Wall clock time and date at job start Tue Mar 31 2020 22:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21246 * 119.99741 * 2 1 4 4 C 1.47166 * 119.99734 * 179.97438 * 2 1 3 5 5 C 1.39855 * 120.17569 * 0.30110 * 4 2 1 6 6 C 1.37879 * 119.82632 * 180.20803 * 5 4 2 7 7 C 1.38412 * 120.17179 * 359.51092 * 6 5 4 8 8 S 1.76194 * 119.82594 * 180.25646 * 7 6 5 9 9 O 1.42090 * 106.40434 * 203.54021 * 8 7 6 10 10 O 1.42108 * 106.40274 * 336.46361 * 8 7 6 11 11 N 1.65600 * 107.21827 * 90.00057 * 8 7 6 12 12 C 1.47020 * 125.64913 * 269.69354 * 11 8 7 13 13 C 1.54340 * 107.26526 * 178.85050 * 12 11 8 14 14 C 1.55154 * 103.02166 * 338.13862 * 13 12 11 15 15 O 1.42899 * 111.00386 * 277.23486 * 14 13 12 16 16 C 1.50698 * 111.03842 * 153.39742 * 14 13 12 17 17 H 1.08006 * 119.99832 * 247.78353 * 16 14 13 18 18 C 1.37869 * 119.99883 * 67.78799 * 16 14 13 19 19 N 1.31512 * 120.00292 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 120.00086 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46847 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47192 * 119.99427 * 20 18 16 23 23 H 1.48497 * 109.47379 * 239.99864 * 20 18 16 24 24 C 1.47422 * 125.64768 * 90.00059 * 11 8 7 25 25 C 1.38404 * 120.34704 * 0.23667 * 7 6 5 26 26 C 1.37883 * 120.17310 * 359.97438 * 25 7 6 27 27 H 1.09000 * 109.47306 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47333 * 300.00360 * 1 2 3 29 29 H 1.08999 * 109.47438 * 60.00438 * 1 2 3 30 30 H 1.07998 * 120.08487 * 359.97175 * 5 4 2 31 31 H 1.08002 * 119.91724 * 179.79502 * 6 5 4 32 32 H 1.09006 * 109.88402 * 298.39209 * 12 11 8 33 33 H 1.09002 * 109.88277 * 59.55953 * 12 11 8 34 34 H 1.09005 * 110.84757 * 219.67082 * 13 12 11 35 35 H 1.08993 * 110.66755 * 96.52392 * 13 12 11 36 36 H 0.96700 * 114.00543 * 292.19318 * 15 14 13 37 37 H 0.97005 * 120.00032 * 179.97438 * 19 18 16 38 38 H 1.09005 * 110.36619 * 322.92928 * 24 11 8 39 39 H 1.08996 * 110.37119 * 85.14511 * 24 11 8 40 40 H 1.07996 * 119.91307 * 180.02562 * 25 7 6 41 41 H 1.08002 * 120.08942 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2428 -1.2745 0.0006 5 6 1.5472 -2.4878 -0.0052 6 6 2.2438 -3.6777 -0.0003 7 6 3.6279 -3.6735 0.0001 8 16 4.5088 -5.1994 -0.0004 9 8 5.7915 -4.9224 0.5445 10 8 3.6269 -6.1721 0.5432 11 7 4.7545 -5.6231 -1.5823 12 6 3.8500 -6.4449 -2.3997 13 6 4.4731 -6.5497 -3.8078 14 6 5.4157 -5.3187 -3.8655 15 8 4.6942 -4.1372 -4.2198 16 6 6.5584 -5.5565 -4.8188 17 1 7.5660 -5.6500 -4.4413 18 6 6.3176 -5.6547 -6.1727 19 7 5.0906 -5.5412 -6.6323 20 14 7.7339 -5.9502 -7.3543 21 1 9.0045 -6.0406 -6.5911 22 1 7.5072 -7.2193 -8.0913 23 1 7.8161 -4.8250 -8.3199 24 6 5.9194 -5.2439 -2.4024 25 6 4.3235 -2.4770 0.0006 26 6 3.6413 -1.2787 0.0001 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 0.4672 -2.4927 -0.0097 31 1 1.7081 -4.6155 -0.0014 32 1 3.7526 -7.4378 -1.9604 33 1 2.8719 -5.9680 -2.4636 34 1 3.7046 -6.4834 -4.5780 35 1 5.0402 -7.4749 -3.9096 36 1 4.3591 -4.1381 -5.1269 37 1 4.9213 -5.6099 -7.5850 38 1 6.2383 -4.2295 -2.1624 39 1 6.7385 -5.9455 -2.2452 40 1 5.4035 -2.4819 0.0005 41 1 4.1855 -0.3458 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000645822574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:36 Heat of formation + Delta-G solvation = -147.009098 kcal Electronic energy + Delta-G solvation = -27694.852021 eV Core-core repulsion = 23666.194468 eV Total energy + Delta-G solvation = -4028.657553 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.16757 -39.73921 -39.33765 -38.44954 -37.06877 -36.06416 -34.07325 -33.41452 -32.31053 -30.96072 -30.38059 -29.96783 -26.72698 -25.45726 -23.85406 -23.12030 -21.60110 -21.18752 -20.22698 -19.46479 -18.87723 -18.53661 -17.65996 -17.28130 -16.90668 -16.57870 -16.13837 -16.07623 -15.98748 -15.77278 -15.23818 -15.10732 -14.79772 -14.63308 -14.32041 -14.16845 -13.99310 -13.64182 -13.45186 -13.36520 -13.28331 -13.13982 -13.06579 -13.04168 -12.78008 -12.52794 -12.31051 -12.30456 -12.20649 -12.10331 -11.82615 -11.23546 -10.95618 -10.63805 -10.56989 -10.21643 -10.08849 -9.88688 -8.21681 -6.34993 -1.01534 -0.67153 0.15808 1.04405 1.42555 1.47836 1.56902 1.86555 2.40600 2.42486 2.67481 2.89248 3.02112 3.08287 3.55020 3.74122 3.74642 3.97245 4.09863 4.13556 4.21191 4.34063 4.36523 4.43350 4.60187 4.61769 4.63298 4.73594 4.77009 4.84871 4.91116 4.96947 5.01702 5.20814 5.21506 5.25283 5.41283 5.52960 5.60255 5.60882 5.83285 6.11783 6.34022 6.69664 7.36589 7.51239 8.84491 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013003 B = 0.003694 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.831672 B = 7578.376949 C = 8713.292879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.395 3.605 3 O -0.492 6.492 4 C -0.132 4.132 5 C -0.082 4.082 6 C -0.040 4.040 7 C -0.656 4.656 8 S 2.720 3.280 9 O -0.980 6.980 10 O -0.967 6.967 11 N -1.004 6.004 12 C 0.123 3.877 13 C -0.129 4.129 14 C 0.236 3.764 15 O -0.591 6.591 16 C -0.559 4.559 17 H 0.060 0.940 18 C 0.036 3.964 19 N -0.911 5.911 20 Si 0.957 3.043 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.283 1.283 24 C 0.138 3.862 25 C -0.043 4.043 26 C -0.098 4.098 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.190 0.810 31 H 0.166 0.834 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.380 0.620 37 H 0.271 0.729 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.143 0.857 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.602 4.232 10.968 16.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.276 3.724 3 O -0.370 6.370 4 C -0.133 4.133 5 C -0.100 4.100 6 C -0.059 4.059 7 C -0.744 4.744 8 S 2.814 3.186 9 O -0.970 6.970 10 O -0.958 6.958 11 N -0.843 5.843 12 C -0.001 4.001 13 C -0.169 4.169 14 C 0.195 3.805 15 O -0.401 6.401 16 C -0.597 4.597 17 H 0.078 0.922 18 C -0.165 4.165 19 N -0.551 5.551 20 Si 0.783 3.217 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.209 1.209 24 C 0.013 3.987 25 C -0.063 4.063 26 C -0.117 4.117 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.126 0.874 30 H 0.207 0.793 31 H 0.183 0.817 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.231 0.769 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.160 0.840 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.996 4.475 12.257 17.064 hybrid contribution 0.728 0.296 -1.816 1.979 sum -10.268 4.770 10.441 15.401 Atomic orbital electron populations 1.22322 0.89255 1.07255 1.06380 1.23214 0.93912 0.86144 0.69170 1.90545 1.73345 1.35306 1.37797 1.21219 0.94487 0.96604 1.01018 1.22059 1.02584 0.89708 0.95644 1.21301 0.91247 1.01147 0.92228 1.31226 1.07809 1.19933 1.15400 1.00905 0.72963 0.73692 0.71077 1.93532 1.40735 1.86166 1.76612 1.93532 1.67243 1.58590 1.76437 1.58373 1.31375 1.64766 1.29776 1.21867 0.92433 0.94294 0.91507 1.23006 0.99696 1.00082 0.94068 1.19779 0.88892 0.82353 0.89503 1.86055 1.75188 1.42628 1.36215 1.21830 0.94659 1.50618 0.92601 0.92188 1.25576 0.97983 0.93493 0.99460 1.69631 1.20100 1.50320 1.15031 0.85524 0.79821 0.77633 0.78693 1.19653 1.20419 1.20868 1.22041 0.86818 0.99573 0.90305 1.21007 1.00910 0.91265 0.93101 1.21663 0.94483 0.98589 0.96978 0.86986 0.86906 0.87369 0.79267 0.81695 0.90245 0.91008 0.91266 0.91951 0.76915 0.91988 0.91657 0.90280 0.83960 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.81 10.19 71.24 0.73 -1.09 16 2 C 0.40 7.84 7.23 28.03 0.20 8.04 16 3 O -0.49 -13.61 17.09 -2.92 -0.05 -13.66 16 4 C -0.13 -2.92 5.87 -20.15 -0.12 -3.04 16 5 C -0.08 -1.45 9.45 22.58 0.21 -1.24 16 6 C -0.04 -0.91 9.50 22.23 0.21 -0.70 16 7 C -0.66 -18.77 5.98 22.35 0.13 -18.64 16 8 S 2.72 88.39 5.93 -56.49 -0.34 88.06 16 9 O -0.98 -36.33 16.85 -128.00 -2.16 -38.48 16 10 O -0.97 -32.37 16.84 -128.00 -2.16 -34.52 16 11 N -1.00 -35.52 3.70 -506.38 -1.87 -37.39 16 12 C 0.12 4.19 6.99 86.74 0.61 4.80 16 13 C -0.13 -5.28 5.64 31.79 0.18 -5.10 16 14 C 0.24 10.81 0.89 -10.15 -0.01 10.80 16 15 O -0.59 -28.60 13.18 -148.98 -1.96 -30.56 16 16 C -0.56 -28.06 8.25 25.60 0.21 -27.85 16 17 H 0.06 3.01 7.77 -2.91 -0.02 2.99 16 18 C 0.04 1.76 5.30 84.65 0.45 2.21 16 19 N -0.91 -45.47 10.79 21.44 0.23 -45.24 16 20 Si 0.96 40.22 29.54 68.60 2.03 42.24 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 22 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 24 C 0.14 5.59 6.15 86.86 0.53 6.12 16 25 C -0.04 -1.26 9.50 22.23 0.21 -1.05 16 26 C -0.10 -2.61 9.60 22.58 0.22 -2.40 16 27 H 0.11 0.43 5.61 -2.39 -0.01 0.42 16 28 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.19 1.46 5.93 -2.91 -0.02 1.44 16 31 H 0.17 3.04 7.60 -2.91 -0.02 3.02 16 32 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 34 H 0.07 2.98 7.85 -2.38 -0.02 2.96 16 35 H 0.06 2.58 8.03 -2.39 -0.02 2.56 16 36 H 0.38 19.00 6.93 -74.06 -0.51 18.48 16 37 H 0.27 12.89 8.31 -92.70 -0.77 12.12 16 38 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 39 H 0.08 3.12 8.02 -2.39 -0.02 3.10 16 40 H 0.14 4.03 7.60 -2.91 -0.02 4.01 16 41 H 0.14 3.61 7.65 -2.91 -0.02 3.59 16 Total: -1.00 -65.89 357.78 -1.95 -67.84 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.56 Total: 30.85 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 3.77 Total: -29.13 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -1.64 Total: -82.63 kcal Atomic # 8 Polarization: -110.90 SS G_CDS: -6.33 Total: -117.22 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.24 kcal Atomic # 16 Polarization: 88.39 SS G_CDS: -0.34 Total: 88.06 kcal Total: -65.89 -1.95 -67.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000645822574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.172 kcal (2) G-P(sol) polarization free energy of solvation -65.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds