Wall clock time and date at job start Tue Mar 31 2020 23:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00485 * 2 1 4 4 H 1.48502 * 109.46766 * 270.00333 * 3 2 1 5 5 H 1.48494 * 109.47047 * 29.99818 * 3 2 1 6 6 H 1.48498 * 109.47212 * 149.99921 * 3 2 1 7 7 C 1.37880 * 119.99428 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99853 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00136 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47065 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.47215 * 179.97438 * 11 10 9 13 13 O 1.42096 * 110.54199 * 68.37543 * 12 11 10 14 14 O 1.42107 * 110.54295 * 291.62605 * 12 11 10 15 15 N 1.65594 * 104.45414 * 180.02562 * 12 11 10 16 16 C 1.46505 * 120.00065 * 64.99761 * 15 12 11 17 17 C 1.52995 * 109.47303 * 165.00618 * 16 15 12 18 18 S 1.81398 * 109.47243 * 180.02562 * 17 16 15 19 19 O 1.42105 * 108.57805 * 65.50983 * 18 17 16 20 20 O 1.42097 * 108.57862 * 294.48320 * 18 17 16 21 21 C 1.81400 * 101.92199 * 179.97438 * 18 17 16 22 22 C 1.53006 * 109.47145 * 179.97438 * 21 18 17 23 23 C 1.53001 * 117.49995 * 243.75128 * 22 21 18 24 24 C 1.53001 * 117.49740 * 175.08947 * 22 21 18 25 25 H 0.97000 * 119.99509 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47287 * 59.99915 * 9 7 2 27 27 H 1.09006 * 109.47258 * 299.99752 * 9 7 2 28 28 H 1.08998 * 109.47034 * 59.99819 * 10 9 7 29 29 H 1.08996 * 109.46874 * 299.99902 * 10 9 7 30 30 H 1.08998 * 109.47302 * 60.00032 * 11 10 9 31 31 H 1.09003 * 109.47715 * 300.00182 * 11 10 9 32 32 H 0.97001 * 120.00585 * 245.00364 * 15 12 11 33 33 H 1.08997 * 109.46909 * 44.99816 * 16 15 12 34 34 H 1.09003 * 109.47041 * 285.00805 * 16 15 12 35 35 H 1.08997 * 109.47793 * 59.99739 * 17 16 15 36 36 H 1.09007 * 109.46890 * 299.99729 * 17 16 15 37 37 H 1.09001 * 109.46713 * 60.00078 * 21 18 17 38 38 H 1.08993 * 109.47294 * 299.99610 * 21 18 17 39 39 H 1.09004 * 115.54324 * 29.42026 * 22 21 18 40 40 H 1.09001 * 117.49892 * 359.97438 * 23 22 21 41 41 H 1.09004 * 117.49576 * 145.02113 * 23 22 21 42 42 H 1.09000 * 117.49563 * 214.97971 * 24 22 21 43 43 H 1.09000 * 117.49822 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0017 10 6 2.2450 -3.6622 0.0015 11 6 1.4799 -4.9871 0.0033 12 16 2.6585 -6.3661 0.0022 13 8 3.3571 -6.4258 1.2382 14 8 3.3535 -6.4271 -1.2358 15 7 1.7082 -7.7221 0.0036 16 6 0.8473 -8.0145 -1.1452 17 6 0.3737 -9.4674 -1.0709 18 16 -0.6916 -9.8297 -2.4938 19 8 0.0910 -9.7498 -3.6772 20 8 -1.8712 -9.0445 -2.3876 21 6 -1.1252 -11.5672 -2.2045 22 6 -2.0407 -12.0582 -3.3279 23 6 -3.4625 -12.4768 -2.9484 24 6 -2.4272 -13.5386 -3.3280 25 1 -0.4849 0.8401 0.0004 26 1 0.6238 -2.5575 -0.8880 27 1 0.6245 -2.5563 0.8920 28 1 2.8724 -3.6041 0.8909 29 1 2.8709 -3.6049 -0.8890 30 1 0.8523 -5.0455 -0.8859 31 1 0.8542 -5.0443 0.8940 32 1 1.7213 -8.3229 0.7651 33 1 1.4078 -7.8616 -2.0674 34 1 -0.0164 -7.3496 -1.1305 35 1 -0.1868 -9.6203 -0.1487 36 1 1.2374 -10.1323 -1.0856 37 1 -1.6419 -11.6584 -1.2491 38 1 -0.2173 -12.1699 -2.1857 39 1 -1.8994 -11.5747 -4.2945 40 1 -3.7456 -12.4029 -1.8984 41 1 -4.2566 -12.2692 -3.6656 42 1 -2.5406 -14.0290 -4.2948 43 1 -2.0296 -14.1626 -2.5276 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765231610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:55 Heat of formation + Delta-G solvation = -166.185665 kcal Electronic energy + Delta-G solvation = -24675.689117 eV Core-core repulsion = 20781.643957 eV Total energy + Delta-G solvation = -3894.045160 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.105 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -38.44481 -38.26437 -38.01585 -37.25941 -37.07465 -36.88399 -36.47202 -34.17016 -31.36790 -30.24650 -29.66705 -25.63844 -24.63369 -23.27598 -22.45893 -21.83609 -20.56944 -19.83065 -18.83631 -18.55752 -18.19424 -17.40053 -17.30943 -17.14437 -16.90566 -16.49755 -16.29892 -15.85126 -15.75966 -15.53453 -15.16912 -14.50407 -14.24299 -14.09875 -13.87792 -13.53607 -13.29622 -13.20292 -13.15841 -13.09362 -13.05368 -13.01176 -12.90642 -12.76413 -12.75049 -12.63041 -12.37693 -12.27588 -12.16699 -11.75171 -11.74713 -11.39213 -11.16569 -11.15838 -10.87070 -10.58078 -10.50304 -8.23117 -6.34230 -1.10286 -0.74011 1.39746 1.40718 1.52015 1.71395 1.82693 2.39337 2.59489 2.70907 2.77004 3.10322 3.11880 3.19370 3.38205 3.51990 3.73059 3.80186 3.90529 3.92180 4.02044 4.11849 4.26569 4.32502 4.38918 4.40155 4.53656 4.56703 4.65279 4.80109 4.87624 4.96022 5.03108 5.06626 5.15005 5.24607 5.45045 5.62380 5.79083 6.07499 6.19014 6.81632 7.35049 8.88379 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018132 B = 0.002137 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.856361 B =13101.995007 C =14145.556058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.061 0.939 9 C 0.029 3.971 10 C -0.107 4.107 11 C -0.616 4.616 12 S 2.631 3.369 13 O -0.984 6.984 14 O -0.990 6.990 15 N -1.099 6.099 16 C 0.099 3.901 17 C -0.614 4.614 18 S 2.415 3.585 19 O -0.980 6.980 20 O -0.973 6.973 21 C -0.556 4.556 22 C -0.184 4.184 23 C -0.181 4.181 24 C -0.154 4.154 25 H 0.265 0.735 26 H 0.002 0.998 27 H 0.004 0.996 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.143 0.857 31 H 0.151 0.849 32 H 0.433 0.567 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.182 0.818 36 H 0.173 0.827 37 H 0.168 0.832 38 H 0.169 0.831 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.065 -32.099 -1.111 32.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.590 4.590 8 H 0.079 0.921 9 C -0.009 4.009 10 C -0.146 4.146 11 C -0.747 4.747 12 S 2.726 3.274 13 O -0.975 6.975 14 O -0.979 6.979 15 N -0.862 5.862 16 C -0.029 4.029 17 C -0.744 4.744 18 S 2.602 3.398 19 O -0.977 6.977 20 O -0.970 6.970 21 C -0.687 4.687 22 C -0.204 4.204 23 C -0.218 4.218 24 C -0.192 4.192 25 H 0.074 0.926 26 H 0.020 0.980 27 H 0.022 0.978 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.161 0.839 31 H 0.169 0.831 32 H 0.271 0.729 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.200 0.800 36 H 0.191 0.809 37 H 0.185 0.815 38 H 0.187 0.813 39 H 0.120 0.880 40 H 0.132 0.868 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.500 -31.291 -1.968 31.674 hybrid contribution -0.258 0.775 0.684 1.065 sum -4.757 -30.516 -1.283 30.911 Atomic orbital electron populations 1.70077 1.07646 1.27892 1.51368 1.25964 0.95844 1.03319 0.94617 0.85455 0.78700 0.78448 0.78522 1.19810 1.20525 1.18823 1.21748 0.93768 0.92501 1.51014 0.92080 1.18981 0.94080 0.91933 0.95936 1.21316 0.98675 0.92406 1.02237 1.30567 1.16861 1.13916 1.13354 1.04210 0.75065 0.75255 0.72916 1.93548 1.71443 1.86348 1.46122 1.93549 1.71310 1.86178 1.46895 1.55190 1.61555 1.41453 1.28016 1.21254 0.95820 0.95737 0.90046 1.30527 1.17897 1.03732 1.22286 1.07912 0.75512 0.79376 0.77023 1.93571 1.71735 1.86930 1.45497 1.93572 1.47677 1.68681 1.87099 1.29743 1.10806 1.20428 1.07765 1.21840 0.98326 1.01777 0.98416 1.23312 0.91486 1.03210 1.03799 1.23152 1.01769 0.89787 1.04478 0.92641 0.98009 0.97750 0.91258 0.91513 0.83870 0.83082 0.72860 0.89637 0.88821 0.79991 0.80915 0.81452 0.81329 0.88024 0.86834 0.88315 0.87816 0.86472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -31.71 9.11 25.60 0.23 -31.47 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.51 4.97 29.85 0.15 1.66 16 10 C -0.11 -4.35 5.16 30.59 0.16 -4.19 16 11 C -0.62 -18.13 6.07 71.98 0.44 -17.69 16 12 S 2.63 70.71 5.46 -56.49 -0.31 70.40 16 13 O -0.98 -31.58 18.08 -127.65 -2.31 -33.88 16 14 O -0.99 -33.46 17.49 -127.65 -2.23 -35.69 16 15 N -1.10 -18.31 5.89 -187.49 -1.10 -19.41 16 16 C 0.10 1.56 6.14 86.38 0.53 2.09 16 17 C -0.61 -3.93 5.95 71.98 0.43 -3.50 16 18 S 2.41 30.57 4.66 -56.49 -0.26 30.31 16 19 O -0.98 -21.74 18.10 -127.37 -2.30 -24.05 16 20 O -0.97 -20.61 18.10 -127.37 -2.31 -22.92 16 21 C -0.56 -2.33 6.09 71.98 0.44 -1.89 16 22 C -0.18 -1.80 5.75 -10.79 -0.06 -1.87 16 23 C -0.18 -1.52 10.18 30.62 0.31 -1.21 16 24 C -0.15 -0.98 10.25 30.62 0.31 -0.66 16 25 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 26 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 27 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 28 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.14 3.76 8.14 -2.39 -0.02 3.74 16 31 H 0.15 3.80 8.14 -2.39 -0.02 3.78 16 32 H 0.43 4.43 8.62 -96.74 -0.83 3.59 16 33 H 0.09 1.59 7.69 -2.39 -0.02 1.57 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.18 -0.29 8.14 -2.39 -0.02 -0.31 16 36 H 0.17 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.17 -0.36 7.87 -2.39 -0.02 -0.37 16 38 H 0.17 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H 0.10 1.30 8.06 -2.39 -0.02 1.28 16 40 H 0.11 0.64 8.03 -2.39 -0.02 0.62 16 41 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -92.48 389.22 -4.95 -97.43 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 0.17 Total: 5.46 kcal Atomic # 6 Polarization: -61.63 SS G_CDS: 3.40 Total: -58.23 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -0.82 Total: -75.51 kcal Atomic # 8 Polarization: -107.39 SS G_CDS: -9.15 Total: -116.54 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 101.28 SS G_CDS: -0.57 Total: 100.71 kcal Total: -92.48 -4.95 -97.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765231610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.758 kcal (2) G-P(sol) polarization free energy of solvation -92.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds