Wall clock time and date at job start Tue Mar 31 2020 22:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 110.64331 * 2 1 4 4 C 1.55158 * 110.87272 * 123.25030 * 2 1 3 5 5 C 1.55132 * 101.48684 * 82.76754 * 4 2 1 6 6 N 1.47431 * 104.72281 * 37.29541 * 5 4 2 7 7 S 1.65601 * 125.64901 * 155.82035 * 6 5 4 8 8 O 1.42092 * 106.40033 * 156.14737 * 7 6 5 9 9 O 1.42104 * 106.39898 * 23.22972 * 7 6 5 10 10 C 1.76203 * 107.21618 * 269.69121 * 7 6 5 11 11 C 1.38657 * 119.87307 * 269.97616 * 10 7 6 12 12 C 1.38608 * 120.49945 * 179.97438 * 11 10 7 13 13 C 1.37641 * 120.25184 * 0.04522 * 12 11 10 14 14 C 1.40698 * 119.73931 * 359.97438 * 13 12 11 15 15 C 1.41399 * 120.24219 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00092 * 155.22348 * 15 14 13 17 17 C 1.39949 * 120.00030 * 335.22614 * 15 14 13 18 18 N 1.30824 * 119.99671 * 342.31343 * 17 15 14 19 19 Si 1.86795 * 120.00175 * 162.31976 * 17 15 14 20 20 H 1.48503 * 109.47503 * 59.99544 * 19 17 15 21 21 H 1.48495 * 109.47423 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47170 * 299.99868 * 19 17 15 23 23 C 1.37596 * 119.87588 * 90.00008 * 10 7 6 24 24 C 1.47025 * 108.70315 * 335.55282 * 6 5 4 25 25 H 1.08997 * 109.87905 * 120.85704 * 24 6 5 26 26 C 1.50701 * 109.88164 * 241.87326 * 24 6 5 27 27 O 1.20822 * 120.00051 * 18.54741 * 26 24 6 28 28 O 1.34226 * 119.99331 * 198.54630 * 26 24 6 29 29 H 1.09000 * 109.47108 * 183.14151 * 1 2 3 30 30 H 1.09000 * 109.47289 * 303.14096 * 1 2 3 31 31 H 1.09005 * 109.47227 * 63.13968 * 1 2 3 32 32 H 1.09004 * 111.00225 * 201.00072 * 4 2 1 33 33 H 1.08988 * 111.00576 * 324.85571 * 4 2 1 34 34 H 1.08994 * 110.49510 * 278.45421 * 5 4 2 35 35 H 1.08998 * 110.34574 * 156.05598 * 5 4 2 36 36 H 1.08000 * 119.74730 * 0.02562 * 11 10 7 37 37 H 1.08002 * 119.87569 * 180.02562 * 12 11 10 38 38 H 1.08001 * 120.12950 * 179.97438 * 13 12 11 39 39 H 0.97001 * 119.99790 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.12384 * 0.27299 * 23 10 7 41 41 H 0.96706 * 116.99673 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0827 -0.7949 1.2124 5 6 2.0140 -2.2518 0.6839 6 7 2.3756 -2.1507 -0.7418 7 16 3.0078 -3.3707 -1.6660 8 8 2.6867 -3.0599 -3.0148 9 8 2.6292 -4.5876 -1.0375 10 6 4.7621 -3.2682 -1.5357 11 6 5.4774 -2.4935 -2.4361 12 6 6.8575 -2.4032 -2.3453 13 6 7.5336 -3.0842 -1.3585 14 6 6.8180 -3.8736 -0.4396 15 6 7.5018 -4.5781 0.5780 16 1 6.9880 -4.8426 1.4904 17 6 8.8443 -4.9324 0.4030 18 7 9.3697 -4.9333 -0.7951 19 14 9.8860 -5.4042 1.8800 20 1 9.2875 -6.5863 2.5506 21 1 11.2619 -5.7350 1.4300 22 1 9.9366 -4.2670 2.8337 23 6 5.4169 -3.9576 -0.5412 24 6 2.0760 -0.7891 -1.2087 25 1 2.9845 -0.3172 -1.5827 26 6 1.0377 -0.8385 -2.2999 27 8 0.3484 -1.8216 -2.4339 28 8 0.8789 0.2099 -3.1229 29 1 -0.3633 -1.0261 0.0563 30 1 -0.3634 0.5618 0.8605 31 1 -0.3634 0.4643 -0.9168 32 1 3.1096 -0.5045 1.4346 33 1 1.4446 -0.6678 2.0867 34 1 1.0051 -2.6498 0.7921 35 1 2.7297 -2.8810 1.2130 36 1 4.9551 -1.9557 -3.2136 37 1 7.4046 -1.7965 -3.0518 38 1 8.6090 -3.0127 -1.2898 39 1 10.3003 -5.1785 -0.9164 40 1 4.8582 -4.5643 0.1561 41 1 0.2006 0.1316 -3.8078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619471440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:56 Heat of formation + Delta-G solvation = -166.211395 kcal Electronic energy + Delta-G solvation = -28283.733073 eV Core-core repulsion = 24254.242845 eV Total energy + Delta-G solvation = -4029.490227 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.76665 -39.49028 -39.28998 -38.38912 -37.07311 -36.95423 -35.68895 -33.45601 -31.95063 -31.63221 -31.04856 -27.81211 -27.36776 -24.82062 -23.72405 -22.84263 -22.72555 -21.22936 -20.28934 -19.63291 -19.11390 -18.67695 -17.90512 -17.49025 -17.05521 -16.95007 -16.62814 -16.48259 -16.08212 -15.37623 -15.14708 -15.08581 -14.63393 -14.35455 -14.27581 -13.84745 -13.76094 -13.55237 -13.38550 -13.32605 -13.26924 -13.13466 -13.08439 -12.89375 -12.66586 -12.58557 -12.49963 -12.27405 -12.22007 -11.86860 -11.68925 -11.59470 -11.45339 -11.37905 -11.14143 -10.22623 -9.88851 -9.59469 -8.74154 -6.47032 -0.73719 0.34734 0.81702 1.18388 1.38471 1.47383 1.51433 1.84162 2.11229 2.18310 2.54914 2.77132 3.06004 3.34068 3.49353 3.66503 3.88078 4.14901 4.24464 4.30443 4.36476 4.38842 4.48109 4.60900 4.72448 4.76929 4.81026 4.86983 4.92725 4.99814 5.06715 5.13844 5.17781 5.22114 5.32722 5.38736 5.42640 5.52558 5.61233 5.84922 5.90794 6.07462 6.49861 6.77856 6.81775 6.97474 8.24056 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019136 B = 0.003598 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.886971 B = 7779.335181 C = 8220.582055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.075 4.075 3 H 0.137 0.863 4 C -0.112 4.112 5 C 0.103 3.897 6 N -0.992 5.992 7 S 2.720 3.280 8 O -0.982 6.982 9 O -0.991 6.991 10 C -0.636 4.636 11 C -0.149 4.149 12 C -0.119 4.119 13 C -0.137 4.137 14 C 0.066 3.934 15 C -0.496 4.496 16 H 0.083 0.917 17 C 0.037 3.963 18 N -0.824 5.824 19 Si 0.986 3.014 20 H -0.262 1.262 21 H -0.267 1.267 22 H -0.255 1.255 23 C -0.146 4.146 24 C 0.149 3.851 25 H 0.127 0.873 26 C 0.473 3.527 27 O -0.541 6.541 28 O -0.505 6.505 29 H 0.044 0.956 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.116 0.884 39 H 0.293 0.707 40 H 0.108 0.892 41 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.036 14.307 4.264 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.094 4.094 3 H 0.155 0.845 4 C -0.151 4.151 5 C -0.020 4.020 6 N -0.831 5.831 7 S 2.817 3.183 8 O -0.972 6.972 9 O -0.981 6.981 10 C -0.726 4.726 11 C -0.170 4.170 12 C -0.138 4.138 13 C -0.157 4.157 14 C 0.063 3.937 15 C -0.525 4.525 16 H 0.101 0.899 17 C -0.179 4.179 18 N -0.449 5.449 19 Si 0.806 3.194 20 H -0.186 1.186 21 H -0.192 1.192 22 H -0.179 1.179 23 C -0.167 4.167 24 C 0.041 3.959 25 H 0.144 0.856 26 C 0.315 3.685 27 O -0.430 6.430 28 O -0.317 6.317 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.138 0.862 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.134 0.866 39 H 0.103 0.897 40 H 0.126 0.874 41 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -11.195 13.313 3.837 17.813 hybrid contribution 0.790 -0.798 -0.327 1.170 sum -10.405 12.515 3.510 16.649 Atomic orbital electron populations 1.22012 0.93589 1.02192 1.03529 1.22293 0.96718 1.00353 0.90076 0.84534 1.22978 1.03855 0.90556 0.97687 1.22457 1.01165 1.00816 0.77580 1.58370 1.77128 1.24465 1.23173 1.00720 0.73533 0.72003 0.72068 1.93473 1.84212 1.84500 1.35010 1.93476 1.83265 1.43857 1.77546 1.30180 1.23928 1.11652 1.06874 1.20413 0.94682 1.02403 0.99508 1.21141 0.94179 0.99945 0.98509 1.21671 0.99966 0.96903 0.97161 1.18022 0.91505 0.91082 0.93107 1.19868 0.96663 1.32972 1.03016 0.89906 1.26801 0.98902 0.92517 0.99682 1.69817 1.15779 1.34986 1.24355 0.85188 0.76783 0.79745 0.77684 1.18586 1.19158 1.17854 1.20793 0.95387 1.01632 0.98858 1.21389 0.96953 0.83750 0.93796 0.85565 1.23977 0.83092 0.79878 0.81578 1.90698 1.46603 1.34456 1.71245 1.84450 1.60026 1.42596 1.44664 0.93728 0.88482 0.92593 0.88795 0.86238 0.90721 0.90248 0.85438 0.85210 0.86606 0.89652 0.87372 0.71253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 8.21 71.98 0.59 -1.67 16 2 C -0.07 -1.11 3.54 -9.60 -0.03 -1.15 16 3 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 4 C -0.11 -1.66 6.59 32.06 0.21 -1.45 16 5 C 0.10 2.53 6.67 86.93 0.58 3.11 16 6 N -0.99 -30.68 3.05 -487.68 -1.49 -32.17 16 7 S 2.72 112.43 5.68 -56.49 -0.32 112.11 16 8 O -0.98 -43.53 14.87 -121.01 -1.80 -45.33 16 9 O -0.99 -46.49 16.85 -128.00 -2.16 -48.65 16 10 C -0.64 -28.67 5.97 22.22 0.13 -28.54 16 11 C -0.15 -6.43 9.53 22.46 0.21 -6.21 16 12 C -0.12 -5.23 10.02 22.22 0.22 -5.00 16 13 C -0.14 -6.88 8.70 22.73 0.20 -6.68 16 14 C 0.07 3.49 5.57 -21.29 -0.12 3.37 16 15 C -0.50 -25.87 9.05 23.46 0.21 -25.66 16 16 H 0.08 4.12 7.91 -2.91 -0.02 4.10 16 17 C 0.04 1.77 5.14 85.26 0.44 2.21 16 18 N -0.82 -41.45 10.97 21.83 0.24 -41.21 16 19 Si 0.99 36.37 29.59 68.60 2.03 38.40 16 20 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 21 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 22 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 23 C -0.15 -7.23 9.26 22.73 0.21 -7.02 16 24 C 0.15 3.61 3.51 44.60 0.16 3.77 16 25 H 0.13 2.70 8.14 -2.39 -0.02 2.69 16 26 C 0.47 12.92 4.31 71.24 0.31 13.23 16 27 O -0.54 -19.07 16.02 27.57 0.44 -18.62 16 28 O -0.50 -9.91 13.20 -51.38 -0.68 -10.59 16 29 H 0.04 0.85 7.38 -2.39 -0.02 0.83 16 30 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.84 6.84 -2.38 -0.02 0.83 16 32 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.12 1.09 8.04 -2.39 -0.02 1.07 16 34 H 0.07 1.76 7.69 -2.39 -0.02 1.74 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.13 4.85 7.60 -2.91 -0.02 4.83 16 37 H 0.13 4.80 8.06 -2.91 -0.02 4.77 16 38 H 0.12 5.92 6.18 -2.91 -0.02 5.91 16 39 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 40 H 0.11 5.26 7.60 -2.91 -0.02 5.23 16 41 H 0.43 5.08 9.10 -74.05 -0.67 4.41 16 Total: -1.00 -75.22 353.02 -0.01 -75.22 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.40 Total: 28.53 kcal Atomic # 6 Polarization: -61.02 SS G_CDS: 3.32 Total: -57.69 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -1.25 Total: -73.38 kcal Atomic # 8 Polarization: -119.00 SS G_CDS: -4.19 Total: -123.19 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.40 kcal Atomic # 16 Polarization: 112.43 SS G_CDS: -0.32 Total: 112.11 kcal Total: -75.22 -0.01 -75.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619471440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.986 kcal (2) G-P(sol) polarization free energy of solvation -75.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds