Wall clock time and date at job start Tue Mar 31 2020 22:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.36003 * 116.99921 * 2 1 4 4 C 1.38716 * 119.97306 * 179.97438 * 3 2 1 5 5 C 1.38085 * 120.02015 * 180.27910 * 4 3 2 6 6 C 1.38925 * 119.97831 * 359.49526 * 5 4 3 7 7 S 1.76197 * 120.02463 * 180.27758 * 6 5 4 8 8 C 1.81398 * 103.00353 * 353.91531 * 7 6 5 9 9 H 1.09004 * 109.47208 * 51.76246 * 8 7 6 10 10 C 1.53000 * 109.47226 * 171.76393 * 8 7 6 11 11 C 1.50707 * 109.46977 * 291.76633 * 8 7 6 12 12 O 1.21290 * 119.99865 * 341.93953 * 11 8 7 13 13 N 1.34771 * 120.00025 * 161.94247 * 11 8 7 14 14 C 1.37098 * 120.00303 * 128.19548 * 13 11 8 15 15 H 1.07999 * 120.00725 * 158.41884 * 14 13 11 16 16 C 1.38957 * 119.99725 * 338.41932 * 14 13 11 17 17 N 1.31413 * 119.99874 * 352.68451 * 16 14 13 18 18 Si 1.86798 * 119.99981 * 172.68152 * 16 14 13 19 19 H 1.48505 * 109.47104 * 90.00230 * 18 16 14 20 20 H 1.48497 * 109.47233 * 210.00251 * 18 16 14 21 21 H 1.48507 * 109.47276 * 330.00355 * 18 16 14 22 22 C 1.46504 * 120.00182 * 308.19462 * 13 11 8 23 23 C 1.50701 * 109.46789 * 93.76912 * 22 13 11 24 24 O 1.20826 * 120.00260 * 0.02562 * 23 22 13 25 25 O 1.34240 * 119.99610 * 180.02562 * 23 22 13 26 26 C 1.38917 * 119.94984 * 0.50357 * 6 5 4 27 27 C 1.38095 * 119.97426 * 359.75409 * 26 6 5 28 28 H 1.09004 * 109.46980 * 59.99583 * 1 2 3 29 29 H 1.08999 * 109.46934 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46840 * 299.99833 * 1 2 3 31 31 H 1.07998 * 119.98913 * 0.02562 * 4 3 2 32 32 H 1.08006 * 120.00946 * 179.72642 * 5 4 3 33 33 H 1.09005 * 109.46691 * 173.85843 * 10 8 7 34 34 H 1.08995 * 109.46766 * 293.85367 * 10 8 7 35 35 H 1.08995 * 109.47042 * 53.86306 * 10 8 7 36 36 H 0.97000 * 119.99702 * 185.00598 * 17 16 14 37 37 H 1.08995 * 109.47563 * 213.76881 * 22 13 11 38 38 H 1.08996 * 109.46600 * 333.77288 * 22 13 11 39 39 H 0.96697 * 116.99826 * 180.02562 * 25 23 22 40 40 H 1.08000 * 120.01369 * 179.72727 * 26 6 5 41 41 H 1.08000 * 119.98695 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4318 1.2838 0.0005 5 6 4.0597 2.5136 0.0064 6 6 3.3036 3.6791 0.0011 7 16 4.1035 5.2490 0.0011 8 6 5.8540 4.8151 0.1962 9 1 6.1294 4.0710 -0.5512 10 6 6.7136 6.0671 0.0102 11 6 6.0809 4.2501 1.5748 12 8 5.2648 4.4431 2.4511 13 7 7.1906 3.5305 1.8340 14 6 7.9822 3.8533 2.9057 15 1 8.6472 3.1145 3.3280 16 6 7.9290 5.1313 3.4488 17 7 7.2312 6.0707 2.8510 18 14 8.8494 5.5138 5.0287 19 1 10.2214 5.9789 4.7021 20 1 8.1307 6.5775 5.7751 21 1 8.9278 4.2890 5.8648 22 6 7.5509 2.4032 0.9704 23 6 8.5075 2.8727 -0.0953 24 8 8.8531 4.0299 -0.1297 25 8 8.9755 2.0050 -1.0064 26 6 1.9163 3.6058 0.0005 27 6 1.2905 2.3748 0.0001 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0194 0.3776 0.0005 32 1 5.1383 2.5694 0.0112 33 1 7.7537 5.8302 0.2343 34 1 6.6336 6.4128 -1.0203 35 1 6.3659 6.8498 0.6843 36 1 7.2523 6.9797 3.1888 37 1 8.0260 1.6252 1.5678 38 1 6.6521 2.0032 0.5013 39 1 9.5869 2.3526 -1.6701 40 1 1.3275 4.5112 0.0009 41 1 0.2120 2.3176 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738069607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:54 Heat of formation + Delta-G solvation = -122.404233 kcal Electronic energy + Delta-G solvation = -28258.592397 eV Core-core repulsion = 24231.001790 eV Total energy + Delta-G solvation = -4027.590606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.34670 -40.96092 -40.03214 -38.27816 -36.94240 -36.07432 -34.09089 -33.54779 -32.14294 -31.20244 -29.29965 -28.10758 -26.91457 -25.36882 -23.65086 -23.23608 -22.70388 -21.17925 -19.36205 -19.03002 -18.76540 -18.14942 -17.72297 -17.26001 -17.14860 -16.96779 -16.59794 -16.43382 -16.17811 -15.73964 -15.51945 -15.42488 -14.77054 -14.57698 -14.16057 -13.99448 -13.75649 -13.63903 -13.50151 -13.16749 -13.04349 -12.86612 -12.76276 -12.70371 -12.42690 -12.27706 -12.18282 -12.10594 -12.05081 -11.90244 -11.54266 -11.16860 -11.01969 -10.32362 -10.09291 -10.02282 -9.38588 -8.19135 -8.12699 -5.75941 0.22497 0.29203 0.60486 1.39987 1.41378 1.44399 1.46831 1.54075 1.89055 2.28967 2.38078 2.40597 2.65583 3.00600 3.30848 3.63798 3.80131 3.89677 3.96314 4.05089 4.25303 4.32682 4.39934 4.45400 4.48334 4.49513 4.58905 4.64449 4.77116 4.83440 4.95269 5.01835 5.02317 5.25333 5.29622 5.41543 5.51621 5.60925 5.88932 6.03192 6.43100 6.93966 7.18394 7.28908 7.54911 8.01468 8.90347 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012753 B = 0.004220 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.036543 B = 6634.256536 C = 7105.354717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.113 3.887 4 C -0.136 4.136 5 C -0.109 4.109 6 C -0.125 4.125 7 S -0.108 6.108 8 C -0.074 4.074 9 H 0.088 0.912 10 C -0.091 4.091 11 C 0.562 3.438 12 O -0.538 6.538 13 N -0.513 5.513 14 C -0.315 4.315 15 H 0.095 0.905 16 C -0.019 4.019 17 N -0.883 5.883 18 Si 0.987 3.013 19 H -0.276 1.276 20 H -0.295 1.295 21 H -0.263 1.263 22 C 0.119 3.881 23 C 0.447 3.553 24 O -0.520 6.520 25 O -0.515 6.515 26 C -0.072 4.072 27 C -0.181 4.181 28 H 0.068 0.932 29 H 0.121 0.879 30 H 0.062 0.938 31 H 0.149 0.851 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.262 0.738 37 H 0.132 0.868 38 H 0.110 0.890 39 H 0.418 0.582 40 H 0.141 0.859 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.974 -10.770 -10.121 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.066 3.934 4 C -0.156 4.156 5 C -0.133 4.133 6 C -0.238 4.238 7 S 0.137 5.863 8 C -0.207 4.207 9 H 0.106 0.894 10 C -0.150 4.150 11 C 0.350 3.650 12 O -0.413 6.413 13 N -0.240 5.240 14 C -0.443 4.443 15 H 0.113 0.887 16 C -0.221 4.221 17 N -0.523 5.523 18 Si 0.813 3.187 19 H -0.202 1.202 20 H -0.222 1.222 21 H -0.188 1.188 22 C -0.007 4.007 23 C 0.287 3.713 24 O -0.408 6.408 25 O -0.328 6.328 26 C -0.096 4.096 27 C -0.201 4.201 28 H 0.087 0.913 29 H 0.139 0.861 30 H 0.080 0.920 31 H 0.167 0.833 32 H 0.133 0.867 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.149 0.851 38 H 0.128 0.872 39 H 0.279 0.721 40 H 0.159 0.841 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.008 -9.312 -9.397 16.005 hybrid contribution 1.649 -0.040 0.465 1.714 sum -7.360 -9.352 -8.932 14.880 Atomic orbital electron populations 1.23385 0.76370 1.05729 1.02353 1.86071 1.23540 1.26022 1.88729 1.19020 0.92136 0.84966 0.97323 1.20455 0.92435 0.97853 1.04878 1.21056 0.99201 0.91857 1.01189 1.21824 0.97751 0.96377 1.07846 1.84926 1.03039 1.08755 1.89588 1.23762 0.94832 1.02846 0.99239 0.89360 1.21255 0.99974 0.93839 0.99892 1.19253 0.80218 0.77565 0.87944 1.90454 1.43860 1.57590 1.49366 1.42796 1.22625 1.32236 1.26334 1.19608 1.20020 0.96715 1.07917 0.88705 1.25931 0.98576 0.95495 1.02074 1.69635 1.41039 1.01545 1.40110 0.85001 0.77406 0.77844 0.78458 1.20153 1.22174 1.18778 1.21458 0.97232 0.91833 0.90197 1.25140 0.80479 0.84182 0.81528 1.90692 1.56819 1.20885 1.72358 1.84543 1.61494 1.44849 1.41913 1.20763 0.91401 0.98825 0.98584 1.21408 1.01390 0.90762 1.06537 0.91310 0.86059 0.91969 0.83284 0.86698 0.90080 0.91996 0.93090 0.92831 0.85077 0.87216 0.72077 0.84106 0.81836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -7.58 10.50 -93.58 -0.98 -8.57 16 3 C 0.11 3.06 6.69 22.50 0.15 3.21 16 4 C -0.14 -4.05 9.98 22.35 0.22 -3.82 16 5 C -0.11 -3.80 8.81 22.40 0.20 -3.61 16 6 C -0.12 -4.57 6.03 22.60 0.14 -4.44 16 7 S -0.11 -4.41 20.55 -56.49 -1.16 -5.57 16 8 C -0.07 -3.24 1.78 29.85 0.05 -3.18 16 9 H 0.09 3.53 5.76 -2.39 -0.01 3.52 16 10 C -0.09 -4.11 7.83 71.98 0.56 -3.55 16 11 C 0.56 28.27 2.49 87.66 0.22 28.49 16 12 O -0.54 -31.59 15.41 -3.06 -0.05 -31.64 16 13 N -0.51 -24.53 2.11 -639.60 -1.35 -25.88 16 14 C -0.32 -16.52 9.51 84.04 0.80 -15.72 16 15 H 0.10 4.62 7.84 -2.91 -0.02 4.60 16 16 C -0.02 -1.04 5.13 84.93 0.44 -0.60 16 17 N -0.88 -50.72 8.61 21.67 0.19 -50.53 16 18 Si 0.99 44.51 29.56 68.60 2.03 46.54 16 19 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 21 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 22 C 0.12 4.27 5.64 85.63 0.48 4.76 16 23 C 0.45 15.32 7.54 71.24 0.54 15.86 16 24 O -0.52 -22.02 14.23 21.96 0.31 -21.71 16 25 O -0.51 -12.61 13.42 -51.51 -0.69 -13.30 16 26 C -0.07 -2.19 9.79 22.40 0.22 -1.97 16 27 C -0.18 -4.55 9.03 22.35 0.20 -4.35 16 28 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 29 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 0.76 7.66 -2.39 -0.02 0.75 16 31 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 32 H 0.12 4.08 2.55 -2.91 -0.01 4.07 16 33 H 0.08 4.07 5.73 -2.38 -0.01 4.06 16 34 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.05 2.53 7.37 -2.39 -0.02 2.51 16 36 H 0.26 14.79 8.32 -92.71 -0.77 14.02 16 37 H 0.13 4.04 8.07 -2.39 -0.02 4.02 16 38 H 0.11 3.44 5.45 -2.39 -0.01 3.42 16 39 H 0.42 6.72 9.10 -74.06 -0.67 6.05 16 40 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 41 H 0.16 2.85 6.29 -2.91 -0.02 2.83 16 Total: -1.00 -75.75 349.96 4.06 -71.69 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.43 Total: 26.57 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 5.33 Total: 12.40 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -1.16 Total: -76.41 kcal Atomic # 8 Polarization: -73.81 SS G_CDS: -1.41 Total: -75.22 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: -4.41 SS G_CDS: -1.16 Total: -5.57 kcal Total: -75.75 4.06 -71.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738069607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.710 kcal (2) G-P(sol) polarization free energy of solvation -75.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds