Wall clock time and date at job start Tue Mar 31 2020 22:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34234 * 116.99813 * 2 1 4 4 O 1.20830 * 119.99887 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99727 * 180.02562 * 3 2 1 6 6 H 1.09006 * 109.99528 * 301.08830 * 5 3 2 7 7 C 1.54323 * 109.88637 * 62.18822 * 5 3 2 8 8 C 1.55164 * 102.93832 * 141.61009 * 7 5 3 9 9 C 1.55120 * 101.48826 * 324.33330 * 8 7 5 10 10 N 1.47025 * 109.88160 * 180.02562 * 5 3 2 11 11 S 1.65602 * 125.64873 * 61.59841 * 10 5 3 12 12 O 1.42099 * 106.40352 * 336.46661 * 11 10 5 13 13 O 1.42098 * 106.40447 * 203.53974 * 11 10 5 14 14 C 1.76202 * 107.21636 * 90.00439 * 11 10 5 15 15 C 1.38653 * 119.87760 * 89.99994 * 14 11 10 16 16 C 1.38613 * 120.50228 * 180.02562 * 15 14 11 17 17 C 1.37635 * 120.25143 * 0.02562 * 16 15 14 18 18 C 1.40703 * 119.74252 * 0.02562 * 17 16 15 19 19 C 1.41393 * 120.24665 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00447 * 204.38926 * 19 18 17 21 21 C 1.39947 * 119.99794 * 24.38730 * 19 18 17 22 22 N 1.30822 * 120.00133 * 17.85924 * 21 19 18 23 23 Si 1.86803 * 120.00032 * 197.86036 * 21 19 18 24 24 H 1.48500 * 109.47058 * 59.99573 * 23 21 19 25 25 H 1.48494 * 109.47315 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47012 * 300.00381 * 23 21 19 27 27 C 1.37601 * 119.87452 * 270.02374 * 14 11 10 28 28 H 1.09001 * 109.47245 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47205 * 300.00370 * 1 2 3 30 30 H 1.09003 * 109.46698 * 60.00111 * 1 2 3 31 31 H 1.08994 * 110.72190 * 259.97121 * 7 5 3 32 32 H 1.08993 * 110.71912 * 23.07248 * 7 5 3 33 33 H 1.08998 * 111.00403 * 82.57683 * 8 7 5 34 34 H 1.09003 * 110.99949 * 206.42686 * 8 7 5 35 35 H 1.09004 * 110.49718 * 278.45491 * 9 8 7 36 36 H 1.09002 * 110.34548 * 156.06071 * 9 8 7 37 37 H 1.08002 * 119.74944 * 0.02562 * 15 14 11 38 38 H 1.08002 * 119.87618 * 179.74310 * 16 15 14 39 39 H 1.07996 * 120.13220 * 179.97438 * 17 16 15 40 40 H 0.97002 * 119.99573 * 180.02562 * 22 21 19 41 41 H 1.07993 * 120.12718 * 359.94812 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9665 0.7660 0.8764 7 6 4.1254 0.6265 -1.2845 8 6 5.3111 1.5562 -1.6553 9 6 4.7601 2.9431 -1.2321 10 7 3.9933 2.6818 0.0002 11 16 3.6616 3.7905 1.1847 12 8 2.4967 3.3267 1.8536 13 8 3.7490 5.0699 0.5727 14 6 4.9742 3.7092 2.3574 15 6 6.0910 4.5159 2.2010 16 6 7.1314 4.4621 3.1154 17 6 7.0662 3.6049 4.1902 18 6 5.9382 2.7809 4.3585 19 6 5.8604 1.8960 5.4585 20 1 5.2378 1.0155 5.4003 21 6 6.5902 2.1611 6.6228 22 7 7.0566 3.3634 6.8430 23 14 6.8986 0.7982 7.8625 24 1 7.6512 -0.3033 7.2102 25 1 7.6895 1.3332 8.9998 26 1 5.5996 0.2813 8.3632 27 6 4.8872 2.8451 3.4247 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 4.4770 -0.3855 -1.0838 32 1 3.3735 0.6226 -2.0735 33 1 6.2039 1.2965 -1.0865 34 1 5.5100 1.5271 -2.7266 35 1 4.1080 3.3473 -2.0065 36 1 5.5809 3.6311 -1.0291 37 1 6.1508 5.1912 1.3602 38 1 7.9984 5.0920 2.9814 39 1 7.8781 3.5643 4.9013 40 1 7.5628 3.5470 7.6498 41 1 4.0163 2.2181 3.5449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619474793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:19 Heat of formation + Delta-G solvation = -130.782916 kcal Electronic energy + Delta-G solvation = -28143.371385 eV Core-core repulsion = 24115.417452 eV Total energy + Delta-G solvation = -4027.953933 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.58015 -38.20711 -37.64918 -36.67018 -36.14071 -35.17997 -33.85837 -30.98496 -30.19460 -30.08045 -29.79287 -27.45158 -25.49828 -23.55642 -21.93418 -21.61805 -21.03014 -20.89370 -18.78588 -18.25310 -17.68136 -17.10528 -16.59160 -16.08621 -15.82660 -15.69723 -15.17106 -14.78200 -14.61506 -13.92302 -13.71260 -13.56849 -13.40395 -13.28859 -13.10662 -12.83138 -12.57401 -12.16071 -11.93690 -11.81718 -11.53789 -11.50717 -11.39568 -11.36978 -11.31236 -11.24767 -11.06214 -11.03689 -10.86158 -10.70452 -10.62445 -10.35068 -9.79689 -9.65807 -9.35558 -8.95369 -8.04930 -7.72195 -6.93459 -4.54983 0.90342 2.18861 2.32000 2.62397 2.65466 2.98636 3.00590 3.06764 3.47977 3.81665 4.24801 4.31324 4.34311 4.49586 4.72468 4.93653 4.99016 5.09879 5.12170 5.19825 5.34388 5.37654 5.51135 5.55245 5.63075 5.68199 5.71079 5.99815 6.01817 6.08336 6.17193 6.35524 6.42962 6.63348 6.74977 6.88942 7.03239 7.20387 7.37030 7.70945 7.78337 7.84335 7.92759 8.38196 8.65400 8.70170 10.02129 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012984 B = 0.004065 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.946635 B = 6885.989973 C = 7778.161640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.443 3.557 4 O -0.477 6.477 5 C 0.163 3.837 6 H 0.119 0.881 7 C -0.112 4.112 8 C -0.130 4.130 9 C 0.119 3.881 10 N -0.995 5.995 11 S 2.700 3.300 12 O -0.949 6.949 13 O -0.966 6.966 14 C -0.634 4.634 15 C -0.147 4.147 16 C -0.120 4.120 17 C -0.117 4.117 18 C 0.093 3.907 19 C -0.461 4.461 20 H 0.082 0.918 21 C 0.075 3.925 22 N -0.793 5.793 23 Si 0.913 3.087 24 H -0.262 1.262 25 H -0.277 1.277 26 H -0.264 1.264 27 C -0.128 4.128 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.125 0.875 40 H 0.284 0.716 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.392 -8.083 -13.819 16.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.275 6.275 3 C 0.282 3.718 4 O -0.361 6.361 5 C 0.054 3.946 6 H 0.137 0.863 7 C -0.151 4.151 8 C -0.169 4.169 9 C -0.005 4.005 10 N -0.831 5.831 11 S 2.798 3.202 12 O -0.939 6.939 13 O -0.957 6.957 14 C -0.725 4.725 15 C -0.169 4.169 16 C -0.140 4.140 17 C -0.137 4.137 18 C 0.089 3.911 19 C -0.490 4.490 20 H 0.100 0.900 21 C -0.143 4.143 22 N -0.418 5.418 23 Si 0.737 3.263 24 H -0.187 1.187 25 H -0.202 1.202 26 H -0.188 1.188 27 C -0.149 4.149 28 H 0.118 0.882 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.143 0.857 40 H 0.095 0.905 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.300 -7.001 -13.566 15.619 hybrid contribution 0.517 -0.550 1.170 1.392 sum -2.784 -7.550 -12.397 14.780 Atomic orbital electron populations 1.23247 0.76499 1.03363 1.02714 1.86459 1.23299 1.33174 1.84605 1.24176 0.92382 0.81845 0.73416 1.90707 1.66552 1.36137 1.42726 1.20802 0.86564 0.84148 1.03055 0.86345 1.22575 0.98149 0.99905 0.94510 1.22883 0.98043 0.93781 1.02147 1.22086 0.94947 0.97834 0.85671 1.58854 1.68042 1.21277 1.34886 1.01588 0.74164 0.72062 0.72386 1.93556 1.45574 1.80922 1.73878 1.93497 1.87604 1.37709 1.76891 1.29909 1.17107 1.10242 1.15282 1.20082 0.94495 1.01213 1.01083 1.20814 0.97641 0.99647 0.95865 1.21649 0.98320 0.97368 0.96392 1.17673 0.89953 0.91723 0.91747 1.19571 1.24198 1.08079 0.97165 0.89971 1.25942 0.93348 0.95969 0.99060 1.69776 1.26456 1.19874 1.25683 0.86286 0.79588 0.81336 0.79125 1.18670 1.20217 1.18811 1.20721 0.98223 0.99714 0.96238 0.88239 0.91590 0.92177 0.88532 0.90230 0.89571 0.89535 0.91208 0.89687 0.87673 0.88314 0.85686 0.90456 0.87235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.44 16 2 O -0.36 -4.73 10.54 -39.27 -0.41 -5.14 16 3 C 0.44 6.96 6.60 36.00 0.24 7.19 16 4 O -0.48 -9.21 13.65 -26.35 -0.36 -9.57 16 5 C 0.16 2.23 3.58 -68.11 -0.24 1.99 16 6 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 7 C -0.11 -1.02 6.45 -24.89 -0.16 -1.18 16 8 C -0.13 -1.11 7.10 -24.46 -0.17 -1.29 16 9 C 0.12 1.45 6.99 -2.39 -0.02 1.44 16 10 N -1.00 -15.87 3.13 -105.47 -0.33 -16.20 16 11 S 2.70 55.95 5.57 -107.50 -0.60 55.36 16 12 O -0.95 -22.06 14.15 -66.56 -0.94 -23.00 16 13 O -0.97 -21.56 16.85 -57.17 -0.96 -22.53 16 14 C -0.63 -14.28 5.97 -39.66 -0.24 -14.52 16 15 C -0.15 -3.26 9.53 -39.29 -0.37 -3.63 16 16 C -0.12 -2.70 10.02 -39.66 -0.40 -3.10 16 17 C -0.12 -2.91 8.70 -38.87 -0.34 -3.25 16 18 C 0.09 2.39 5.58 -106.82 -0.60 1.79 16 19 C -0.46 -11.75 9.05 -37.74 -0.34 -12.10 16 20 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 21 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 22 N -0.79 -19.75 10.95 55.55 0.61 -19.14 16 23 Si 0.91 17.90 29.60 -169.99 -5.03 12.87 16 24 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 25 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 26 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 27 C -0.13 -3.10 9.26 -38.87 -0.36 -3.46 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 30 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.66 7.84 -51.93 -0.41 0.26 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.11 2.10 7.60 -52.49 -0.40 1.70 16 38 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.13 3.14 6.16 -52.49 -0.32 2.81 16 40 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 41 H 0.11 2.56 7.60 -52.49 -0.40 2.16 16 LS Contribution 356.99 15.07 5.38 5.38 Total: -1.00 -33.63 356.99 -9.98 -43.61 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.30 Total: 5.32 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: -2.02 Total: -26.95 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.28 Total: -35.35 kcal Atomic # 8 Polarization: -57.55 SS G_CDS: -2.68 Total: -60.23 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: 55.95 SS G_CDS: -0.60 Total: 55.36 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.63 -9.98 -43.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619474793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.174 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds