Wall clock time and date at job start Tue Mar 31 2020 22:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81402 * 102.99933 * 2 1 4 4 C 1.53001 * 109.46855 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47035 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00148 * 180.02562 * 5 4 3 7 7 S 1.71202 * 119.99904 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99961 * 179.97438 * 6 5 4 9 9 N 1.40100 * 119.99992 * 359.97438 * 8 6 5 10 10 C 1.29754 * 120.00138 * 180.02562 * 9 8 6 11 11 C 1.47495 * 120.00295 * 180.02562 * 10 9 8 12 12 C 1.39762 * 120.11922 * 359.97438 * 11 10 9 13 13 C 1.37980 * 119.97414 * 180.02562 * 12 11 10 14 14 C 1.38251 * 120.23127 * 359.72279 * 13 12 11 15 15 C 1.38980 * 120.24843 * 0.54944 * 14 13 12 16 16 O 1.35760 * 119.98846 * 179.72355 * 15 14 13 17 17 C 1.34837 * 116.99569 * 174.18600 * 16 15 14 18 18 H 1.07995 * 119.99773 * 5.05821 * 17 16 15 19 19 C 1.38655 * 119.99834 * 185.05707 * 17 16 15 20 20 N 1.31558 * 119.99527 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99961 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47260 * 59.99733 * 21 19 17 23 23 H 1.48495 * 109.46899 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46760 * 300.00004 * 21 19 17 25 25 C 1.38607 * 120.01329 * 359.45386 * 15 14 13 26 26 H 1.08994 * 109.47396 * 300.00352 * 1 2 3 27 27 H 1.09006 * 109.46950 * 60.00445 * 1 2 3 28 28 H 1.09007 * 109.47135 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47041 * 60.00206 * 3 2 1 30 30 H 1.08991 * 109.47064 * 299.99900 * 3 2 1 31 31 H 1.09000 * 109.47263 * 60.00087 * 4 3 2 32 32 H 1.08998 * 109.47439 * 299.99790 * 4 3 2 33 33 H 0.97002 * 119.99297 * 0.02562 * 5 4 3 34 34 H 0.96997 * 119.99888 * 180.02562 * 8 6 5 35 35 H 1.07999 * 119.99916 * 359.97438 * 10 9 8 36 36 H 1.07998 * 120.01275 * 359.97438 * 12 11 10 37 37 H 1.08004 * 119.87833 * 179.97438 * 13 12 11 38 38 H 1.08007 * 119.87430 * 180.27966 * 14 13 12 39 39 H 0.97007 * 119.99382 * 180.02562 * 20 19 17 40 40 H 1.08009 * 120.11063 * 180.25211 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 7 4.0719 3.3674 0.0013 6 6 5.3607 3.7615 0.0014 7 16 6.6128 2.5939 0.0001 8 7 5.6639 5.0747 0.0014 9 7 4.6392 6.0302 0.0008 10 6 4.9311 7.2945 0.0004 11 6 3.8524 8.3004 0.0003 12 6 2.5150 7.8946 0.0002 13 6 1.5082 8.8382 -0.0004 14 6 1.8172 10.1857 0.0049 15 6 3.1439 10.5998 -0.0007 16 8 3.4413 11.9244 -0.0011 17 6 4.7421 12.2597 0.1151 18 1 5.4996 11.4901 0.1208 19 6 5.1071 13.5927 0.2272 20 7 4.1841 14.5302 0.2197 21 14 6.9093 14.0573 0.3875 22 1 7.6513 13.5814 -0.8075 23 1 7.0325 15.5335 0.4908 24 1 7.4766 13.4262 1.6062 25 6 4.1633 9.6607 -0.0001 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8031 2.2371 0.8900 30 1 1.8031 2.2371 -0.8899 31 1 4.1616 1.4702 -0.8891 32 1 4.1608 1.4704 0.8908 33 1 3.3624 4.0289 0.0016 34 1 6.5915 5.3583 0.0011 35 1 5.9639 7.6102 0.0009 36 1 2.2696 6.8428 -0.0003 37 1 0.4753 8.5228 -0.0009 38 1 1.0246 10.9194 0.0089 39 1 4.4395 15.4628 0.2978 40 1 5.1949 9.9808 -0.0003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769605028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:14 Heat of formation + Delta-G solvation = 37.459217 kcal Electronic energy + Delta-G solvation = -22697.004535 eV Core-core repulsion = 19151.391750 eV Total energy + Delta-G solvation = -3545.612785 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.85989 -40.33060 -38.57060 -37.52680 -34.83547 -34.17264 -32.17277 -31.10997 -30.33000 -29.73178 -27.38623 -25.90977 -24.58595 -23.80221 -23.28580 -21.80564 -20.06263 -19.77075 -19.00877 -18.38545 -17.44288 -16.91873 -16.85078 -16.76151 -16.45429 -16.15252 -15.98365 -15.66472 -15.46491 -15.31031 -14.58183 -14.42346 -14.39877 -14.19440 -13.72380 -13.71530 -13.53540 -13.07295 -12.93889 -12.69150 -12.65005 -12.53573 -12.35979 -12.15803 -12.09528 -11.66415 -11.27883 -11.03424 -10.81232 -10.47518 -9.58451 -9.18782 -9.04160 -8.95127 -8.73025 -8.44776 -6.13077 -0.53014 0.32122 0.32400 0.53970 0.69677 1.38542 1.39447 1.40889 1.50069 1.53255 1.56991 1.94316 2.18792 2.86564 3.18537 3.44068 3.47566 3.53693 3.78790 3.83507 4.19024 4.24875 4.29395 4.33338 4.35588 4.37188 4.52337 4.57877 4.64126 4.76957 4.91975 4.95388 5.03026 5.09692 5.15986 5.28064 5.57959 5.63235 5.64857 5.99485 6.02116 6.10730 6.60673 7.00384 7.79589 8.77631 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.015679 B = 0.002008 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.353138 B =13940.573611 C =15692.188227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.283 6.283 3 C -0.094 4.094 4 C 0.142 3.858 5 N -0.646 5.646 6 C 0.613 3.387 7 S -0.704 6.704 8 N -0.531 5.531 9 N -0.292 5.292 10 C 0.179 3.821 11 C -0.030 4.030 12 C -0.143 4.143 13 C -0.075 4.075 14 C -0.177 4.177 15 C 0.108 3.892 16 O -0.230 6.230 17 C -0.411 4.411 18 H 0.108 0.892 19 C -0.022 4.022 20 N -0.919 5.919 21 Si 1.013 2.987 22 H -0.257 1.257 23 H -0.278 1.278 24 H -0.257 1.257 25 C -0.198 4.198 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.422 0.578 34 H 0.422 0.578 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.159 0.841 38 H 0.118 0.882 39 H 0.271 0.729 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.080 -22.187 -0.243 23.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.059 6.059 3 C -0.243 4.243 4 C 0.017 3.983 5 N -0.275 5.275 6 C 0.248 3.752 7 S -0.579 6.579 8 N -0.253 5.253 9 N -0.098 5.098 10 C -0.031 4.031 11 C -0.033 4.033 12 C -0.164 4.164 13 C -0.092 4.092 14 C -0.197 4.197 15 C 0.057 3.943 16 O -0.136 6.136 17 C -0.487 4.487 18 H 0.125 0.875 19 C -0.220 4.220 20 N -0.557 5.557 21 Si 0.832 3.168 22 H -0.181 1.181 23 H -0.203 1.203 24 H -0.181 1.181 25 C -0.220 4.220 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.131 0.869 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.263 0.737 34 H 0.267 0.733 35 H 0.167 0.833 36 H 0.167 0.833 37 H 0.176 0.824 38 H 0.136 0.864 39 H 0.080 0.920 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.621 -24.277 -0.251 25.165 hybrid contribution 0.251 3.258 0.053 3.268 sum -6.370 -21.020 -0.198 21.965 Atomic orbital electron populations 1.23492 0.90608 1.07754 1.06203 1.87280 1.11016 1.09387 1.98241 1.23453 0.97230 0.96183 1.07430 1.21351 0.93747 0.78054 1.05107 1.44878 1.04277 1.10547 1.67779 1.21479 0.89425 0.84679 0.79568 1.93861 1.40731 1.45693 1.77659 1.46130 1.08363 1.01562 1.69280 1.74548 1.15621 1.01510 1.18125 1.24606 0.99705 0.88938 0.89873 1.18080 0.92571 0.89818 1.02792 1.21257 0.90777 1.00391 1.03935 1.21076 1.00814 0.90324 0.97033 1.20752 0.93256 0.97630 1.08087 1.19748 0.94810 0.84513 0.95189 1.83987 1.28909 1.19300 1.81431 1.21765 0.80820 0.93696 1.52388 0.87483 1.26505 1.05028 0.94363 0.96059 1.70173 1.35799 1.01121 1.48636 0.84718 0.74470 0.77649 0.79917 1.18092 1.20285 1.18113 1.21277 0.99805 0.92045 1.08897 0.89235 0.89234 0.86921 0.87668 0.87656 0.89485 0.89502 0.73743 0.73284 0.83319 0.83282 0.82353 0.86416 0.91981 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.76 113.37 1.22 0.52 16 2 S -0.28 -3.64 22.38 -56.49 -1.26 -4.90 16 3 C -0.09 -0.90 6.05 71.98 0.44 -0.46 16 4 C 0.14 2.12 5.14 86.38 0.44 2.56 16 5 N -0.65 -10.30 5.52 -350.15 -1.93 -12.23 16 6 C 0.61 13.30 7.97 179.06 1.43 14.73 16 7 S -0.70 -21.25 29.32 -56.49 -1.66 -22.91 16 8 N -0.53 -10.12 6.26 -59.12 -0.37 -10.49 16 9 N -0.29 -5.43 9.46 -52.16 -0.49 -5.92 16 10 C 0.18 3.58 10.75 87.44 0.94 4.52 16 11 C -0.03 -0.79 5.87 -20.15 -0.12 -0.91 16 12 C -0.14 -3.37 9.58 22.58 0.22 -3.15 16 13 C -0.07 -1.91 10.02 22.21 0.22 -1.69 16 14 C -0.18 -6.24 9.98 22.45 0.22 -6.01 16 15 C 0.11 4.58 6.64 22.54 0.15 4.73 16 16 O -0.23 -12.45 9.76 -22.93 -0.22 -12.67 16 17 C -0.41 -21.64 9.48 67.92 0.64 -20.99 16 18 H 0.11 4.97 5.20 -2.91 -0.02 4.96 16 19 C -0.02 -1.15 5.49 84.83 0.47 -0.68 16 20 N -0.92 -53.44 13.67 21.61 0.30 -53.15 16 21 Si 1.01 39.84 29.55 68.60 2.03 41.87 16 22 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 23 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 25 C -0.20 -6.96 8.90 22.67 0.20 -6.76 16 26 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.11 0.54 8.14 -2.39 -0.02 0.53 16 29 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 0.74 8.14 -2.40 -0.02 0.72 16 31 H 0.09 1.57 7.99 -2.39 -0.02 1.56 16 32 H 0.09 1.57 7.99 -2.39 -0.02 1.55 16 33 H 0.42 5.28 7.51 -92.71 -0.70 4.58 16 34 H 0.42 7.29 8.63 -213.32 -1.84 5.45 16 35 H 0.15 2.31 8.02 -2.91 -0.02 2.29 16 36 H 0.15 2.59 7.55 -2.91 -0.02 2.56 16 37 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 38 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 39 H 0.27 14.59 8.31 -92.70 -0.77 13.82 16 40 H 0.13 4.61 5.63 -2.91 -0.02 4.59 16 Total: -1.00 -71.94 377.56 1.41 -70.53 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: -1.45 Total: 23.46 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: 6.47 Total: -13.59 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -2.50 Total: -81.79 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.22 Total: -12.67 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Atomic # 16 Polarization: -24.89 SS G_CDS: -2.92 Total: -27.81 kcal Total: -71.94 1.41 -70.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769605028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.991 kcal (2) G-P(sol) polarization free energy of solvation -71.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds