Wall clock time and date at job start Tue Mar 31 2020 22:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81402 * 102.99933 * 2 1 4 4 C 1.53001 * 109.46855 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47035 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00148 * 180.02562 * 5 4 3 7 7 S 1.71202 * 119.99904 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99961 * 179.97438 * 6 5 4 9 9 N 1.40100 * 119.99992 * 359.97438 * 8 6 5 10 10 C 1.29754 * 120.00138 * 180.02562 * 9 8 6 11 11 C 1.47495 * 120.00295 * 180.02562 * 10 9 8 12 12 C 1.39762 * 120.11922 * 359.97438 * 11 10 9 13 13 C 1.37980 * 119.97414 * 180.02562 * 12 11 10 14 14 C 1.38251 * 120.23127 * 359.72279 * 13 12 11 15 15 C 1.38980 * 120.24843 * 0.54944 * 14 13 12 16 16 O 1.35760 * 119.98846 * 179.72355 * 15 14 13 17 17 C 1.34837 * 116.99569 * 174.18600 * 16 15 14 18 18 H 1.07995 * 119.99773 * 5.05821 * 17 16 15 19 19 C 1.38655 * 119.99834 * 185.05707 * 17 16 15 20 20 N 1.31558 * 119.99527 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99961 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47260 * 59.99733 * 21 19 17 23 23 H 1.48495 * 109.46899 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46760 * 300.00004 * 21 19 17 25 25 C 1.38607 * 120.01329 * 359.45386 * 15 14 13 26 26 H 1.08994 * 109.47396 * 300.00352 * 1 2 3 27 27 H 1.09006 * 109.46950 * 60.00445 * 1 2 3 28 28 H 1.09007 * 109.47135 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47041 * 60.00206 * 3 2 1 30 30 H 1.08991 * 109.47064 * 299.99900 * 3 2 1 31 31 H 1.09000 * 109.47263 * 60.00087 * 4 3 2 32 32 H 1.08998 * 109.47439 * 299.99790 * 4 3 2 33 33 H 0.97002 * 119.99297 * 0.02562 * 5 4 3 34 34 H 0.96997 * 119.99888 * 180.02562 * 8 6 5 35 35 H 1.07999 * 119.99916 * 359.97438 * 10 9 8 36 36 H 1.07998 * 120.01275 * 359.97438 * 12 11 10 37 37 H 1.08004 * 119.87833 * 179.97438 * 13 12 11 38 38 H 1.08007 * 119.87430 * 180.27966 * 14 13 12 39 39 H 0.97007 * 119.99382 * 180.02562 * 20 19 17 40 40 H 1.08009 * 120.11063 * 180.25211 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 7 4.0719 3.3674 0.0013 6 6 5.3607 3.7615 0.0014 7 16 6.6128 2.5939 0.0001 8 7 5.6639 5.0747 0.0014 9 7 4.6392 6.0302 0.0008 10 6 4.9311 7.2945 0.0004 11 6 3.8524 8.3004 0.0003 12 6 2.5150 7.8946 0.0002 13 6 1.5082 8.8382 -0.0004 14 6 1.8172 10.1857 0.0049 15 6 3.1439 10.5998 -0.0007 16 8 3.4413 11.9244 -0.0011 17 6 4.7421 12.2597 0.1151 18 1 5.4996 11.4901 0.1208 19 6 5.1071 13.5927 0.2272 20 7 4.1841 14.5302 0.2197 21 14 6.9093 14.0573 0.3875 22 1 7.6513 13.5814 -0.8075 23 1 7.0325 15.5335 0.4908 24 1 7.4766 13.4262 1.6062 25 6 4.1633 9.6607 -0.0001 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8031 2.2371 0.8900 30 1 1.8031 2.2371 -0.8899 31 1 4.1616 1.4702 -0.8891 32 1 4.1608 1.4704 0.8908 33 1 3.3624 4.0289 0.0016 34 1 6.5915 5.3583 0.0011 35 1 5.9639 7.6102 0.0009 36 1 2.2696 6.8428 -0.0003 37 1 0.4753 8.5228 -0.0009 38 1 1.0246 10.9194 0.0089 39 1 4.4395 15.4628 0.2978 40 1 5.1949 9.9808 -0.0003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769605028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:15 Heat of formation + Delta-G solvation = 54.905150 kcal Electronic energy + Delta-G solvation = -22696.248022 eV Core-core repulsion = 19151.391750 eV Total energy + Delta-G solvation = -3544.856272 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.58492 -39.17512 -37.31160 -36.38395 -33.78436 -32.43898 -31.21684 -30.01836 -29.39146 -28.96047 -25.66452 -24.76980 -23.87687 -22.72286 -21.88056 -20.63739 -18.83209 -18.59459 -17.72084 -16.98881 -16.66293 -16.20255 -16.00212 -15.54906 -15.33033 -14.79234 -14.77301 -14.45401 -14.19627 -14.00111 -13.96949 -13.82632 -13.14687 -13.11313 -12.92594 -12.65551 -12.42993 -11.95792 -11.87372 -11.55877 -11.27556 -11.15501 -11.07602 -10.94601 -10.65209 -10.56221 -10.54262 -9.66958 -9.53714 -9.00282 -8.40395 -8.18569 -7.94530 -7.83550 -7.51482 -6.62134 -4.23032 0.57091 0.94396 1.41883 1.50661 2.00727 2.03875 2.41124 2.58146 2.77354 3.02385 3.03370 3.06610 3.81359 4.08122 4.31423 4.31765 4.47318 4.64015 4.65824 4.77555 4.82678 4.90212 5.03943 5.21554 5.23973 5.27665 5.36682 5.50105 5.62043 5.79585 5.86262 6.04626 6.18433 6.37838 6.46587 6.75621 6.81978 6.93177 6.94838 7.14268 7.44100 7.58968 7.79698 8.82432 9.47667 10.54909 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.015679 B = 0.002008 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.353138 B =13940.573611 C =15692.188227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.229 6.229 3 C -0.111 4.111 4 C 0.138 3.862 5 N -0.666 5.666 6 C 0.598 3.402 7 S -0.636 6.636 8 N -0.538 5.538 9 N -0.305 5.305 10 C 0.180 3.820 11 C -0.035 4.035 12 C -0.164 4.164 13 C -0.086 4.086 14 C -0.163 4.163 15 C 0.146 3.854 16 O -0.171 6.171 17 C -0.398 4.398 18 H 0.092 0.908 19 C 0.043 3.957 20 N -0.857 5.857 21 Si 0.941 3.059 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.194 4.194 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.412 0.588 34 H 0.415 0.585 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.273 0.727 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.307 -19.636 -0.282 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.004 6.004 3 C -0.260 4.260 4 C 0.014 3.986 5 N -0.295 5.295 6 C 0.238 3.762 7 S -0.511 6.511 8 N -0.261 5.261 9 N -0.111 5.111 10 C -0.029 4.029 11 C -0.038 4.038 12 C -0.185 4.185 13 C -0.104 4.104 14 C -0.184 4.184 15 C 0.092 3.908 16 O -0.075 6.075 17 C -0.474 4.474 18 H 0.110 0.890 19 C -0.163 4.163 20 N -0.491 5.491 21 Si 0.765 3.235 22 H -0.194 1.194 23 H -0.201 1.201 24 H -0.194 1.194 25 C -0.216 4.216 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.123 0.877 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.251 0.749 34 H 0.259 0.741 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.083 0.917 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.806 -21.657 -0.286 22.424 hybrid contribution 0.273 2.872 0.079 2.886 sum -5.533 -18.786 -0.207 19.585 Atomic orbital electron populations 1.23448 0.93753 1.06902 1.05253 1.87035 1.07489 1.07821 1.98090 1.23574 0.99269 0.97096 1.06093 1.21372 0.91998 0.79051 1.06197 1.44857 1.05053 1.09739 1.69901 1.21934 0.89416 0.85155 0.79731 1.93675 1.38642 1.44002 1.74788 1.46257 1.07935 1.02026 1.69898 1.74637 1.15607 1.01683 1.19164 1.24737 0.99281 0.89358 0.89548 1.17965 0.91127 0.90551 1.04140 1.20735 0.91412 0.98756 1.07601 1.20634 0.98444 0.92076 0.99281 1.20479 0.94332 0.95813 1.07746 1.19178 0.92805 0.85259 0.93578 1.84019 1.28724 1.16644 1.78069 1.21247 0.80089 0.92990 1.53043 0.89046 1.25304 1.00304 0.94498 0.96192 1.70019 1.33359 1.00895 1.44820 0.85782 0.80218 0.78213 0.79286 1.19389 1.20145 1.19384 1.21232 1.00484 0.90972 1.08882 0.90221 0.90227 0.87654 0.89069 0.89066 0.88350 0.88360 0.74933 0.74088 0.85808 0.86744 0.86410 0.85993 0.91722 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.76 101.05 1.09 0.53 16 2 S -0.23 -1.67 22.38 -107.50 -2.41 -4.07 16 3 C -0.11 -0.70 6.05 37.16 0.22 -0.47 16 4 C 0.14 1.18 5.14 -4.04 -0.02 1.16 16 5 N -0.67 -6.39 5.52 -62.03 -0.34 -6.73 16 6 C 0.60 7.27 7.97 -86.92 -0.69 6.58 16 7 S -0.64 -9.85 29.32 -107.50 -3.15 -13.00 16 8 N -0.54 -6.06 6.26 29.96 0.19 -5.87 16 9 N -0.31 -3.53 9.46 32.16 0.30 -3.22 16 10 C 0.18 2.17 10.75 -14.66 -0.16 2.02 16 11 C -0.03 -0.52 5.87 -105.07 -0.62 -1.14 16 12 C -0.16 -2.33 9.58 -39.11 -0.37 -2.70 16 13 C -0.09 -1.26 10.02 -39.67 -0.40 -1.66 16 14 C -0.16 -2.93 9.98 -39.30 -0.39 -3.32 16 15 C 0.15 3.05 6.64 -39.17 -0.26 2.79 16 16 O -0.17 -4.41 9.76 0.00 0.00 -4.41 16 17 C -0.40 -10.07 9.48 30.89 0.29 -9.77 16 18 H 0.09 2.08 5.20 -52.49 -0.27 1.80 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -23.51 13.67 55.48 0.76 -22.76 16 21 Si 0.94 18.99 29.55 -169.99 -5.02 13.97 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 25 C -0.19 -3.49 8.90 -38.96 -0.35 -3.83 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 28 H 0.10 0.38 8.14 -51.92 -0.42 -0.04 16 29 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.10 0.95 7.99 -51.93 -0.41 0.53 16 32 H 0.10 0.95 7.99 -51.93 -0.42 0.53 16 33 H 0.41 3.54 7.51 -40.82 -0.31 3.24 16 34 H 0.41 4.22 8.63 -182.60 -1.58 2.64 16 35 H 0.12 1.21 8.02 -52.49 -0.42 0.79 16 36 H 0.11 1.39 7.55 -52.49 -0.40 0.99 16 37 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 38 H 0.12 2.10 8.06 -52.48 -0.42 1.68 16 39 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.14 2.37 5.63 -52.48 -0.30 2.08 16 LS Contribution 377.56 15.07 5.69 5.69 Total: -1.00 -30.48 377.56 -11.93 -42.41 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.19 Total: 6.84 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -1.75 Total: -8.84 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.91 Total: -38.58 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: 0.00 Total: -4.41 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Atomic # 16 Polarization: -11.52 SS G_CDS: -5.56 Total: -17.08 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.48 -11.93 -42.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769605028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.314 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds