Wall clock time and date at job start Tue Mar 31 2020 22:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47193 * 2 1 4 4 C 1.50695 * 109.46953 * 239.99982 * 2 1 3 5 5 H 1.08001 * 120.00026 * 240.00099 * 4 2 1 6 6 C 1.37879 * 120.00340 * 60.00014 * 4 2 1 7 7 N 1.31517 * 119.99564 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00360 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.46948 * 60.00085 * 8 6 4 10 10 H 1.48505 * 109.46884 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47044 * 300.00235 * 8 6 4 12 12 S 1.81400 * 109.47063 * 120.00126 * 2 1 3 13 13 C 1.76201 * 102.99967 * 288.84412 * 12 2 1 14 14 C 1.38773 * 120.10476 * 359.03841 * 13 12 2 15 15 C 1.38206 * 119.98738 * 180.27849 * 14 13 12 16 16 C 1.38294 * 120.20237 * 359.71921 * 15 14 13 17 17 C 1.38262 * 120.20405 * 0.02562 * 16 15 14 18 18 C 1.38643 * 120.00866 * 0.02562 * 17 16 15 19 19 N 1.40143 * 120.09634 * 179.97438 * 18 17 16 20 20 C 1.34773 * 120.00105 * 47.29320 * 19 18 17 21 21 S 1.71199 * 119.99922 * 355.37544 * 20 19 18 22 22 N 1.34770 * 120.00002 * 175.38027 * 20 19 18 23 23 C 1.46505 * 120.00016 * 180.02562 * 22 20 19 24 24 C 1.50701 * 109.47193 * 179.72455 * 23 22 20 25 25 N 1.34784 * 119.99900 * 179.97438 * 24 23 22 26 26 O 1.21279 * 120.00052 * 359.97438 * 24 23 22 27 27 H 1.09002 * 109.47084 * 183.67028 * 1 2 3 28 28 H 1.09004 * 109.46882 * 303.67045 * 1 2 3 29 29 H 1.09000 * 109.46665 * 63.67069 * 1 2 3 30 30 H 0.97000 * 119.99966 * 179.97438 * 7 6 4 31 31 H 1.07994 * 120.00249 * 0.02562 * 14 13 12 32 32 H 1.08000 * 119.89682 * 179.74676 * 15 14 13 33 33 H 1.07999 * 119.89730 * 180.02562 * 16 15 14 34 34 H 1.07999 * 119.99305 * 179.97438 * 17 16 15 35 35 H 0.97000 * 120.00020 * 227.29032 * 19 18 17 36 36 H 0.97003 * 120.00290 * 359.72185 * 22 20 19 37 37 H 1.09003 * 109.47162 * 299.72158 * 23 22 20 38 38 H 1.08998 * 109.47484 * 59.71896 * 23 22 20 39 39 H 0.96994 * 119.99562 * 359.97438 * 25 24 23 40 40 H 0.96998 * 119.99490 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 1.8280 -2.5198 -4.0081 10 1 1.8278 -0.4192 -5.2205 11 1 3.8075 -1.1190 -4.0077 12 16 2.1347 -0.8552 1.4811 13 6 1.7440 0.2727 2.7772 14 6 1.1356 1.4852 2.4850 15 6 0.8354 2.3705 3.5029 16 6 1.1343 2.0498 4.8146 17 6 1.7357 0.8417 5.1155 18 6 2.0415 -0.0523 4.1010 19 7 2.6516 -1.2771 4.4039 20 6 2.1707 -2.0400 5.4054 21 16 0.8907 -1.4610 6.3838 22 7 2.6975 -3.2587 5.6368 23 6 2.1744 -4.0883 6.7252 24 6 2.9247 -5.3946 6.7663 25 7 2.6130 -6.3219 7.6935 26 8 3.8089 -5.6116 5.9651 27 1 -0.3633 -1.0256 0.0658 28 1 -0.3633 0.5698 0.8553 29 1 -0.3633 0.4558 -0.9211 30 1 0.7095 1.1618 -3.4844 31 1 0.9004 1.7386 1.4619 32 1 0.3656 3.3155 3.2734 33 1 0.8972 2.7451 5.6062 34 1 1.9680 0.5949 6.1409 35 1 3.4200 -1.5758 3.8927 36 1 3.4201 -3.5885 5.0799 37 1 2.3018 -3.5662 7.6735 38 1 1.1152 -4.2828 6.5570 39 1 1.9060 -6.1481 8.3345 40 1 3.0962 -7.1625 7.7202 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731322428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:55 Heat of formation + Delta-G solvation = -13.477186 kcal Electronic energy + Delta-G solvation = -23800.815878 eV Core-core repulsion = 20252.994326 eV Total energy + Delta-G solvation = -3547.821553 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.30773 -40.65945 -38.88860 -36.39616 -35.94205 -34.84121 -32.84021 -31.64371 -31.00314 -28.72606 -27.41584 -25.31355 -23.90601 -23.48983 -23.04633 -22.00018 -19.98789 -19.76433 -18.70918 -18.19161 -17.80151 -17.59359 -17.02636 -16.95539 -16.79014 -16.28343 -16.09582 -15.79529 -15.31844 -15.07519 -14.92066 -14.51725 -14.42421 -14.13699 -13.77054 -13.33364 -13.21635 -12.89190 -12.88179 -12.61454 -12.46997 -12.37960 -12.20941 -11.77095 -11.41852 -11.39877 -10.99092 -10.82724 -10.75799 -10.61172 -10.48164 -9.66800 -9.05996 -8.34587 -8.26549 -8.23060 -6.43687 -0.10076 0.39477 0.51934 0.75289 0.84731 1.33062 1.38031 1.40884 1.41302 1.49919 1.81988 2.25330 2.36114 2.53987 2.81464 3.03031 3.75371 3.95728 4.20500 4.22834 4.24729 4.35287 4.51445 4.56096 4.57757 4.78873 4.81997 4.85792 4.96965 5.17535 5.29309 5.40042 5.44464 5.55029 5.62064 5.71769 5.73394 5.76305 5.99904 6.06613 6.13876 6.28568 6.58323 7.14763 7.24038 8.78664 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.011506 B = 0.003254 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.824673 B = 8603.415699 C =10646.319975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.101 3.899 3 H 0.029 0.971 4 C -0.536 4.536 5 H 0.058 0.942 6 C 0.029 3.971 7 N -0.907 5.907 8 Si 0.966 3.034 9 H -0.271 1.271 10 H -0.277 1.277 11 H -0.270 1.270 12 S -0.176 6.176 13 C -0.084 4.084 14 C -0.152 4.152 15 C -0.090 4.090 16 C -0.123 4.123 17 C -0.053 4.053 18 C 0.119 3.881 19 N -0.614 5.614 20 C 0.578 3.422 21 S -0.674 6.674 22 N -0.660 5.660 23 C 0.106 3.894 24 C 0.517 3.483 25 N -0.821 5.821 26 O -0.587 6.587 27 H 0.031 0.969 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.270 0.730 31 H 0.119 0.881 32 H 0.149 0.851 33 H 0.159 0.841 34 H 0.150 0.850 35 H 0.415 0.585 36 H 0.415 0.585 37 H 0.137 0.863 38 H 0.127 0.873 39 H 0.424 0.576 40 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.504 -7.061 21.458 22.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.027 4.027 3 H 0.047 0.953 4 C -0.575 4.575 5 H 0.076 0.924 6 C -0.173 4.173 7 N -0.545 5.545 8 Si 0.790 3.210 9 H -0.196 1.196 10 H -0.202 1.202 11 H -0.195 1.195 12 S 0.071 5.929 13 C -0.200 4.200 14 C -0.177 4.177 15 C -0.110 4.110 16 C -0.145 4.145 17 C -0.076 4.076 18 C 0.019 3.981 19 N -0.238 5.238 20 C 0.216 3.784 21 S -0.547 6.547 22 N -0.291 5.291 23 C -0.021 4.021 24 C 0.301 3.699 25 N -0.386 5.386 26 O -0.467 6.467 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.137 0.863 32 H 0.167 0.833 33 H 0.176 0.824 34 H 0.168 0.832 35 H 0.255 0.745 36 H 0.256 0.744 37 H 0.154 0.846 38 H 0.145 0.855 39 H 0.256 0.744 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 2.599 -7.801 21.451 22.973 hybrid contribution 0.733 -0.072 -1.980 2.112 sum 3.332 -7.873 19.472 21.266 Atomic orbital electron populations 1.21980 0.95966 0.99653 1.01440 1.20804 0.95858 0.96171 0.89860 0.95315 1.20860 1.33107 1.13440 0.90115 0.92396 1.25646 0.94644 0.95543 1.01464 1.69948 1.36210 1.23298 1.24996 0.85488 0.78881 0.78643 0.77985 1.19647 1.20184 1.19482 1.84851 1.76431 1.30244 1.01338 1.21854 1.03246 0.99406 0.95474 1.21289 1.01789 0.93885 1.00728 1.21405 0.97922 0.99319 0.92351 1.21293 0.99942 0.96576 0.96732 1.21391 0.96024 0.91312 0.98866 1.16853 1.04123 0.85710 0.91391 1.42043 1.31657 1.18427 1.31723 1.21913 0.88095 0.82937 0.85493 1.93384 1.29107 1.80884 1.51320 1.44523 1.37307 1.12834 1.34428 1.21585 1.00073 0.88495 0.91951 1.20498 0.82544 0.86213 0.80665 1.43494 1.41221 1.19642 1.34254 1.90786 1.33950 1.80210 1.41772 0.95002 0.94289 0.90608 0.92108 0.86315 0.83302 0.82384 0.83212 0.74481 0.74440 0.84556 0.85515 0.74374 0.75217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.33 8.59 71.98 0.62 -5.71 16 2 C 0.10 5.03 1.98 29.85 0.06 5.09 16 3 H 0.03 1.55 7.01 -2.39 -0.02 1.53 16 4 C -0.54 -29.05 8.58 25.60 0.22 -28.83 16 5 H 0.06 3.15 7.71 -2.91 -0.02 3.13 16 6 C 0.03 1.56 5.30 84.65 0.45 2.01 16 7 N -0.91 -49.72 11.30 21.45 0.24 -49.48 16 8 Si 0.97 42.23 29.54 68.60 2.03 44.26 16 9 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 10 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 12 S -0.18 -7.45 20.37 -56.49 -1.15 -8.60 16 13 C -0.08 -3.15 6.10 22.71 0.14 -3.01 16 14 C -0.15 -5.52 8.15 22.39 0.18 -5.34 16 15 C -0.09 -2.57 10.04 22.28 0.22 -2.34 16 16 C -0.12 -3.18 10.04 22.29 0.22 -2.96 16 17 C -0.05 -1.52 7.88 22.37 0.18 -1.35 16 18 C 0.12 3.83 5.89 38.22 0.23 4.05 16 19 N -0.61 -16.94 4.80 -189.49 -0.91 -17.85 16 20 C 0.58 14.88 7.85 179.06 1.41 16.28 16 21 S -0.67 -20.54 24.99 -56.49 -1.41 -21.95 16 22 N -0.66 -12.92 5.53 -353.90 -1.96 -14.88 16 23 C 0.11 1.44 5.61 85.63 0.48 1.92 16 24 C 0.52 7.05 8.17 87.66 0.72 7.76 16 25 N -0.82 -4.03 8.87 -173.52 -1.54 -5.57 16 26 O -0.59 -13.42 16.50 -3.03 -0.05 -13.47 16 27 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.04 1.71 5.79 -2.39 -0.01 1.70 16 29 H 0.08 3.98 5.98 -2.39 -0.01 3.96 16 30 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 31 H 0.12 4.79 4.61 -2.91 -0.01 4.78 16 32 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 33 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 34 H 0.15 4.16 6.29 -4.96 -0.03 4.12 16 35 H 0.42 10.42 8.44 -92.71 -0.78 9.64 16 36 H 0.41 8.02 7.46 -92.71 -0.69 7.33 16 37 H 0.14 1.47 8.00 -2.39 -0.02 1.45 16 38 H 0.13 1.67 7.98 -2.39 -0.02 1.65 16 39 H 0.42 -0.58 8.83 -92.71 -0.82 -1.40 16 40 H 0.42 1.51 8.93 -92.71 -0.83 0.68 16 Total: -1.00 -71.55 356.98 -1.62 -73.17 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: -1.99 Total: 26.81 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 5.12 Total: -12.43 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -4.16 Total: -87.79 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.05 Total: -13.47 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: -27.99 SS G_CDS: -2.56 Total: -30.55 kcal Total: -71.55 -1.62 -73.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731322428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.693 kcal (2) G-P(sol) polarization free energy of solvation -71.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds