Wall clock time and date at job start Tue Mar 31 2020 22:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35998 * 116.99645 * 2 1 4 4 C 1.38719 * 119.97524 * 180.02562 * 3 2 1 5 5 C 1.38082 * 120.02871 * 180.27826 * 4 3 2 6 6 C 1.38923 * 119.97359 * 359.44609 * 5 4 3 7 7 S 1.76200 * 120.02707 * 180.30170 * 6 5 4 8 8 C 1.81395 * 103.00141 * 95.44626 * 7 6 5 9 9 H 1.09005 * 109.47158 * 52.60159 * 8 7 6 10 10 C 1.53005 * 109.47054 * 292.60384 * 8 7 6 11 11 C 1.50701 * 109.47440 * 172.60429 * 8 7 6 12 12 O 1.20823 * 119.99853 * 24.99565 * 11 8 7 13 13 O 1.34234 * 119.99891 * 205.00382 * 11 8 7 14 14 C 1.45203 * 116.99575 * 179.97438 * 13 11 8 15 15 C 1.50696 * 109.46985 * 179.97438 * 14 13 11 16 16 O 1.21297 * 119.99667 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00449 * 179.97438 * 15 14 13 18 18 C 1.37088 * 120.00256 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00163 * 359.97438 * 18 17 15 20 20 C 1.38953 * 120.00085 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99579 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00280 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47011 * 90.00145 * 22 20 18 24 24 H 1.48497 * 109.47346 * 210.00089 * 22 20 18 25 25 H 1.48499 * 109.47164 * 330.00316 * 22 20 18 26 26 C 1.38917 * 119.95007 * 0.53292 * 6 5 4 27 27 C 1.38093 * 119.97567 * 359.74549 * 26 6 5 28 28 H 1.09005 * 109.47179 * 299.99598 * 1 2 3 29 29 H 1.09000 * 109.47523 * 59.99966 * 1 2 3 30 30 H 1.08997 * 109.47338 * 180.02562 * 1 2 3 31 31 H 1.08009 * 119.98401 * 0.02562 * 4 3 2 32 32 H 1.08001 * 120.01606 * 179.70028 * 5 4 3 33 33 H 1.09003 * 109.47100 * 65.92094 * 10 8 7 34 34 H 1.09003 * 109.46980 * 185.92178 * 10 8 7 35 35 H 1.08996 * 109.47057 * 305.91944 * 10 8 7 36 36 H 1.08999 * 109.46898 * 299.99776 * 14 13 11 37 37 H 1.09006 * 109.47074 * 59.99801 * 14 13 11 38 38 H 0.96999 * 119.99171 * 0.02562 * 17 15 14 39 39 H 0.97005 * 119.99537 * 179.97438 * 21 20 18 40 40 H 1.08002 * 120.01660 * 179.76737 * 26 6 5 41 41 H 1.07996 * 119.99047 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4317 1.2839 -0.0005 5 6 4.0596 2.5136 0.0053 6 6 3.3035 3.6791 0.0000 7 16 4.1034 5.2490 -0.0006 8 6 4.1454 5.6849 -1.7609 9 1 3.1419 5.6052 -2.1790 10 6 5.0836 4.7291 -2.5007 11 6 4.6437 7.0986 -1.9167 12 8 5.3463 7.5888 -1.0647 13 8 4.3068 7.8132 -3.0019 14 6 4.8223 9.1681 -3.0851 15 6 4.3440 9.8101 -4.3618 16 8 3.6377 9.1871 -5.1262 17 7 4.7002 11.0767 -4.6538 18 6 4.2646 11.6608 -5.8150 19 1 3.6363 11.1059 -6.4961 20 6 4.6322 12.9665 -6.1164 21 7 5.3971 13.6415 -5.2879 22 14 4.0393 13.7623 -7.6990 23 1 2.7445 14.4469 -7.4539 24 1 5.0437 14.7537 -8.1611 25 1 3.8583 12.7189 -8.7400 26 6 1.9163 3.6058 0.0001 27 6 1.2904 2.3748 0.0001 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 4.0193 0.3777 -0.0014 32 1 5.1382 2.5695 0.0097 33 1 4.6680 3.7217 -2.4776 34 1 5.1911 5.0541 -3.5356 35 1 6.0599 4.7307 -2.0161 36 1 4.4659 9.7454 -2.2320 37 1 5.9121 9.1433 -3.0773 38 1 5.2647 11.5749 -4.0423 39 1 5.6540 14.5529 -5.4984 40 1 1.3274 4.5111 -0.0002 41 1 0.2120 2.3176 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731242663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:49 Heat of formation + Delta-G solvation = -128.565556 kcal Electronic energy + Delta-G solvation = -25273.500033 eV Core-core repulsion = 21245.642252 eV Total energy + Delta-G solvation = -4027.857781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.52560 -40.39605 -38.17264 -37.80439 -36.18392 -34.01897 -33.50099 -31.63769 -31.39012 -30.56123 -28.46329 -27.80537 -25.31029 -24.34184 -23.18635 -22.70734 -20.99857 -19.60525 -18.78645 -18.10459 -18.01752 -17.40000 -16.65207 -16.50921 -16.25329 -16.19334 -15.51807 -15.25373 -14.86801 -14.58784 -14.35599 -14.23605 -13.98638 -13.94622 -13.50057 -13.36284 -13.09129 -12.82699 -12.48963 -12.37182 -12.13486 -11.94588 -11.85876 -11.66425 -11.61978 -11.35524 -11.14242 -10.46751 -10.45275 -10.44427 -10.31280 -10.28457 -9.61729 -9.48309 -8.67760 -8.53707 -8.09472 -7.95705 -6.50901 -3.93004 0.48313 0.89192 1.33988 2.15784 2.34144 2.71852 2.75925 3.12565 3.22926 3.27217 3.28974 3.72200 4.09099 4.29296 4.40298 4.50290 4.58293 4.60649 4.65362 4.83026 4.87017 4.94498 4.99570 5.03799 5.11994 5.14008 5.34719 5.47643 5.52545 5.53178 5.57727 5.67528 5.81781 5.84651 5.94189 6.03328 6.18592 6.53805 6.83159 7.46862 7.75175 7.93720 8.47222 9.05947 9.38017 9.87837 10.66216 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.024852 B = 0.001824 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.376983 B =15350.191729 C =15998.156300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.153 3.847 4 C -0.162 4.162 5 C -0.025 4.025 6 C -0.170 4.170 7 S -0.074 6.074 8 C -0.082 4.082 9 H 0.121 0.879 10 C -0.142 4.142 11 C 0.480 3.520 12 O -0.494 6.494 13 O -0.319 6.319 14 C 0.061 3.939 15 C 0.438 3.562 16 O -0.577 6.577 17 N -0.551 5.551 18 C -0.303 4.303 19 H 0.106 0.894 20 C 0.025 3.975 21 N -0.896 5.896 22 Si 0.934 3.066 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.268 1.268 26 C -0.028 4.028 27 C -0.217 4.217 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.395 0.605 39 H 0.274 0.726 40 H 0.136 0.864 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.474 -24.528 12.801 28.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C 0.107 3.893 4 C -0.182 4.182 5 C -0.046 4.046 6 C -0.281 4.281 7 S 0.160 5.840 8 C -0.210 4.210 9 H 0.139 0.861 10 C -0.201 4.201 11 C 0.320 3.680 12 O -0.382 6.382 13 O -0.234 6.234 14 C -0.017 4.017 15 C 0.223 3.777 16 O -0.461 6.461 17 N -0.189 5.189 18 C -0.432 4.432 19 H 0.124 0.876 20 C -0.177 4.177 21 N -0.537 5.537 22 Si 0.761 3.239 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.193 1.193 26 C -0.048 4.048 27 C -0.238 4.238 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.229 0.771 39 H 0.084 0.916 40 H 0.154 0.846 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.169 -24.104 13.368 28.043 hybrid contribution -0.684 0.297 -1.292 1.492 sum -5.853 -23.806 12.076 27.328 Atomic orbital electron populations 1.23131 0.77904 1.04288 1.01715 1.86116 1.21839 1.26839 1.88052 1.19221 0.92492 0.84233 0.93368 1.20502 0.91382 0.98747 1.07602 1.21449 1.00301 0.90233 0.92613 1.21719 0.95939 0.97602 1.12877 1.86077 1.76305 1.17067 1.04586 1.23136 1.05556 0.92797 0.99544 0.86079 1.22027 0.99041 0.97907 1.01131 1.22558 0.78131 0.87373 0.79935 1.90690 1.34840 1.71010 1.41649 1.86538 1.68320 1.26932 1.41582 1.22812 0.99702 0.79423 0.99756 1.19292 0.86908 0.83745 0.87781 1.90563 1.41156 1.63192 1.51155 1.41695 1.45344 1.10484 1.21345 1.19725 1.29468 0.96304 0.97714 0.87608 1.25320 0.96542 0.96389 0.99499 1.69619 1.35315 1.11909 1.36813 0.85791 0.78282 0.78829 0.81000 1.20260 1.20796 1.19292 1.21483 0.93406 0.97628 0.92328 1.21306 1.00421 0.92078 1.09983 0.92350 0.92279 0.87965 0.84544 0.84093 0.90752 0.90261 0.90455 0.89328 0.89363 0.77122 0.91607 0.84597 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.32 -2.48 10.50 -19.73 -0.21 -2.69 16 3 C 0.15 1.29 6.69 -39.23 -0.26 1.03 16 4 C -0.16 -1.31 9.98 -39.46 -0.39 -1.70 16 5 C -0.03 -0.22 9.47 -39.38 -0.37 -0.59 16 6 C -0.17 -1.66 5.31 -39.08 -0.21 -1.87 16 7 S -0.07 -0.88 20.39 -107.50 -2.19 -3.07 16 8 C -0.08 -1.02 3.24 -27.88 -0.09 -1.11 16 9 H 0.12 1.39 8.14 -51.92 -0.42 0.97 16 10 C -0.14 -1.47 9.04 37.16 0.34 -1.13 16 11 C 0.48 7.75 7.08 36.01 0.25 8.00 16 12 O -0.49 -8.85 15.89 -18.75 -0.30 -9.15 16 13 O -0.32 -5.98 9.76 -45.91 -0.45 -6.42 16 14 C 0.06 1.16 5.94 36.00 0.21 1.38 16 15 C 0.44 10.56 7.86 -10.99 -0.09 10.48 16 16 O -0.58 -16.01 16.08 -14.12 -0.23 -16.23 16 17 N -0.55 -13.93 5.29 -10.97 -0.06 -13.99 16 18 C -0.30 -8.34 9.68 -14.94 -0.14 -8.49 16 19 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 20 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 21 N -0.90 -23.98 13.05 55.50 0.72 -23.25 16 22 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 C -0.03 -0.25 9.79 -39.38 -0.39 -0.63 16 27 C -0.22 -1.71 9.03 -39.46 -0.36 -2.07 16 28 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 29 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 30 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.07 0.64 7.58 -51.93 -0.39 0.25 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.55 8.13 -51.93 -0.42 1.13 16 37 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 38 H 0.40 9.46 7.90 -40.82 -0.32 9.14 16 39 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.13 0.76 6.29 -52.49 -0.33 0.43 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -33.42 375.80 -7.82 -41.24 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.16 Total: 7.32 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -0.60 Total: 4.95 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.67 Total: -37.24 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -1.18 Total: -34.49 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.19 Total: -3.07 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.42 -7.82 -41.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.324 kcal (2) G-P(sol) polarization free energy of solvation -33.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds