Wall clock time and date at job start Tue Mar 31 2020 22:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34234 * 116.99813 * 2 1 4 4 O 1.20830 * 119.99887 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99727 * 180.02562 * 3 2 1 6 6 H 1.09006 * 109.99528 * 301.08830 * 5 3 2 7 7 C 1.54323 * 109.88637 * 62.18822 * 5 3 2 8 8 C 1.55164 * 102.93832 * 141.61009 * 7 5 3 9 9 C 1.55120 * 101.48826 * 324.33330 * 8 7 5 10 10 N 1.47025 * 109.88160 * 180.02562 * 5 3 2 11 11 S 1.65602 * 125.64873 * 61.59841 * 10 5 3 12 12 O 1.42099 * 106.40352 * 336.46661 * 11 10 5 13 13 O 1.42098 * 106.40447 * 203.53974 * 11 10 5 14 14 C 1.76202 * 107.21636 * 90.00439 * 11 10 5 15 15 C 1.38653 * 119.87760 * 89.99994 * 14 11 10 16 16 C 1.38613 * 120.50228 * 180.02562 * 15 14 11 17 17 C 1.37635 * 120.25143 * 0.02562 * 16 15 14 18 18 C 1.40703 * 119.74252 * 0.02562 * 17 16 15 19 19 C 1.41393 * 120.24665 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00447 * 204.38926 * 19 18 17 21 21 C 1.39947 * 119.99794 * 24.38730 * 19 18 17 22 22 N 1.30822 * 120.00133 * 17.85924 * 21 19 18 23 23 Si 1.86803 * 120.00032 * 197.86036 * 21 19 18 24 24 H 1.48500 * 109.47058 * 59.99573 * 23 21 19 25 25 H 1.48494 * 109.47315 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47012 * 300.00381 * 23 21 19 27 27 C 1.37601 * 119.87452 * 270.02374 * 14 11 10 28 28 H 1.09001 * 109.47245 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47205 * 300.00370 * 1 2 3 30 30 H 1.09003 * 109.46698 * 60.00111 * 1 2 3 31 31 H 1.08994 * 110.72190 * 259.97121 * 7 5 3 32 32 H 1.08993 * 110.71912 * 23.07248 * 7 5 3 33 33 H 1.08998 * 111.00403 * 82.57683 * 8 7 5 34 34 H 1.09003 * 110.99949 * 206.42686 * 8 7 5 35 35 H 1.09004 * 110.49718 * 278.45491 * 9 8 7 36 36 H 1.09002 * 110.34548 * 156.06071 * 9 8 7 37 37 H 1.08002 * 119.74944 * 0.02562 * 15 14 11 38 38 H 1.08002 * 119.87618 * 179.74310 * 16 15 14 39 39 H 1.07996 * 120.13220 * 179.97438 * 17 16 15 40 40 H 0.97002 * 119.99573 * 180.02562 * 22 21 19 41 41 H 1.07993 * 120.12718 * 359.94812 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9665 0.7660 0.8764 7 6 4.1254 0.6265 -1.2845 8 6 5.3111 1.5562 -1.6553 9 6 4.7601 2.9431 -1.2321 10 7 3.9933 2.6818 0.0002 11 16 3.6616 3.7905 1.1847 12 8 2.4967 3.3267 1.8536 13 8 3.7490 5.0699 0.5727 14 6 4.9742 3.7092 2.3574 15 6 6.0910 4.5159 2.2010 16 6 7.1314 4.4621 3.1154 17 6 7.0662 3.6049 4.1902 18 6 5.9382 2.7809 4.3585 19 6 5.8604 1.8960 5.4585 20 1 5.2378 1.0155 5.4003 21 6 6.5902 2.1611 6.6228 22 7 7.0566 3.3634 6.8430 23 14 6.8986 0.7982 7.8625 24 1 7.6512 -0.3033 7.2102 25 1 7.6895 1.3332 8.9998 26 1 5.5996 0.2813 8.3632 27 6 4.8872 2.8451 3.4247 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 4.4770 -0.3855 -1.0838 32 1 3.3735 0.6226 -2.0735 33 1 6.2039 1.2965 -1.0865 34 1 5.5100 1.5271 -2.7266 35 1 4.1080 3.3473 -2.0065 36 1 5.5809 3.6311 -1.0291 37 1 6.1508 5.1912 1.3602 38 1 7.9984 5.0920 2.9814 39 1 7.8781 3.5643 4.9013 40 1 7.5628 3.5470 7.6498 41 1 4.0163 2.2181 3.5449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619474793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:18 Heat of formation + Delta-G solvation = -152.252252 kcal Electronic energy + Delta-G solvation = -28144.302365 eV Core-core repulsion = 24115.417452 eV Total energy + Delta-G solvation = -4028.884913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.72706 -39.48402 -39.20983 -38.34772 -37.37915 -36.90773 -35.69275 -32.00061 -31.94948 -31.61346 -31.16146 -28.34551 -27.36874 -24.61387 -23.67402 -22.85836 -22.50489 -22.05931 -20.29536 -19.76747 -18.86151 -18.69179 -17.83700 -17.60599 -17.17485 -17.02692 -16.73857 -16.51278 -16.04166 -15.32634 -15.09970 -14.96122 -14.72811 -14.43092 -14.33905 -14.13028 -13.78919 -13.71459 -13.32116 -13.21796 -13.12478 -13.07798 -13.03750 -12.88856 -12.72981 -12.68096 -12.57891 -12.21835 -12.10203 -11.82089 -11.78319 -11.59670 -11.45598 -11.36566 -11.14411 -10.22528 -9.88287 -9.59747 -8.74504 -6.47313 -0.68715 0.35997 0.81655 1.13260 1.37758 1.46831 1.50933 1.58988 2.04952 2.17776 2.55405 2.81367 3.12713 3.38750 3.50743 3.67380 3.87319 4.03362 4.23965 4.27749 4.30913 4.33741 4.39671 4.54307 4.60708 4.69520 4.79654 4.84142 4.86546 4.90044 4.95335 5.04587 5.13153 5.17862 5.29930 5.33552 5.37604 5.42332 5.53312 5.85298 5.90499 6.07555 6.49626 6.68245 6.77494 6.81744 8.23573 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012984 B = 0.004065 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.946635 B = 6885.989973 C = 7778.161640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.440 3.560 4 O -0.522 6.522 5 C 0.150 3.850 6 H 0.122 0.878 7 C -0.102 4.102 8 C -0.116 4.116 9 C 0.102 3.898 10 N -0.995 5.995 11 S 2.721 3.279 12 O -0.981 6.981 13 O -0.986 6.986 14 C -0.638 4.638 15 C -0.150 4.150 16 C -0.119 4.119 17 C -0.138 4.138 18 C 0.066 3.934 19 C -0.496 4.496 20 H 0.082 0.918 21 C 0.037 3.963 22 N -0.823 5.823 23 Si 0.986 3.014 24 H -0.254 1.254 25 H -0.267 1.267 26 H -0.262 1.262 27 C -0.147 4.147 28 H 0.140 0.860 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.117 0.883 40 H 0.293 0.707 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.394 -9.844 -15.337 18.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.281 3.719 4 O -0.410 6.410 5 C 0.041 3.959 6 H 0.140 0.860 7 C -0.141 4.141 8 C -0.155 4.155 9 C -0.022 4.022 10 N -0.834 5.834 11 S 2.817 3.183 12 O -0.971 6.971 13 O -0.977 6.977 14 C -0.727 4.727 15 C -0.170 4.170 16 C -0.138 4.138 17 C -0.158 4.158 18 C 0.063 3.937 19 C -0.525 4.525 20 H 0.100 0.900 21 C -0.179 4.179 22 N -0.449 5.449 23 Si 0.806 3.194 24 H -0.178 1.178 25 H -0.191 1.191 26 H -0.186 1.186 27 C -0.168 4.168 28 H 0.158 0.842 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.144 0.856 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.140 0.860 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.135 0.865 40 H 0.104 0.896 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.283 -8.763 -15.083 17.593 hybrid contribution 0.128 0.012 1.515 1.521 sum -2.154 -8.751 -13.568 16.288 Atomic orbital electron populations 1.23555 0.75030 1.05830 1.02153 1.86456 1.24743 1.31788 1.83901 1.24659 0.93260 0.81818 0.72117 1.90688 1.67620 1.37597 1.45068 1.21273 0.85577 0.83051 1.05967 0.86005 1.22694 0.98352 1.00905 0.92104 1.22912 0.97558 0.90720 1.04283 1.22529 0.94939 1.00558 0.84148 1.58458 1.68469 1.21818 1.34633 1.00743 0.73124 0.72124 0.72314 1.93510 1.46875 1.81503 1.75226 1.93459 1.87668 1.39504 1.77046 1.30265 1.17791 1.09295 1.15367 1.20443 0.94054 1.01013 1.01533 1.21150 0.98770 0.99068 0.94832 1.21676 0.98117 0.98604 0.97396 1.18025 0.90757 0.92466 0.92494 1.19853 1.25811 1.08596 0.98252 0.90020 1.26806 0.92363 0.98215 1.00531 1.69818 1.26807 1.21576 1.26686 0.85187 0.79495 0.78108 0.76594 1.17821 1.19085 1.18646 1.20751 0.98099 1.00834 0.97117 0.84228 0.93370 0.91625 0.85629 0.89078 0.89142 0.86025 0.90446 0.89554 0.85324 0.85189 0.86546 0.89639 0.87681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.35 -8.90 10.54 -51.46 -0.54 -9.45 16 3 C 0.44 13.67 6.60 71.23 0.47 14.14 16 4 O -0.52 -20.52 13.65 29.22 0.40 -20.12 16 5 C 0.15 3.91 3.58 44.59 0.16 4.07 16 6 H 0.12 3.07 8.14 -2.38 -0.02 3.05 16 7 C -0.10 -1.50 6.45 31.79 0.20 -1.30 16 8 C -0.12 -1.56 7.10 32.06 0.23 -1.34 16 9 C 0.10 2.27 6.99 86.92 0.61 2.88 16 10 N -1.00 -31.07 3.13 -487.60 -1.53 -32.59 16 11 S 2.72 114.34 5.57 -56.49 -0.31 114.03 16 12 O -0.98 -47.22 14.15 -119.03 -1.68 -48.91 16 13 O -0.99 -44.19 16.85 -128.00 -2.16 -46.35 16 14 C -0.64 -29.16 5.97 22.22 0.13 -29.02 16 15 C -0.15 -6.54 9.53 22.46 0.21 -6.32 16 16 C -0.12 -5.31 10.02 22.22 0.22 -5.09 16 17 C -0.14 -6.99 8.70 22.73 0.20 -6.80 16 18 C 0.07 3.51 5.58 -21.29 -0.12 3.39 16 19 C -0.50 -26.10 9.05 23.46 0.21 -25.89 16 20 H 0.08 4.12 7.91 -2.91 -0.02 4.09 16 21 C 0.04 1.78 5.14 85.26 0.44 2.22 16 22 N -0.82 -41.67 10.95 21.83 0.24 -41.43 16 23 Si 0.99 36.62 29.60 68.60 2.03 38.65 16 24 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16 25 H -0.27 -9.34 7.11 99.48 0.71 -8.64 16 26 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 27 C -0.15 -7.39 9.26 22.73 0.21 -7.18 16 28 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.14 8.13 -2.39 -0.02 1.12 16 30 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 31 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 1.18 7.84 -2.39 -0.02 1.16 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.13 4.95 7.60 -2.91 -0.02 4.93 16 38 H 0.13 4.86 8.06 -2.91 -0.02 4.83 16 39 H 0.12 6.00 6.16 -2.91 -0.02 5.98 16 40 H 0.29 13.32 8.30 -92.71 -0.77 12.55 16 41 H 0.11 5.21 7.60 -2.91 -0.02 5.18 16 Total: -1.00 -76.01 356.99 1.87 -74.14 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 1.05 Total: 26.52 kcal Atomic # 6 Polarization: -58.86 SS G_CDS: 4.38 Total: -54.49 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -1.29 Total: -74.03 kcal Atomic # 8 Polarization: -120.84 SS G_CDS: -3.98 Total: -124.83 kcal Atomic # 14 Polarization: 36.62 SS G_CDS: 2.03 Total: 38.65 kcal Atomic # 16 Polarization: 114.34 SS G_CDS: -0.31 Total: 114.03 kcal Total: -76.01 1.87 -74.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619474793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.109 kcal (2) G-P(sol) polarization free energy of solvation -76.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds