Wall clock time and date at job start Tue Mar 31 2020 22:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.36003 * 116.99921 * 2 1 4 4 C 1.38716 * 119.97306 * 179.97438 * 3 2 1 5 5 C 1.38085 * 120.02015 * 180.27910 * 4 3 2 6 6 C 1.38925 * 119.97831 * 359.49526 * 5 4 3 7 7 S 1.76197 * 120.02463 * 180.27758 * 6 5 4 8 8 C 1.81398 * 103.00353 * 353.91531 * 7 6 5 9 9 H 1.09004 * 109.47208 * 51.76246 * 8 7 6 10 10 C 1.53000 * 109.47226 * 171.76393 * 8 7 6 11 11 C 1.50707 * 109.46977 * 291.76633 * 8 7 6 12 12 O 1.21290 * 119.99865 * 341.93953 * 11 8 7 13 13 N 1.34771 * 120.00025 * 161.94247 * 11 8 7 14 14 C 1.37098 * 120.00303 * 128.19548 * 13 11 8 15 15 H 1.07999 * 120.00725 * 158.41884 * 14 13 11 16 16 C 1.38957 * 119.99725 * 338.41932 * 14 13 11 17 17 N 1.31413 * 119.99874 * 352.68451 * 16 14 13 18 18 Si 1.86798 * 119.99981 * 172.68152 * 16 14 13 19 19 H 1.48505 * 109.47104 * 90.00230 * 18 16 14 20 20 H 1.48497 * 109.47233 * 210.00251 * 18 16 14 21 21 H 1.48507 * 109.47276 * 330.00355 * 18 16 14 22 22 C 1.46504 * 120.00182 * 308.19462 * 13 11 8 23 23 C 1.50701 * 109.46789 * 93.76912 * 22 13 11 24 24 O 1.20826 * 120.00260 * 0.02562 * 23 22 13 25 25 O 1.34240 * 119.99610 * 180.02562 * 23 22 13 26 26 C 1.38917 * 119.94984 * 0.50357 * 6 5 4 27 27 C 1.38095 * 119.97426 * 359.75409 * 26 6 5 28 28 H 1.09004 * 109.46980 * 59.99583 * 1 2 3 29 29 H 1.08999 * 109.46934 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46840 * 299.99833 * 1 2 3 31 31 H 1.07998 * 119.98913 * 0.02562 * 4 3 2 32 32 H 1.08006 * 120.00946 * 179.72642 * 5 4 3 33 33 H 1.09005 * 109.46691 * 173.85843 * 10 8 7 34 34 H 1.08995 * 109.46766 * 293.85367 * 10 8 7 35 35 H 1.08995 * 109.47042 * 53.86306 * 10 8 7 36 36 H 0.97000 * 119.99702 * 185.00598 * 17 16 14 37 37 H 1.08995 * 109.47563 * 213.76881 * 22 13 11 38 38 H 1.08996 * 109.46600 * 333.77288 * 22 13 11 39 39 H 0.96697 * 116.99826 * 180.02562 * 25 23 22 40 40 H 1.08000 * 120.01369 * 179.72727 * 26 6 5 41 41 H 1.08000 * 119.98695 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4318 1.2838 0.0005 5 6 4.0597 2.5136 0.0064 6 6 3.3036 3.6791 0.0011 7 16 4.1035 5.2490 0.0011 8 6 5.8540 4.8151 0.1962 9 1 6.1294 4.0710 -0.5512 10 6 6.7136 6.0671 0.0102 11 6 6.0809 4.2501 1.5748 12 8 5.2648 4.4431 2.4511 13 7 7.1906 3.5305 1.8340 14 6 7.9822 3.8533 2.9057 15 1 8.6472 3.1145 3.3280 16 6 7.9290 5.1313 3.4488 17 7 7.2312 6.0707 2.8510 18 14 8.8494 5.5138 5.0287 19 1 10.2214 5.9789 4.7021 20 1 8.1307 6.5775 5.7751 21 1 8.9278 4.2890 5.8648 22 6 7.5509 2.4032 0.9704 23 6 8.5075 2.8727 -0.0953 24 8 8.8531 4.0299 -0.1297 25 8 8.9755 2.0050 -1.0064 26 6 1.9163 3.6058 0.0005 27 6 1.2905 2.3748 0.0001 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0194 0.3776 0.0005 32 1 5.1383 2.5694 0.0112 33 1 7.7537 5.8302 0.2343 34 1 6.6336 6.4128 -1.0203 35 1 6.3659 6.8498 0.6843 36 1 7.2523 6.9797 3.1888 37 1 8.0260 1.6252 1.5678 38 1 6.6521 2.0032 0.5013 39 1 9.5869 2.3526 -1.6701 40 1 1.3275 4.5112 0.0009 41 1 0.2120 2.3176 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738069607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:55 Heat of formation + Delta-G solvation = -100.272541 kcal Electronic energy + Delta-G solvation = -28257.632694 eV Core-core repulsion = 24231.001790 eV Total energy + Delta-G solvation = -4026.630904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.94504 -39.75140 -38.33356 -37.16506 -35.54093 -34.26254 -32.28865 -31.73189 -30.93841 -30.03884 -27.65848 -27.29927 -25.04879 -23.69453 -22.32576 -22.07997 -21.26503 -19.40177 -18.22867 -17.55636 -17.11759 -16.81204 -16.17942 -16.06042 -15.71706 -15.53658 -15.37422 -14.73674 -14.66896 -14.42645 -13.78825 -13.73822 -13.66228 -13.34798 -12.80307 -12.77111 -12.39870 -12.17209 -11.95498 -11.73347 -11.37631 -11.32406 -11.23333 -11.03406 -10.92949 -10.84914 -10.76182 -10.54280 -10.45113 -10.27132 -9.95678 -9.59966 -9.20163 -8.89971 -8.77285 -8.39725 -7.51657 -6.68459 -6.22310 -3.77373 1.45430 1.51020 2.09661 2.83739 2.94303 3.23960 3.29444 3.31332 3.34087 3.49730 3.85824 3.88762 4.22451 4.74072 4.83415 4.91473 5.05137 5.07732 5.23369 5.25966 5.34685 5.52100 5.56674 5.59884 5.62510 5.80309 5.88202 5.96204 6.11439 6.15649 6.21686 6.42028 6.51547 6.52966 6.77877 6.81286 6.98597 7.40039 7.44767 7.47183 7.95899 8.52455 8.87275 9.11963 9.40904 9.89197 10.88234 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012753 B = 0.004220 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.036543 B = 6634.256536 C = 7105.354717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.108 3.892 4 C -0.126 4.126 5 C -0.096 4.096 6 C -0.098 4.098 7 S -0.088 6.088 8 C -0.083 4.083 9 H 0.074 0.926 10 C -0.104 4.104 11 C 0.558 3.442 12 O -0.487 6.487 13 N -0.496 5.496 14 C -0.305 4.305 15 H 0.086 0.914 16 C 0.035 3.965 17 N -0.857 5.857 18 Si 0.929 3.071 19 H -0.282 1.282 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.127 3.873 23 C 0.433 3.567 24 O -0.482 6.482 25 O -0.534 6.534 26 C -0.068 4.068 27 C -0.188 4.188 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.132 0.868 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.270 0.730 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.394 0.606 40 H 0.128 0.872 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.055 -8.364 -9.128 14.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.060 3.940 4 C -0.146 4.146 5 C -0.120 4.120 6 C -0.211 4.211 7 S 0.158 5.842 8 C -0.216 4.216 9 H 0.093 0.907 10 C -0.162 4.162 11 C 0.344 3.656 12 O -0.358 6.358 13 N -0.223 5.223 14 C -0.431 4.431 15 H 0.104 0.896 16 C -0.171 4.171 17 N -0.496 5.496 18 Si 0.757 3.243 19 H -0.208 1.208 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.001 4.001 23 C 0.271 3.729 24 O -0.367 6.367 25 O -0.346 6.346 26 C -0.092 4.092 27 C -0.208 4.208 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.150 0.850 32 H 0.142 0.858 33 H 0.122 0.878 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.126 0.874 38 H 0.107 0.893 39 H 0.251 0.749 40 H 0.146 0.854 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.118 -6.829 -8.354 13.503 hybrid contribution 1.478 -0.526 0.253 1.589 sum -6.641 -7.355 -8.101 12.799 Atomic orbital electron populations 1.23001 0.78878 1.03549 1.01247 1.86068 1.20984 1.27044 1.89253 1.18884 0.92191 0.83964 0.98930 1.20249 0.91406 0.98013 1.04981 1.21058 0.99497 0.91191 1.00263 1.21757 0.96691 0.97542 1.05100 1.85061 1.03779 1.06388 1.88947 1.24017 0.93685 1.03154 1.00769 0.90744 1.21451 1.01393 0.94284 0.99104 1.18853 0.80858 0.78495 0.87441 1.90499 1.41974 1.55778 1.47533 1.42790 1.22911 1.31469 1.25138 1.19249 1.20549 0.96634 1.06704 0.89602 1.25119 0.97310 0.95202 0.99428 1.69493 1.39323 1.01815 1.38944 0.85893 0.78509 0.78273 0.81624 1.20835 1.20981 1.19791 1.21358 0.95580 0.93463 0.89703 1.25764 0.81023 0.84765 0.81310 1.90675 1.55456 1.19304 1.71252 1.84655 1.61318 1.46421 1.42203 1.20499 0.92238 0.97289 0.99169 1.21070 0.99613 0.91957 1.08186 0.92861 0.88547 0.92751 0.85027 0.85808 0.87777 0.94565 0.90576 0.91895 0.87374 0.89345 0.74867 0.85413 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.18 10.50 -19.75 -0.21 -4.39 16 3 C 0.11 1.59 6.69 -39.23 -0.26 1.33 16 4 C -0.13 -1.98 9.98 -39.46 -0.39 -2.37 16 5 C -0.10 -1.70 8.81 -39.38 -0.35 -2.04 16 6 C -0.10 -1.80 6.03 -39.08 -0.24 -2.03 16 7 S -0.09 -1.76 20.55 -107.50 -2.21 -3.97 16 8 C -0.08 -1.79 1.78 -27.88 -0.05 -1.84 16 9 H 0.07 1.48 5.76 -51.92 -0.30 1.18 16 10 C -0.10 -2.27 7.83 37.16 0.29 -1.98 16 11 C 0.56 13.71 2.49 -10.98 -0.03 13.68 16 12 O -0.49 -13.81 15.41 5.55 0.09 -13.73 16 13 N -0.50 -11.77 2.11 -116.09 -0.24 -12.02 16 14 C -0.30 -7.90 9.51 -14.93 -0.14 -8.04 16 15 H 0.09 2.11 7.84 -52.49 -0.41 1.69 16 16 C 0.04 0.93 5.13 -17.46 -0.09 0.84 16 17 N -0.86 -23.66 8.61 55.50 0.48 -23.18 16 18 Si 0.93 21.24 29.56 -169.99 -5.03 16.22 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 C 0.13 2.35 5.64 -5.19 -0.03 2.32 16 23 C 0.43 7.74 7.54 36.01 0.27 8.01 16 24 O -0.48 -10.29 14.23 -18.75 -0.27 -10.56 16 25 O -0.53 -7.32 13.42 -39.28 -0.53 -7.84 16 26 C -0.07 -1.07 9.79 -39.38 -0.39 -1.46 16 27 C -0.19 -2.62 9.03 -39.46 -0.36 -2.98 16 28 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 31 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.12 2.21 2.55 -52.48 -0.13 2.08 16 33 H 0.10 2.53 5.73 -51.93 -0.30 2.23 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.80 7.37 -51.93 -0.38 1.42 16 36 H 0.27 7.26 8.32 -40.82 -0.34 6.92 16 37 H 0.11 1.77 8.07 -51.93 -0.42 1.35 16 38 H 0.09 1.44 5.45 -51.93 -0.28 1.16 16 39 H 0.39 3.80 9.10 45.56 0.41 4.21 16 40 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.13 1.38 6.29 -52.49 -0.33 1.05 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -33.70 349.96 -7.17 -40.87 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -3.76 Total: 8.65 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -0.76 Total: 4.68 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.23 Total: -35.20 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.92 Total: -36.52 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.22 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.21 Total: -3.97 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.70 -7.17 -40.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738069607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.400 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds