.61 Total: 54.55 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.60 -10.22 -43.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619471440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.470 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds