Wall clock time and date at job start Tue Mar 31 2020 23:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00485 * 2 1 4 4 H 1.48502 * 109.46766 * 270.00333 * 3 2 1 5 5 H 1.48494 * 109.47047 * 29.99818 * 3 2 1 6 6 H 1.48498 * 109.47212 * 149.99921 * 3 2 1 7 7 C 1.37880 * 119.99428 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99853 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00136 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47065 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.47215 * 179.97438 * 11 10 9 13 13 O 1.42096 * 110.54199 * 68.37543 * 12 11 10 14 14 O 1.42107 * 110.54295 * 291.62605 * 12 11 10 15 15 N 1.65594 * 104.45414 * 180.02562 * 12 11 10 16 16 C 1.46505 * 120.00065 * 64.99761 * 15 12 11 17 17 C 1.52995 * 109.47303 * 165.00618 * 16 15 12 18 18 S 1.81398 * 109.47243 * 180.02562 * 17 16 15 19 19 O 1.42105 * 108.57805 * 65.50983 * 18 17 16 20 20 O 1.42097 * 108.57862 * 294.48320 * 18 17 16 21 21 C 1.81400 * 101.92199 * 179.97438 * 18 17 16 22 22 C 1.53006 * 109.47145 * 179.97438 * 21 18 17 23 23 C 1.53001 * 117.49995 * 243.75128 * 22 21 18 24 24 C 1.53001 * 117.49740 * 175.08947 * 22 21 18 25 25 H 0.97000 * 119.99509 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47287 * 59.99915 * 9 7 2 27 27 H 1.09006 * 109.47258 * 299.99752 * 9 7 2 28 28 H 1.08998 * 109.47034 * 59.99819 * 10 9 7 29 29 H 1.08996 * 109.46874 * 299.99902 * 10 9 7 30 30 H 1.08998 * 109.47302 * 60.00032 * 11 10 9 31 31 H 1.09003 * 109.47715 * 300.00182 * 11 10 9 32 32 H 0.97001 * 120.00585 * 245.00364 * 15 12 11 33 33 H 1.08997 * 109.46909 * 44.99816 * 16 15 12 34 34 H 1.09003 * 109.47041 * 285.00805 * 16 15 12 35 35 H 1.08997 * 109.47793 * 59.99739 * 17 16 15 36 36 H 1.09007 * 109.46890 * 299.99729 * 17 16 15 37 37 H 1.09001 * 109.46713 * 60.00078 * 21 18 17 38 38 H 1.08993 * 109.47294 * 299.99610 * 21 18 17 39 39 H 1.09004 * 115.54324 * 29.42026 * 22 21 18 40 40 H 1.09001 * 117.49892 * 359.97438 * 23 22 21 41 41 H 1.09004 * 117.49576 * 145.02113 * 23 22 21 42 42 H 1.09000 * 117.49563 * 214.97971 * 24 22 21 43 43 H 1.09000 * 117.49822 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0017 10 6 2.2450 -3.6622 0.0015 11 6 1.4799 -4.9871 0.0033 12 16 2.6585 -6.3661 0.0022 13 8 3.3571 -6.4258 1.2382 14 8 3.3535 -6.4271 -1.2358 15 7 1.7082 -7.7221 0.0036 16 6 0.8473 -8.0145 -1.1452 17 6 0.3737 -9.4674 -1.0709 18 16 -0.6916 -9.8297 -2.4938 19 8 0.0910 -9.7498 -3.6772 20 8 -1.8712 -9.0445 -2.3876 21 6 -1.1252 -11.5672 -2.2045 22 6 -2.0407 -12.0582 -3.3279 23 6 -3.4625 -12.4768 -2.9484 24 6 -2.4272 -13.5386 -3.3280 25 1 -0.4849 0.8401 0.0004 26 1 0.6238 -2.5575 -0.8880 27 1 0.6245 -2.5563 0.8920 28 1 2.8724 -3.6041 0.8909 29 1 2.8709 -3.6049 -0.8890 30 1 0.8523 -5.0455 -0.8859 31 1 0.8542 -5.0443 0.8940 32 1 1.7213 -8.3229 0.7651 33 1 1.4078 -7.8616 -2.0674 34 1 -0.0164 -7.3496 -1.1305 35 1 -0.1868 -9.6203 -0.1487 36 1 1.2374 -10.1323 -1.0856 37 1 -1.6419 -11.6584 -1.2491 38 1 -0.2173 -12.1699 -2.1857 39 1 -1.8994 -11.5747 -4.2945 40 1 -3.7456 -12.4029 -1.8984 41 1 -4.2566 -12.2692 -3.6656 42 1 -2.5406 -14.0290 -4.2948 43 1 -2.0296 -14.1626 -2.5276 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765231610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:56 Heat of formation + Delta-G solvation = -132.311128 kcal Electronic energy + Delta-G solvation = -24674.220207 eV Core-core repulsion = 20781.643957 eV Total energy + Delta-G solvation = -3892.576250 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.105 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -38.11188 -37.37995 -37.04808 -36.51651 -36.23566 -35.79676 -34.68217 -32.18907 -30.76697 -29.89248 -27.82485 -24.01900 -23.72630 -22.97064 -21.47220 -20.71913 -19.58064 -19.17649 -17.79543 -17.58250 -16.80892 -16.61424 -16.55884 -16.24395 -15.76434 -15.46379 -15.20607 -15.06687 -14.79916 -14.47218 -14.17753 -13.95179 -13.15160 -12.70956 -12.55215 -12.46926 -12.41419 -12.36231 -12.27541 -12.18705 -12.09464 -11.99612 -11.87832 -11.82932 -11.80561 -11.27846 -11.15595 -10.91785 -10.86048 -10.82883 -10.50212 -10.45304 -9.95649 -9.88458 -9.34957 -9.10410 -8.39893 -6.04762 -4.07910 -0.58611 0.38532 2.24539 2.71040 3.03720 3.13334 3.31514 3.37556 3.41456 3.55801 3.79701 3.86663 3.94368 4.09237 4.29103 4.34300 4.37114 4.43246 4.45375 4.69423 4.74929 4.78489 4.92970 5.08504 5.10055 5.14469 5.16696 5.31622 5.33127 5.48004 5.50103 5.54202 5.86731 6.25284 6.43283 6.70809 6.86699 7.57576 7.67240 7.93112 8.33284 8.98275 9.56754 11.06431 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018132 B = 0.002137 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.856361 B =13101.995007 C =14145.556058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.030 3.970 10 C -0.106 4.106 11 C -0.610 4.610 12 S 2.597 3.403 13 O -0.960 6.960 14 O -0.958 6.958 15 N -1.120 6.120 16 C 0.125 3.875 17 C -0.628 4.628 18 S 2.424 3.576 19 O -0.927 6.927 20 O -0.924 6.924 21 C -0.580 4.580 22 C -0.156 4.156 23 C -0.170 4.170 24 C -0.164 4.164 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.021 0.979 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.417 0.583 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.510 -29.951 -2.563 30.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.009 4.009 10 C -0.146 4.146 11 C -0.742 4.742 12 S 2.694 3.306 13 O -0.950 6.950 14 O -0.948 6.948 15 N -0.878 5.878 16 C -0.003 4.003 17 C -0.757 4.757 18 S 2.604 3.396 19 O -0.924 6.924 20 O -0.921 6.921 21 C -0.709 4.709 22 C -0.175 4.175 23 C -0.207 4.207 24 C -0.202 4.202 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.251 0.749 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.137 0.863 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.945 -29.177 -3.405 29.788 hybrid contribution -0.053 0.234 1.135 1.160 sum -4.998 -28.943 -2.269 29.459 Atomic orbital electron populations 1.69960 1.06078 1.26789 1.50530 1.25028 0.94902 0.99391 0.95112 0.86542 0.79837 0.83155 0.78190 1.20560 1.21191 1.19775 1.21247 0.93249 0.90873 1.51115 0.92357 1.19075 0.93537 0.90424 0.97822 1.21514 0.99415 0.91549 1.02077 1.30560 1.16341 1.15778 1.11507 1.05456 0.75649 0.75209 0.74330 1.93587 1.70433 1.85812 1.45159 1.93585 1.70190 1.85578 1.45441 1.55721 1.62035 1.43018 1.27018 1.20938 0.95739 0.92552 0.91049 1.30641 1.16960 1.05981 1.22131 1.08076 0.76428 0.77993 0.77136 1.93636 1.70933 1.85547 1.42240 1.93633 1.45916 1.66144 1.86390 1.29940 1.09377 1.24552 1.06991 1.21684 0.97236 1.00435 0.98179 1.23171 0.91700 1.02707 1.03128 1.23033 1.02951 0.90504 1.03737 0.92884 0.96013 0.96078 0.91505 0.91426 0.85293 0.85047 0.74911 0.88370 0.89718 0.84026 0.83939 0.84762 0.84474 0.86327 0.88062 0.87807 0.88006 0.88257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -14.87 9.11 -34.44 -0.31 -15.19 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.75 4.97 -27.88 -0.14 0.62 16 10 C -0.11 -2.13 5.16 -26.73 -0.14 -2.27 16 11 C -0.61 -9.16 6.07 37.16 0.23 -8.93 16 12 S 2.60 36.50 5.46 -107.50 -0.59 35.91 16 13 O -0.96 -16.08 18.08 -57.54 -1.04 -17.12 16 14 O -0.96 -16.45 17.49 -57.54 -1.01 -17.46 16 15 N -1.12 -10.77 5.89 -10.61 -0.06 -10.83 16 16 C 0.13 1.10 6.14 -4.04 -0.02 1.08 16 17 C -0.63 -3.07 5.95 37.15 0.22 -2.85 16 18 S 2.42 16.56 4.66 -107.50 -0.50 16.06 16 19 O -0.93 -9.96 18.10 -57.83 -1.05 -11.01 16 20 O -0.92 -9.69 18.10 -57.83 -1.05 -10.74 16 21 C -0.58 -2.13 6.09 37.16 0.23 -1.90 16 22 C -0.16 -0.87 5.75 -90.62 -0.52 -1.39 16 23 C -0.17 -0.84 10.18 -26.69 -0.27 -1.11 16 24 C -0.16 -0.70 10.25 -26.69 -0.27 -0.98 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 31 H 0.13 1.73 8.14 -51.92 -0.42 1.31 16 32 H 0.42 2.90 8.62 -34.47 -0.30 2.60 16 33 H 0.10 0.93 7.69 -51.93 -0.40 0.53 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.14 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.14 0.37 8.14 -51.92 -0.42 -0.05 16 37 H 0.13 0.18 7.87 -51.92 -0.41 -0.23 16 38 H 0.14 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.12 0.71 8.06 -51.93 -0.42 0.29 16 40 H 0.10 0.41 8.03 -51.93 -0.42 -0.01 16 41 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 389.22 15.07 5.87 5.87 Total: -1.00 -41.28 389.22 -11.79 -53.08 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -6.98 Total: -3.11 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: -1.11 Total: -31.38 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.67 Total: -36.77 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -4.14 Total: -56.33 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 53.06 SS G_CDS: -1.09 Total: 51.97 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -41.28 -11.79 -53.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765231610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.234 kcal (2) G-P(sol) polarization free energy of solvation -41.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds